Wall clock time and date at job start Tue Mar 31 2020 14:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 119.99720 * 2 1 4 4 H 1.48493 * 109.47112 * 264.85334 * 3 2 1 5 5 H 1.48501 * 109.46991 * 24.85295 * 3 2 1 6 6 H 1.48496 * 109.46772 * 144.85074 * 3 2 1 7 7 C 1.37872 * 120.00411 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99955 * 4.26567 * 7 2 1 9 9 C 1.50700 * 120.00525 * 184.26247 * 7 2 1 10 10 H 1.09009 * 109.51820 * 333.50912 * 9 7 2 11 11 C 1.53036 * 109.49488 * 93.58412 * 9 7 2 12 12 C 1.53049 * 109.53654 * 181.32056 * 11 9 7 13 13 C 1.53623 * 109.23974 * 298.51237 * 12 11 9 14 14 N 1.46927 * 108.54339 * 54.85810 * 13 12 11 15 15 C 1.34774 * 120.62955 * 126.36813 * 14 13 12 16 16 O 1.21279 * 119.99962 * 179.72159 * 15 14 13 17 17 C 1.50702 * 120.00144 * 359.71547 * 15 14 13 18 18 C 1.52998 * 109.47009 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.47284 * 180.02562 * 18 17 15 20 20 N 1.46498 * 109.47601 * 179.97438 * 19 18 17 21 21 C 1.34766 * 124.18048 * 269.73331 * 20 19 18 22 22 O 1.21230 * 127.15551 * 359.97438 * 21 20 19 23 23 C 1.51586 * 105.68676 * 179.97438 * 21 20 19 24 24 N 1.47312 * 103.58909 * 0.31216 * 23 21 20 25 25 C 1.33794 * 124.17442 * 90.01849 * 20 19 18 26 26 O 1.21538 * 123.77219 * 359.97229 * 25 20 19 27 27 C 1.46927 * 118.73502 * 306.09186 * 14 13 12 28 28 H 0.96997 * 120.00486 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46191 * 301.33859 * 11 9 7 30 30 H 1.08993 * 109.46248 * 61.30523 * 11 9 7 31 31 H 1.09001 * 109.49358 * 58.58982 * 12 11 9 32 32 H 1.08996 * 109.49382 * 178.65265 * 12 11 9 33 33 H 1.09004 * 109.74052 * 295.11722 * 13 12 11 34 34 H 1.09000 * 109.66311 * 174.54930 * 13 12 11 35 35 H 1.09000 * 109.46864 * 60.00182 * 17 15 14 36 36 H 1.08996 * 109.47195 * 300.00340 * 17 15 14 37 37 H 1.09005 * 109.47230 * 300.00027 * 18 17 15 38 38 H 1.09000 * 109.47290 * 60.00282 * 18 17 15 39 39 H 1.08996 * 109.46886 * 300.00157 * 19 18 17 40 40 H 1.09000 * 109.46899 * 59.99831 * 19 18 17 41 41 H 1.08996 * 110.76153 * 241.71173 * 23 21 20 42 42 H 1.08998 * 110.56941 * 118.82504 * 23 21 20 43 43 H 0.97003 * 126.69040 * 179.77217 * 24 23 21 44 44 H 1.09005 * 109.58367 * 173.65248 * 27 14 13 45 45 H 1.09000 * 109.58322 * 294.07062 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.6054 1.9837 -1.3944 5 1 1.3963 2.6817 0.5884 6 1 3.4880 1.4741 0.8060 7 6 2.0046 -1.1940 0.0005 8 1 1.4669 -2.1281 -0.0686 9 6 3.5085 -1.1957 0.0975 10 1 3.9004 -0.2604 -0.3023 11 6 3.9256 -1.3393 1.5629 12 6 5.4523 -1.3082 1.6660 13 6 6.0370 -2.4909 0.8790 14 7 5.5241 -2.4360 -0.4968 15 6 6.3699 -2.4502 -1.5460 16 8 5.9339 -2.4095 -2.6769 17 6 7.8575 -2.5166 -1.3138 18 6 8.5841 -2.5193 -2.6602 19 6 10.0943 -2.5873 -2.4246 20 7 10.7901 -2.5906 -3.7138 21 6 11.1076 -3.7062 -4.4000 22 8 10.8804 -4.8529 -4.0789 23 6 11.8080 -3.2289 -5.6568 24 7 11.8102 -1.7625 -5.5162 25 6 11.1937 -1.4865 -4.3528 26 8 11.0240 -0.3603 -3.9286 27 6 4.0714 -2.3715 -0.7070 28 1 -0.4851 0.8400 -0.0004 29 1 3.5057 -0.5171 2.1423 30 1 3.5545 -2.2862 1.9550 31 1 5.8258 -0.3719 1.2514 32 1 5.7479 -1.3865 2.7121 33 1 5.7341 -3.4288 1.3447 34 1 7.1247 -2.4213 0.8665 35 1 8.0997 -3.4285 -0.7680 36 1 8.1735 -1.6504 -0.7325 37 1 8.2682 -3.3854 -3.2419 38 1 8.3419 -1.6073 -3.2057 39 1 10.4106 -1.7216 -1.8428 40 1 10.3362 -3.4996 -1.8793 41 1 11.2528 -3.5280 -6.5458 42 1 12.8277 -3.6120 -5.6959 43 1 12.1832 -1.1209 -6.1408 44 1 3.8618 -2.2230 -1.7664 45 1 3.6116 -3.2998 -0.3680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347818243.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:36 Heat of formation + Delta-G solvation = -117.559610 kcal Electronic energy + Delta-G solvation = -27440.879608 eV Core-core repulsion = 23457.554247 eV Total energy + Delta-G solvation = -3983.325361 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.30017 -41.16098 -39.65011 -38.56951 -37.18664 -36.68092 -35.30178 -33.96446 -33.36815 -32.12993 -29.19818 -28.36039 -26.96947 -26.08710 -23.96499 -23.60326 -23.18778 -21.36848 -21.25985 -19.93756 -19.11840 -18.88845 -18.18449 -17.97675 -17.65150 -16.91987 -16.84393 -16.39802 -16.30264 -16.20473 -15.45130 -15.29416 -15.18020 -15.07273 -14.97059 -14.63437 -14.48050 -14.20619 -13.98822 -13.80561 -13.53038 -13.05447 -13.03555 -12.95111 -12.77431 -12.45937 -12.03720 -11.93130 -11.88917 -11.83327 -11.56841 -11.40282 -11.31812 -11.10724 -10.94776 -10.72720 -10.65416 -10.40972 -9.52934 -8.33922 -6.36984 0.62262 1.20319 1.28456 1.31294 1.40751 1.66865 1.92236 2.12907 2.29656 2.30232 3.02898 3.06748 3.51238 3.75107 3.84417 4.04147 4.10291 4.15647 4.18068 4.27917 4.32268 4.41063 4.41754 4.45198 4.52855 4.60470 4.62331 4.70644 4.77604 4.82551 4.95309 5.00839 5.03049 5.12057 5.18620 5.26289 5.43425 5.52436 5.68744 5.76817 5.83936 6.03811 6.25219 6.38935 6.56283 6.69501 7.10285 7.23053 7.28695 8.82951 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020231 B = 0.002602 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.697695 B =10757.081838 C =11168.388955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.240 1.240 7 C -0.515 4.515 8 H 0.036 0.964 9 C 0.006 3.994 10 H 0.020 0.980 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.105 3.895 14 N -0.612 5.612 15 C 0.498 3.502 16 O -0.601 6.601 17 C -0.123 4.123 18 C -0.112 4.112 19 C 0.120 3.880 20 N -0.582 5.582 21 C 0.514 3.486 22 O -0.500 6.500 23 C 0.072 3.928 24 N -0.712 5.712 25 C 0.693 3.307 26 O -0.586 6.586 27 C 0.133 3.867 28 H 0.266 0.734 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.055 0.945 38 H 0.046 0.954 39 H 0.107 0.893 40 H 0.118 0.882 41 H 0.151 0.849 42 H 0.163 0.837 43 H 0.453 0.547 44 H 0.049 0.951 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.241 -7.100 -4.886 33.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.207 1.207 5 H -0.210 1.210 6 H -0.164 1.164 7 C -0.553 4.553 8 H 0.054 0.946 9 C -0.014 4.014 10 H 0.039 0.961 11 C -0.149 4.149 12 C -0.171 4.171 13 C -0.016 4.016 14 N -0.343 5.343 15 C 0.289 3.711 16 O -0.483 6.483 17 C -0.163 4.163 18 C -0.151 4.151 19 C -0.001 4.001 20 N -0.327 5.327 21 C 0.303 3.697 22 O -0.372 6.372 23 C -0.054 4.054 24 N -0.377 5.377 25 C 0.393 3.607 26 O -0.463 6.463 27 C 0.010 3.990 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.142 0.858 35 H 0.152 0.848 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.169 0.831 42 H 0.180 0.820 43 H 0.300 0.700 44 H 0.068 0.932 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 31.618 -7.039 -4.973 32.771 hybrid contribution -1.001 1.208 -0.555 1.664 sum 30.617 -5.831 -5.528 31.654 Atomic orbital electron populations 1.70037 1.08075 1.28035 1.52574 1.25856 0.95418 1.02744 0.94235 0.85878 0.79769 0.79203 0.78876 1.20710 1.20954 1.16351 1.21195 0.91307 0.93152 1.49688 0.94608 1.19404 0.93561 0.94228 0.94184 0.96134 1.21694 0.95549 1.00953 0.96702 1.22072 0.94836 0.98414 1.01759 1.22186 1.00810 0.99232 0.79412 1.48466 1.06418 1.71625 1.07820 1.21533 0.90734 0.75029 0.83821 1.90664 1.80123 1.52712 1.24810 1.21620 0.87961 1.07513 0.99234 1.21527 0.94177 1.02050 0.97320 1.21776 0.90092 1.06276 0.81927 1.46501 1.54281 1.08550 1.23394 1.21602 0.77472 0.84087 0.86515 1.90829 1.54057 1.19134 1.73197 1.22735 1.06043 0.79775 0.96878 1.45425 1.61373 1.09189 1.21731 1.16120 0.78659 0.83693 0.82220 1.91013 1.62299 1.22022 1.70940 1.21430 0.79123 0.98743 0.99699 0.92498 0.94098 0.92453 0.92686 0.87879 0.89709 0.85754 0.84778 0.85734 0.92632 0.93498 0.87473 0.86427 0.83116 0.82009 0.69958 0.93213 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 2 C 0.01 0.88 5.47 84.65 0.46 1.34 16 3 Si 0.94 45.92 26.84 68.60 1.84 47.76 16 4 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 6 H -0.24 -10.69 6.86 99.48 0.68 -10.01 16 7 C -0.51 -29.73 8.87 25.60 0.23 -29.50 16 8 H 0.04 2.28 8.06 -2.91 -0.02 2.25 16 9 C 0.01 0.28 1.86 -11.47 -0.02 0.25 16 10 H 0.02 1.00 5.42 -2.38 -0.01 0.99 16 11 C -0.11 -4.20 5.14 30.62 0.16 -4.04 16 12 C -0.13 -3.47 6.10 30.82 0.19 -3.28 16 13 C 0.10 2.31 6.37 86.51 0.55 2.86 16 14 N -0.61 -20.04 2.97 -818.07 -2.43 -22.47 16 15 C 0.50 16.36 7.70 87.66 0.67 17.04 16 16 O -0.60 -26.20 15.39 -3.03 -0.05 -26.25 16 17 C -0.12 -2.40 4.05 29.85 0.12 -2.28 16 18 C -0.11 -2.48 4.83 30.59 0.15 -2.33 16 19 C 0.12 1.90 5.70 86.38 0.49 2.39 16 20 N -0.58 -9.73 2.60 -773.14 -2.01 -11.74 16 21 C 0.51 7.24 8.31 87.94 0.73 7.98 16 22 O -0.50 -10.25 17.75 -2.88 -0.05 -10.30 16 23 C 0.07 0.27 7.97 85.76 0.68 0.95 16 24 N -0.71 -5.72 6.58 -480.31 -3.16 -8.88 16 25 C 0.69 12.59 8.62 179.44 1.55 14.14 16 26 O -0.59 -15.88 17.48 -3.83 -0.07 -15.95 16 27 C 0.13 5.71 5.70 86.36 0.49 6.20 16 28 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 29 H 0.04 1.65 8.01 -2.39 -0.02 1.63 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.12 1.60 5.93 -2.39 -0.01 1.59 16 35 H 0.13 1.61 7.93 -2.39 -0.02 1.59 16 36 H 0.12 1.79 7.70 -2.39 -0.02 1.77 16 37 H 0.05 1.45 8.10 -2.38 -0.02 1.43 16 38 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.11 1.53 7.86 -2.39 -0.02 1.51 16 40 H 0.12 1.37 8.00 -2.39 -0.02 1.35 16 41 H 0.15 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.16 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.45 1.47 8.96 -92.71 -0.83 0.64 16 44 H 0.05 2.45 7.01 -2.38 -0.02 2.44 16 45 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -90.37 367.72 0.99 -89.38 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 0.16 Total: 6.65 kcal Atomic # 6 Polarization: 5.25 SS G_CDS: 6.45 Total: 11.71 kcal Atomic # 7 Polarization: -95.70 SS G_CDS: -7.30 Total: -103.00 kcal Atomic # 8 Polarization: -52.34 SS G_CDS: -0.16 Total: -52.50 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 1.84 Total: 47.76 kcal Total: -90.37 0.99 -89.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347818243.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.179 kcal (2) G-P(sol) polarization free energy of solvation -90.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds