Wall clock time and date at job start Tue Mar 31 2020 14:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99720 * 2 1 4 4 H 1.48493 * 109.47112 * 264.85334 * 3 2 1 5 5 H 1.48501 * 109.46991 * 24.85295 * 3 2 1 6 6 H 1.48496 * 109.46772 * 144.85074 * 3 2 1 7 7 C 1.37872 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99955 * 4.26567 * 7 2 1 9 9 C 1.50700 * 120.00525 * 184.26247 * 7 2 1 10 10 H 1.09009 * 109.51820 * 333.50912 * 9 7 2 11 11 C 1.53036 * 109.49488 * 93.58412 * 9 7 2 12 12 C 1.53049 * 109.53654 * 181.32056 * 11 9 7 13 13 C 1.53623 * 109.23974 * 298.51237 * 12 11 9 14 14 N 1.46927 * 108.54339 * 54.85810 * 13 12 11 15 15 C 1.34774 * 120.62955 * 126.36813 * 14 13 12 16 16 O 1.21279 * 119.99962 * 179.72159 * 15 14 13 17 17 C 1.50702 * 120.00144 * 359.71547 * 15 14 13 18 18 C 1.52998 * 109.47009 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47284 * 180.02562 * 18 17 15 20 20 N 1.46498 * 109.47601 * 179.97438 * 19 18 17 21 21 C 1.34766 * 124.18048 * 269.73331 * 20 19 18 22 22 O 1.21230 * 127.15551 * 359.97438 * 21 20 19 23 23 C 1.51586 * 105.68676 * 179.97438 * 21 20 19 24 24 N 1.47312 * 103.58909 * 0.31216 * 23 21 20 25 25 C 1.33794 * 124.17442 * 90.01849 * 20 19 18 26 26 O 1.21538 * 123.77219 * 359.97229 * 25 20 19 27 27 C 1.46927 * 118.73502 * 306.09186 * 14 13 12 28 28 H 0.96997 * 120.00486 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46191 * 301.33859 * 11 9 7 30 30 H 1.08993 * 109.46248 * 61.30523 * 11 9 7 31 31 H 1.09001 * 109.49358 * 58.58982 * 12 11 9 32 32 H 1.08996 * 109.49382 * 178.65265 * 12 11 9 33 33 H 1.09004 * 109.74052 * 295.11722 * 13 12 11 34 34 H 1.09000 * 109.66311 * 174.54930 * 13 12 11 35 35 H 1.09000 * 109.46864 * 60.00182 * 17 15 14 36 36 H 1.08996 * 109.47195 * 300.00340 * 17 15 14 37 37 H 1.09005 * 109.47230 * 300.00027 * 18 17 15 38 38 H 1.09000 * 109.47290 * 60.00282 * 18 17 15 39 39 H 1.08996 * 109.46886 * 300.00157 * 19 18 17 40 40 H 1.09000 * 109.46899 * 59.99831 * 19 18 17 41 41 H 1.08996 * 110.76153 * 241.71173 * 23 21 20 42 42 H 1.08998 * 110.56941 * 118.82504 * 23 21 20 43 43 H 0.97003 * 126.69040 * 179.77217 * 24 23 21 44 44 H 1.09005 * 109.58367 * 173.65248 * 27 14 13 45 45 H 1.09000 * 109.58322 * 294.07062 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6054 1.9837 -1.3944 5 1 1.3963 2.6817 0.5884 6 1 3.4880 1.4741 0.8060 7 6 2.0046 -1.1940 0.0005 8 1 1.4669 -2.1281 -0.0686 9 6 3.5085 -1.1957 0.0975 10 1 3.9004 -0.2604 -0.3023 11 6 3.9256 -1.3393 1.5629 12 6 5.4523 -1.3082 1.6660 13 6 6.0370 -2.4909 0.8790 14 7 5.5241 -2.4360 -0.4968 15 6 6.3699 -2.4502 -1.5460 16 8 5.9339 -2.4095 -2.6769 17 6 7.8575 -2.5166 -1.3138 18 6 8.5841 -2.5193 -2.6602 19 6 10.0943 -2.5873 -2.4246 20 7 10.7901 -2.5906 -3.7138 21 6 11.1076 -3.7062 -4.4000 22 8 10.8804 -4.8529 -4.0789 23 6 11.8080 -3.2289 -5.6568 24 7 11.8102 -1.7625 -5.5162 25 6 11.1937 -1.4865 -4.3528 26 8 11.0240 -0.3603 -3.9286 27 6 4.0714 -2.3715 -0.7070 28 1 -0.4851 0.8400 -0.0004 29 1 3.5057 -0.5171 2.1423 30 1 3.5545 -2.2862 1.9550 31 1 5.8258 -0.3719 1.2514 32 1 5.7479 -1.3865 2.7121 33 1 5.7341 -3.4288 1.3447 34 1 7.1247 -2.4213 0.8665 35 1 8.0997 -3.4285 -0.7680 36 1 8.1735 -1.6504 -0.7325 37 1 8.2682 -3.3854 -3.2419 38 1 8.3419 -1.6073 -3.2057 39 1 10.4106 -1.7216 -1.8428 40 1 10.3362 -3.4996 -1.8793 41 1 11.2528 -3.5280 -6.5458 42 1 12.8277 -3.6120 -5.6959 43 1 12.1832 -1.1209 -6.1408 44 1 3.8618 -2.2230 -1.7664 45 1 3.6116 -3.2998 -0.3680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347818243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:37 Heat of formation + Delta-G solvation = -88.461735 kcal Electronic energy + Delta-G solvation = -27439.617829 eV Core-core repulsion = 23457.554247 eV Total energy + Delta-G solvation = -3982.063582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.67689 -39.79642 -38.93231 -37.11876 -36.46011 -35.90750 -33.52860 -32.90245 -31.75124 -30.56078 -28.45590 -27.60111 -25.17730 -24.79598 -23.28766 -22.61775 -21.71715 -20.69938 -19.69804 -18.57746 -18.34772 -17.48395 -17.20030 -16.93761 -16.59511 -15.94552 -15.78215 -15.62305 -15.09908 -14.58940 -14.57503 -14.41992 -14.08162 -13.98622 -13.83012 -13.54124 -12.92029 -12.72226 -12.62807 -12.54000 -12.42515 -11.97534 -11.92721 -11.32737 -11.21723 -11.06090 -10.98930 -10.75805 -10.62817 -10.38803 -10.16923 -10.04908 -9.93791 -9.84836 -9.62813 -9.38648 -9.01322 -8.55683 -8.06582 -6.10158 -4.10209 1.22982 1.79757 2.62003 2.71158 2.96433 3.29672 3.37619 3.39643 3.41947 3.57123 4.33018 4.41162 4.49075 4.54098 4.65304 4.74231 4.99841 5.02984 5.11125 5.15321 5.22252 5.26229 5.36960 5.38939 5.47799 5.58348 5.88065 5.90472 6.01378 6.10898 6.16662 6.25014 6.30597 6.39575 6.59434 6.64445 6.70608 6.83825 6.91470 6.96230 7.26222 7.40655 7.72199 7.73411 7.87249 8.46777 8.56148 8.94183 9.52829 11.02826 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.002602 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.697695 B =10757.081838 C =11168.388955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.074 3.926 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.006 3.994 10 H 0.033 0.967 11 C -0.113 4.113 12 C -0.140 4.140 13 C 0.110 3.890 14 N -0.609 5.609 15 C 0.509 3.491 16 O -0.547 6.547 17 C -0.136 4.136 18 C -0.120 4.120 19 C 0.118 3.882 20 N -0.575 5.575 21 C 0.520 3.480 22 O -0.466 6.466 23 C 0.062 3.938 24 N -0.731 5.731 25 C 0.700 3.300 26 O -0.537 6.537 27 C 0.123 3.877 28 H 0.264 0.736 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.123 0.877 43 H 0.441 0.559 44 H 0.085 0.915 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.695 -6.757 -5.879 29.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.128 4.128 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.551 4.551 8 H 0.093 0.907 9 C -0.014 4.014 10 H 0.051 0.949 11 C -0.151 4.151 12 C -0.178 4.178 13 C -0.014 4.014 14 N -0.342 5.342 15 C 0.296 3.704 16 O -0.426 6.426 17 C -0.177 4.177 18 C -0.159 4.159 19 C -0.002 4.002 20 N -0.321 5.321 21 C 0.307 3.693 22 O -0.336 6.336 23 C -0.066 4.066 24 N -0.396 5.396 25 C 0.400 3.600 26 O -0.410 6.410 27 C 0.002 3.998 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.286 0.714 44 H 0.104 0.896 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 27.006 -6.668 -5.965 28.450 hybrid contribution 0.469 1.230 -0.170 1.327 sum 27.475 -5.438 -6.135 28.672 Atomic orbital electron populations 1.69896 1.06297 1.27065 1.50304 1.25028 0.94674 0.98967 0.94154 0.86868 0.80135 0.83646 0.78916 1.20163 1.21610 1.18946 1.20867 0.88524 0.94708 1.50975 0.90721 1.19452 0.96762 0.94013 0.91157 0.94876 1.21850 0.91450 1.01451 1.00319 1.22111 0.99098 0.97697 0.98885 1.21800 0.98081 0.99198 0.82290 1.48410 1.08354 1.71814 1.05600 1.20445 0.88448 0.76636 0.84849 1.90684 1.78838 1.50522 1.22522 1.21563 0.92997 1.04316 0.98776 1.21663 0.91987 1.04703 0.97534 1.21786 0.92231 1.04844 0.81376 1.46383 1.54462 1.08128 1.23145 1.20907 0.78007 0.84864 0.85551 1.90844 1.52547 1.18049 1.72141 1.22475 1.04105 0.81438 0.98555 1.45433 1.63076 1.07899 1.23214 1.15899 0.78473 0.84311 0.81273 1.91051 1.60154 1.20321 1.69494 1.21949 0.75800 0.99727 1.02316 0.92577 0.92578 0.92608 0.92278 0.91866 0.91500 0.90687 0.88791 0.88665 0.90535 0.90239 0.88333 0.88518 0.85776 0.85900 0.71418 0.89646 0.92239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 2 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 3 Si 0.88 21.85 26.84 -169.99 -4.56 17.29 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.26 -6.26 6.86 56.52 0.39 -5.87 16 7 C -0.51 -14.15 8.87 -34.44 -0.31 -14.46 16 8 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 9 C 0.01 0.13 1.86 -91.66 -0.17 -0.04 16 10 H 0.03 0.81 5.42 -51.92 -0.28 0.53 16 11 C -0.11 -2.22 5.14 -26.69 -0.14 -2.36 16 12 C -0.14 -2.12 6.10 -26.38 -0.16 -2.28 16 13 C 0.11 1.46 6.37 -3.49 -0.02 1.44 16 14 N -0.61 -10.50 2.97 -172.50 -0.51 -11.01 16 15 C 0.51 8.63 7.70 -10.99 -0.08 8.55 16 16 O -0.55 -11.56 15.39 5.56 0.09 -11.47 16 17 C -0.14 -1.55 4.05 -27.88 -0.11 -1.66 16 18 C -0.12 -1.40 4.83 -26.73 -0.13 -1.53 16 19 C 0.12 1.06 5.70 -4.04 -0.02 1.04 16 20 N -0.57 -5.26 2.60 -120.73 -0.31 -5.58 16 21 C 0.52 4.20 8.31 -10.55 -0.09 4.11 16 22 O -0.47 -5.15 17.75 5.60 0.10 -5.05 16 23 C 0.06 0.22 7.97 -4.31 -0.03 0.19 16 24 N -0.73 -3.85 6.58 -65.74 -0.43 -4.28 16 25 C 0.70 6.82 8.62 -88.02 -0.76 6.06 16 26 O -0.54 -7.38 17.48 5.33 0.09 -7.29 16 27 C 0.12 2.58 5.70 -3.71 -0.02 2.55 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.06 1.18 8.01 -51.93 -0.42 0.76 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.74 5.93 -51.93 -0.31 0.44 16 35 H 0.09 0.82 7.93 -51.93 -0.41 0.41 16 36 H 0.10 0.92 7.70 -51.93 -0.40 0.52 16 37 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 38 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 39 H 0.10 0.83 7.86 -51.93 -0.41 0.42 16 40 H 0.10 0.72 8.00 -51.93 -0.42 0.31 16 41 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 43 H 0.44 1.28 8.96 -40.82 -0.37 0.92 16 44 H 0.09 1.98 7.01 -51.93 -0.36 1.62 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 367.72 15.07 5.54 5.54 Total: -1.00 -37.39 367.72 -8.12 -45.51 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -6.74 Total: -0.71 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.15 Total: 3.65 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.49 Total: -47.46 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: 0.28 Total: -23.81 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.56 Total: 17.29 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.39 -8.12 -45.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347818243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.955 kcal (2) G-P(sol) polarization free energy of solvation -37.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds