Wall clock time and date at job start Tue Mar 31 2020 13:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 116.99713 * 2 1 4 4 C 1.38565 * 120.07637 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.99815 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14884 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92759 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47526 * 90.00118 * 7 6 5 9 9 C 1.46898 * 111.00059 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46798 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.46793 * 180.02562 * 10 9 8 12 12 O 1.20820 * 119.99947 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99682 * 180.02562 * 11 10 9 14 14 C 1.38248 * 120.14817 * 359.76851 * 6 5 4 15 15 C 1.38565 * 119.99552 * 0.50974 * 14 6 5 16 16 O 1.35995 * 120.07439 * 179.74455 * 15 14 6 17 17 C 1.42903 * 116.99587 * 359.72507 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00241 * 23 21 19 25 25 H 1.48494 * 109.47178 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00183 * 23 21 19 27 27 H 1.09005 * 109.47392 * 300.00389 * 1 2 3 28 28 H 1.09002 * 109.46922 * 59.99615 * 1 2 3 29 29 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99773 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.92435 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47412 * 210.00067 * 7 6 5 33 33 H 1.09000 * 109.47112 * 329.99885 * 7 6 5 34 34 H 1.00896 * 111.00258 * 56.04187 * 8 7 6 35 35 H 1.08995 * 109.46978 * 299.99581 * 9 8 7 36 36 H 1.08996 * 109.47050 * 59.99907 * 9 8 7 37 37 H 1.08997 * 109.47670 * 299.99520 * 10 9 8 38 38 H 1.08996 * 109.47243 * 60.00212 * 10 9 8 39 39 H 0.96702 * 116.99954 * 179.97438 * 13 11 10 40 40 H 1.07994 * 120.00428 * 180.27944 * 14 6 5 41 41 H 1.09002 * 109.47382 * 60.00075 * 17 16 15 42 42 H 1.09001 * 109.46938 * 300.00061 * 17 16 15 43 43 H 1.09001 * 109.47194 * 299.99575 * 18 17 16 44 44 H 1.08992 * 109.47399 * 59.99748 * 18 17 16 45 45 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3028 3.6799 0.0016 7 6 3.9836 5.0244 0.0028 8 7 4.2044 5.4603 1.3881 9 6 4.8671 6.7707 1.4283 10 6 5.0790 7.1905 2.8843 11 6 5.7584 8.5351 2.9256 12 8 6.0442 9.0994 1.8962 13 8 6.0469 9.1053 4.1060 14 6 4.0603 2.5234 0.0064 15 6 3.4359 1.2864 0.0001 16 8 4.1795 0.1477 -0.0004 17 6 5.6003 0.3007 -0.0003 18 6 6.2618 -1.0789 -0.0016 19 6 7.7602 -0.9175 -0.0008 20 1 8.1968 0.0702 0.0000 21 6 8.5734 -2.0309 -0.0012 22 7 8.0416 -3.2337 -0.0017 23 14 10.4307 -1.8309 -0.0010 24 1 10.9227 -1.7785 1.3993 25 1 11.0527 -2.9831 -0.7014 26 1 10.7930 -0.5720 -0.7004 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2146 2.3197 0.0014 31 1 1.3341 4.5116 0.0019 32 1 4.9419 4.9469 -0.5108 33 1 3.3539 5.7509 -0.5108 34 1 4.7316 4.7721 1.9041 35 1 5.8315 6.7057 0.9246 36 1 4.2432 7.5090 0.9248 37 1 4.1145 7.2557 3.3877 38 1 5.7028 6.4522 3.3882 39 1 6.4832 9.9679 4.0819 40 1 5.1385 2.5840 0.0114 41 1 5.9065 0.8501 0.8900 42 1 5.9065 0.8510 -0.8900 43 1 5.9556 -1.6295 0.8880 44 1 5.9555 -1.6279 -0.8919 45 1 8.6137 -4.0170 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345173385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:55 Heat of formation + Delta-G solvation = -152.935006 kcal Electronic energy + Delta-G solvation = -26190.268204 eV Core-core repulsion = 22173.116100 eV Total energy + Delta-G solvation = -4017.152104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.62419 -40.33083 -38.17903 -37.61897 -36.63275 -35.83875 -33.37708 -32.25716 -30.64938 -29.94226 -29.20958 -27.41550 -25.44347 -24.94867 -23.45253 -22.41175 -21.44290 -21.02287 -20.46853 -18.48555 -18.26977 -17.07263 -16.95047 -16.76995 -16.37935 -16.05710 -15.82676 -15.46048 -14.98805 -14.72560 -14.60773 -14.57669 -14.45616 -13.91958 -13.69662 -13.36334 -12.96127 -12.63434 -12.57622 -12.31319 -12.08608 -11.93848 -11.85907 -11.58260 -11.49654 -11.42472 -11.05581 -11.00128 -10.92881 -10.82153 -10.77081 -10.54571 -9.82927 -9.64767 -9.28510 -8.79459 -8.50983 -8.43583 -7.49507 -6.08992 -4.13754 1.38053 1.59654 1.82189 2.59778 3.27509 3.33504 3.36164 3.42289 3.74943 3.81363 4.22536 4.38039 4.41186 4.61120 4.78012 4.85112 4.95818 5.03567 5.16144 5.17501 5.20398 5.26436 5.27262 5.38945 5.46120 5.50575 5.54262 5.57325 5.61337 5.83563 6.03948 6.04740 6.10702 6.28306 6.34637 6.59384 6.67080 6.71419 6.84780 7.07625 7.33364 7.49399 7.57209 7.67457 7.84839 8.11542 8.25470 8.91949 9.50356 11.02568 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.006811 B = 0.003111 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4109.711075 B = 8998.518585 C =12704.345969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.303 6.303 3 C 0.091 3.909 4 C -0.176 4.176 5 C -0.107 4.107 6 C -0.085 4.085 7 C 0.106 3.894 8 N -0.685 5.685 9 C 0.068 3.932 10 C -0.114 4.114 11 C 0.482 3.518 12 O -0.517 6.517 13 O -0.518 6.518 14 C -0.172 4.172 15 C 0.119 3.881 16 O -0.304 6.304 17 C 0.065 3.935 18 C 0.026 3.974 19 C -0.526 4.526 20 H 0.057 0.943 21 C 0.061 3.939 22 N -0.889 5.889 23 Si 0.898 3.102 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.346 0.654 35 H 0.042 0.958 36 H 0.082 0.918 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.411 0.589 40 H 0.134 0.866 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.931 20.474 4.504 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.046 3.954 4 C -0.195 4.195 5 C -0.126 4.126 6 C -0.086 4.086 7 C -0.022 4.022 8 N -0.317 5.317 9 C -0.062 4.062 10 C -0.152 4.152 11 C 0.324 3.676 12 O -0.406 6.406 13 O -0.330 6.330 14 C -0.191 4.191 15 C 0.072 3.928 16 O -0.217 6.217 17 C -0.009 4.009 18 C -0.011 4.011 19 C -0.564 4.564 20 H 0.076 0.924 21 C -0.142 4.142 22 N -0.527 5.527 23 Si 0.725 3.275 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.148 0.852 31 H 0.140 0.860 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.165 0.835 35 H 0.060 0.940 36 H 0.101 0.899 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.269 0.731 40 H 0.152 0.848 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.588 19.913 4.284 24.485 hybrid contribution 2.136 0.656 -0.224 2.246 sum -11.452 20.569 4.061 23.890 Atomic orbital electron populations 1.23018 0.79214 1.03733 1.00776 1.86245 1.20433 1.25978 1.88955 1.18363 0.89446 0.85102 1.02531 1.20961 0.99535 0.91560 1.07429 1.20543 0.93569 0.96657 1.01812 1.19309 0.93471 0.93473 1.02330 1.20773 0.98965 0.93441 0.89027 1.60477 1.53203 1.04036 1.13990 1.21726 0.98436 0.92163 0.93827 1.21297 1.02784 0.90914 1.00176 1.23465 0.75574 0.87892 0.80668 1.90744 1.50441 1.64346 1.35032 1.84543 1.73753 1.39421 1.35255 1.21031 1.00484 0.90734 1.06869 1.18401 0.88506 0.87016 0.98860 1.86289 1.20897 1.27269 1.87292 1.23318 0.74998 1.03219 0.99358 1.19107 0.94115 0.88949 0.98942 1.20967 0.90358 0.92865 1.52248 0.92437 1.24987 0.99091 0.95137 0.94951 1.69976 1.35433 0.97606 1.49670 0.86502 0.84967 0.77796 0.78201 1.20501 1.21049 1.19793 0.93009 0.93036 0.88426 0.85219 0.85971 0.93983 0.90033 0.83536 0.93966 0.89927 0.86560 0.87404 0.73050 0.84806 0.93309 0.93317 0.95366 0.95372 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.93 10.28 -34.23 -0.35 -5.28 16 3 C 0.09 1.47 6.70 -39.12 -0.26 1.21 16 4 C -0.18 -2.22 9.04 -39.46 -0.36 -2.58 16 5 C -0.11 -1.27 9.69 -39.58 -0.38 -1.65 16 6 C -0.09 -1.07 5.39 -104.62 -0.56 -1.63 16 7 C 0.11 1.08 5.81 -4.98 -0.03 1.05 16 8 N -0.69 -6.35 6.49 -115.06 -0.75 -7.09 16 9 C 0.07 0.56 4.98 -3.82 -0.02 0.55 16 10 C -0.11 -0.76 6.07 -27.88 -0.17 -0.93 16 11 C 0.48 3.93 8.33 36.01 0.30 4.23 16 12 O -0.52 -5.93 16.74 -18.74 -0.31 -6.25 16 13 O -0.52 -3.19 13.42 -39.26 -0.53 -3.71 16 14 C -0.17 -2.60 8.69 -39.46 -0.34 -2.94 16 15 C 0.12 2.14 6.70 -39.12 -0.26 1.88 16 16 O -0.30 -6.54 9.92 -34.23 -0.34 -6.88 16 17 C 0.07 1.41 4.68 37.16 0.17 1.59 16 18 C 0.03 0.69 5.34 -27.88 -0.15 0.54 16 19 C -0.53 -14.71 9.11 -34.44 -0.31 -15.02 16 20 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 23 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 27 H 0.05 0.45 7.66 -51.93 -0.40 0.06 16 28 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.13 1.27 6.30 -52.49 -0.33 0.94 16 31 H 0.12 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.04 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.35 3.21 8.72 -39.29 -0.34 2.86 16 35 H 0.04 0.39 8.10 -51.93 -0.42 -0.03 16 36 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.41 0.91 9.10 45.56 0.41 1.32 16 40 H 0.13 1.97 6.30 -52.49 -0.33 1.64 16 41 H 0.05 0.99 7.65 -51.93 -0.40 0.59 16 42 H 0.05 1.00 7.68 -51.93 -0.40 0.60 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -34.74 385.06 -8.18 -42.92 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.94 Total: 0.91 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -1.48 Total: -10.80 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: -0.01 Total: -32.98 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -1.53 Total: -22.12 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.74 -8.18 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345173385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.012 kcal (2) G-P(sol) polarization free energy of solvation -34.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds