Wall clock time and date at job start Tue Mar 31 2020 13:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35996 * 116.99713 * 2 1 4 4 C 1.38565 * 120.07637 * 0.02562 * 3 2 1 5 5 C 1.38242 * 119.99815 * 179.97438 * 4 3 2 6 6 C 1.38246 * 120.14884 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.92759 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47526 * 90.00118 * 7 6 5 9 9 C 1.46898 * 111.00059 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46798 * 179.97438 * 9 8 7 11 11 C 1.50708 * 109.46793 * 180.02562 * 10 9 8 12 12 O 1.20820 * 119.99947 * 359.97438 * 11 10 9 13 13 O 1.34230 * 119.99682 * 180.02562 * 11 10 9 14 14 C 1.38248 * 120.14817 * 359.76851 * 6 5 4 15 15 C 1.38565 * 119.99552 * 0.50974 * 14 6 5 16 16 O 1.35995 * 120.07439 * 179.74455 * 15 14 6 17 17 C 1.42903 * 116.99587 * 359.72507 * 16 15 14 18 18 C 1.53000 * 109.46726 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.46735 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99928 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99611 * 179.97438 * 19 18 17 22 22 N 1.31511 * 120.00327 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99743 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46828 * 90.00241 * 23 21 19 25 25 H 1.48494 * 109.47178 * 209.99936 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00183 * 23 21 19 27 27 H 1.09005 * 109.47392 * 300.00389 * 1 2 3 28 28 H 1.09002 * 109.46922 * 59.99615 * 1 2 3 29 29 H 1.09000 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99773 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.92435 * 180.02562 * 5 4 3 32 32 H 1.09000 * 109.47412 * 210.00067 * 7 6 5 33 33 H 1.09000 * 109.47112 * 329.99885 * 7 6 5 34 34 H 1.00896 * 111.00258 * 56.04187 * 8 7 6 35 35 H 1.08995 * 109.46978 * 299.99581 * 9 8 7 36 36 H 1.08996 * 109.47050 * 59.99907 * 9 8 7 37 37 H 1.08997 * 109.47670 * 299.99520 * 10 9 8 38 38 H 1.08996 * 109.47243 * 60.00212 * 10 9 8 39 39 H 0.96702 * 116.99954 * 179.97438 * 13 11 10 40 40 H 1.07994 * 120.00428 * 180.27944 * 14 6 5 41 41 H 1.09002 * 109.47382 * 60.00075 * 17 16 15 42 42 H 1.09001 * 109.46938 * 300.00061 * 17 16 15 43 43 H 1.09001 * 109.47194 * 299.99575 * 18 17 16 44 44 H 1.08992 * 109.47399 * 59.99748 * 18 17 16 45 45 H 0.97000 * 120.00354 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9224 3.6058 0.0011 6 6 3.3028 3.6799 0.0016 7 6 3.9836 5.0244 0.0028 8 7 4.2044 5.4603 1.3881 9 6 4.8671 6.7707 1.4283 10 6 5.0790 7.1905 2.8843 11 6 5.7584 8.5351 2.9256 12 8 6.0442 9.0994 1.8962 13 8 6.0469 9.1053 4.1060 14 6 4.0603 2.5234 0.0064 15 6 3.4359 1.2864 0.0001 16 8 4.1795 0.1477 -0.0004 17 6 5.6003 0.3007 -0.0003 18 6 6.2618 -1.0789 -0.0016 19 6 7.7602 -0.9175 -0.0008 20 1 8.1968 0.0702 0.0000 21 6 8.5734 -2.0309 -0.0012 22 7 8.0416 -3.2337 -0.0017 23 14 10.4307 -1.8309 -0.0010 24 1 10.9227 -1.7785 1.3993 25 1 11.0527 -2.9831 -0.7014 26 1 10.7930 -0.5720 -0.7004 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.2146 2.3197 0.0014 31 1 1.3341 4.5116 0.0019 32 1 4.9419 4.9469 -0.5108 33 1 3.3539 5.7509 -0.5108 34 1 4.7316 4.7721 1.9041 35 1 5.8315 6.7057 0.9246 36 1 4.2432 7.5090 0.9248 37 1 4.1145 7.2557 3.3877 38 1 5.7028 6.4522 3.3882 39 1 6.4832 9.9679 4.0819 40 1 5.1385 2.5840 0.0114 41 1 5.9065 0.8501 0.8900 42 1 5.9065 0.8510 -0.8900 43 1 5.9556 -1.6295 0.8880 44 1 5.9555 -1.6279 -0.8919 45 1 8.6137 -4.0170 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345173385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:54 Heat of formation + Delta-G solvation = -177.821607 kcal Electronic energy + Delta-G solvation = -26191.347368 eV Core-core repulsion = 22173.116100 eV Total energy + Delta-G solvation = -4018.231268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.51040 -41.23263 -39.45326 -38.65977 -37.29573 -36.67203 -35.46374 -33.11892 -32.37678 -30.99996 -30.42275 -28.29195 -27.06450 -26.08458 -24.22953 -23.88205 -22.56255 -21.97964 -21.68973 -19.50244 -19.08706 -18.62201 -17.80793 -17.63992 -17.51410 -17.26848 -17.12392 -16.54446 -16.33754 -16.31926 -15.67014 -15.49909 -15.30325 -15.06753 -14.43774 -14.33041 -14.19842 -14.11142 -13.93288 -13.50223 -13.10129 -13.05785 -12.82069 -12.66664 -12.58993 -12.55152 -12.52758 -12.21118 -12.11419 -11.95009 -11.86159 -11.65563 -11.57967 -11.56183 -11.39796 -10.62299 -9.69789 -9.44036 -8.69830 -8.26480 -6.40642 0.31258 0.48300 1.21432 1.40375 1.43001 1.54049 2.07982 2.27845 2.44816 2.52444 2.72650 3.07737 3.45021 3.77515 3.82805 3.88580 4.09518 4.10469 4.16434 4.27091 4.29276 4.41524 4.44615 4.44759 4.47793 4.61751 4.63429 4.67297 4.74722 4.76175 4.87939 4.89487 4.92815 5.21585 5.31177 5.33295 5.46766 5.62184 5.63500 5.68558 5.81256 5.92153 6.05638 6.26555 6.33956 6.72892 6.75939 6.99718 7.29582 8.86910 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.006811 B = 0.003111 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4109.711075 B = 8998.518585 C =12704.345969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.342 6.342 3 C 0.074 3.926 4 C -0.166 4.166 5 C -0.093 4.093 6 C -0.082 4.082 7 C 0.109 3.891 8 N -0.683 5.683 9 C 0.072 3.928 10 C -0.109 4.109 11 C 0.487 3.513 12 O -0.556 6.556 13 O -0.514 6.514 14 C -0.172 4.172 15 C 0.070 3.930 16 O -0.337 6.337 17 C 0.086 3.914 18 C 0.030 3.970 19 C -0.545 4.545 20 H 0.072 0.928 21 C 0.001 3.999 22 N -0.932 5.932 23 Si 0.977 3.023 24 H -0.269 1.269 25 H -0.282 1.282 26 H -0.259 1.259 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.346 0.654 35 H 0.030 0.970 36 H 0.080 0.920 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.427 0.573 40 H 0.131 0.869 41 H 0.061 0.939 42 H 0.057 0.943 43 H -0.004 1.004 44 H -0.005 1.005 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.486 23.286 5.109 27.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.029 3.971 4 C -0.185 4.185 5 C -0.112 4.112 6 C -0.083 4.083 7 C -0.020 4.020 8 N -0.314 5.314 9 C -0.057 4.057 10 C -0.147 4.147 11 C 0.331 3.669 12 O -0.448 6.448 13 O -0.328 6.328 14 C -0.192 4.192 15 C 0.025 3.975 16 O -0.252 6.252 17 C 0.011 3.989 18 C -0.008 4.008 19 C -0.583 4.583 20 H 0.090 0.910 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.800 3.200 24 H -0.194 1.194 25 H -0.207 1.207 26 H -0.183 1.183 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.181 0.819 31 H 0.175 0.825 32 H 0.057 0.943 33 H 0.117 0.883 34 H 0.164 0.836 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.289 0.711 40 H 0.148 0.852 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.014 0.986 44 H 0.013 0.987 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.167 22.763 4.914 27.259 hybrid contribution 2.132 -0.137 -0.373 2.168 sum -12.036 22.626 4.541 26.028 Atomic orbital electron populations 1.23342 0.76488 1.05233 1.02506 1.86188 1.23469 1.26809 1.89214 1.18677 0.89094 0.86265 1.03082 1.21332 1.00991 0.90462 1.05666 1.21002 0.93436 0.97615 0.99135 1.19565 0.94002 0.93543 1.01143 1.20778 0.98972 0.92443 0.89766 1.60486 1.53324 1.04341 1.13273 1.21662 0.97621 0.91519 0.94904 1.21287 1.03675 0.90463 0.99270 1.23670 0.74737 0.88026 0.80429 1.90735 1.52239 1.65463 1.36345 1.84509 1.73551 1.40587 1.34152 1.21096 1.00583 0.90764 1.06713 1.18853 0.89344 0.86730 1.02621 1.86185 1.20291 1.29868 1.88819 1.22828 0.75909 0.99870 1.00248 1.18940 0.94788 0.91276 0.95751 1.21391 0.91020 0.93710 1.52130 0.91012 1.26065 1.04966 0.94589 0.94136 1.70131 1.37685 0.98685 1.50626 0.85273 0.77751 0.78244 0.78717 1.19411 1.20705 1.18274 0.91153 0.91183 0.87312 0.81933 0.82533 0.94348 0.88329 0.83590 0.95168 0.90174 0.85065 0.86150 0.71094 0.85158 0.92132 0.92479 0.98576 0.98700 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -11.33 10.28 -79.64 -0.82 -12.15 16 3 C 0.07 2.38 6.70 22.57 0.15 2.53 16 4 C -0.17 -3.76 9.04 22.35 0.20 -3.56 16 5 C -0.09 -1.89 9.69 22.27 0.22 -1.67 16 6 C -0.08 -1.88 5.39 -19.86 -0.11 -1.99 16 7 C 0.11 1.96 5.81 85.56 0.50 2.45 16 8 N -0.68 -11.07 6.49 -517.95 -3.36 -14.43 16 9 C 0.07 1.07 4.98 86.30 0.43 1.50 16 10 C -0.11 -1.23 6.07 29.85 0.18 -1.05 16 11 C 0.49 7.16 8.33 71.24 0.59 7.75 16 12 O -0.56 -12.27 16.74 21.98 0.37 -11.90 16 13 O -0.51 -5.27 13.42 -51.42 -0.69 -5.96 16 14 C -0.17 -5.19 8.69 22.35 0.19 -4.99 16 15 C 0.07 2.58 6.70 22.57 0.15 2.73 16 16 O -0.34 -15.37 9.92 -79.63 -0.79 -16.16 16 17 C 0.09 3.90 4.68 71.98 0.34 4.23 16 18 C 0.03 1.68 5.34 29.85 0.16 1.84 16 19 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 20 H 0.07 3.81 7.74 -2.91 -0.02 3.79 16 21 C 0.00 0.05 5.46 84.66 0.46 0.51 16 22 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 23 Si 0.98 43.84 29.54 68.60 2.03 45.87 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 27 H 0.07 1.08 7.66 -2.38 -0.02 1.06 16 28 H 0.07 1.07 7.66 -2.39 -0.02 1.06 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.16 2.53 6.30 -2.91 -0.02 2.51 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 32 H 0.04 0.73 8.09 -2.39 -0.02 0.71 16 33 H 0.10 1.47 8.08 -2.39 -0.02 1.45 16 34 H 0.35 5.77 8.72 -89.70 -0.78 4.98 16 35 H 0.03 0.53 8.10 -2.39 -0.02 0.51 16 36 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 37 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.43 1.09 9.10 -74.06 -0.67 0.41 16 40 H 0.13 3.89 6.30 -2.91 -0.02 3.87 16 41 H 0.06 2.54 7.65 -2.39 -0.02 2.52 16 42 H 0.06 2.43 7.68 -2.39 -0.02 2.42 16 43 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 44 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -78.97 385.06 1.39 -77.57 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.44 Total: 13.76 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 4.81 Total: -19.21 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -3.08 Total: -71.82 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.93 Total: -46.16 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -78.97 1.39 -77.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345173385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.248 kcal (2) G-P(sol) polarization free energy of solvation -78.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds