Wall clock time and date at job start Tue Mar 31 2020 13:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46491 * 109.47361 * 2 1 4 4 C 1.46507 * 119.99974 * 272.41618 * 3 2 1 5 5 C 1.52995 * 109.47208 * 270.00270 * 4 3 2 6 6 O 1.42898 * 109.47210 * 299.99814 * 5 4 3 7 7 C 1.42899 * 114.00242 * 203.84846 * 6 5 4 8 8 O 1.42905 * 109.47308 * 59.99519 * 5 4 3 9 9 C 1.42901 * 114.00220 * 166.24394 * 8 5 4 10 10 C 1.34780 * 120.00328 * 92.41505 * 3 2 1 11 11 O 1.21589 * 119.99753 * 175.68833 * 10 3 2 12 12 C 1.47529 * 119.99813 * 355.69231 * 10 3 2 13 13 C 1.39670 * 120.19855 * 58.13845 * 12 10 3 14 14 C 1.37829 * 119.91562 * 180.02562 * 13 12 10 15 15 C 1.38571 * 120.32751 * 0.02562 * 14 13 12 16 16 C 1.38025 * 120.39802 * 0.02562 * 15 14 13 17 17 C 1.38829 * 120.07501 * 359.95304 * 16 15 14 18 18 O 1.35525 * 120.16259 * 180.02562 * 17 16 15 19 19 C 1.34813 * 116.99904 * 354.17716 * 18 17 16 20 20 H 1.08009 * 120.00022 * 5.08290 * 19 18 17 21 21 C 1.38702 * 120.00295 * 185.08719 * 19 18 17 22 22 N 1.31520 * 119.99366 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00260 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47178 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.46855 * 119.99856 * 23 21 19 26 26 H 1.48494 * 109.47289 * 239.99737 * 23 21 19 27 27 H 1.08998 * 109.46635 * 300.00536 * 1 2 3 28 28 H 1.09002 * 109.46534 * 60.00343 * 1 2 3 29 29 H 1.08999 * 109.47193 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46635 * 239.99464 * 2 1 3 31 31 H 1.09002 * 109.46534 * 119.99657 * 2 1 3 32 32 H 1.09002 * 109.46619 * 30.00006 * 4 3 2 33 33 H 1.08998 * 109.47170 * 149.99547 * 4 3 2 34 34 H 1.08998 * 109.47061 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47120 * 65.41729 * 7 6 5 36 36 H 1.09001 * 109.47226 * 185.42485 * 7 6 5 37 37 H 1.09001 * 109.46813 * 305.41800 * 7 6 5 38 38 H 1.09004 * 109.46961 * 313.48505 * 9 8 5 39 39 H 1.09004 * 109.46881 * 73.47925 * 9 8 5 40 40 H 1.08996 * 109.47310 * 193.47927 * 9 8 5 41 41 H 1.07998 * 120.03710 * 0.27721 * 13 12 10 42 42 H 1.07997 * 119.83430 * 179.97438 * 14 13 12 43 43 H 1.07999 * 119.79891 * 179.97438 * 15 14 13 44 44 H 1.08008 * 119.95830 * 179.97438 * 16 15 14 45 45 H 0.97001 * 119.99411 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2122 2.0896 -1.2677 5 6 3.6384 1.8557 -1.7698 6 8 4.5700 2.3454 -0.8033 7 6 5.8492 2.6791 -1.3459 8 8 3.8499 0.4565 -1.9688 9 6 5.0245 0.1475 -2.7218 10 6 2.2895 2.0001 1.1662 11 8 2.7686 3.1176 1.1642 12 6 2.0049 1.3217 2.4449 13 6 2.5928 0.0876 2.7315 14 6 2.3225 -0.5413 3.9278 15 6 1.4690 0.0444 4.8490 16 6 0.8800 1.2631 4.5790 17 6 1.1410 1.9114 3.3795 18 8 0.5641 3.1084 3.1127 19 6 -0.3466 3.5597 3.9984 20 1 -0.5268 3.0143 4.9131 21 6 -1.0522 4.7245 3.7350 22 7 -0.8324 5.3887 2.6214 23 14 -2.3146 5.3495 4.9619 24 1 -2.3734 4.4277 6.1247 25 1 -1.9259 6.7062 5.4243 26 1 -3.6482 5.4113 4.3119 27 1 -0.3632 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5016 1.7159 -2.0049 33 1 2.0508 3.1568 -1.1158 34 1 3.7824 2.3824 -2.7131 35 1 5.7450 3.5207 -2.0308 36 1 6.5274 2.9507 -0.5370 37 1 6.2508 1.8204 -1.8839 38 1 5.0708 0.7886 -3.6021 39 1 5.9067 0.3147 -2.1038 40 1 4.9919 -0.8964 -3.0338 41 1 3.2615 -0.3713 2.0183 42 1 2.7774 -1.4958 4.1478 43 1 1.2628 -0.4561 5.7835 44 1 0.2155 1.7130 5.3020 45 1 -1.3256 6.2035 2.4374 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350397540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:03 Heat of formation + Delta-G solvation = -131.378931 kcal Electronic energy + Delta-G solvation = -29096.636468 eV Core-core repulsion = 25080.419105 eV Total energy + Delta-G solvation = -4016.217363 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.47599 -40.41626 -39.51839 -38.01563 -36.93571 -36.70827 -34.32084 -32.78920 -31.70606 -30.63712 -29.93506 -27.77840 -27.32784 -26.87903 -25.02482 -24.15148 -23.30929 -22.82451 -20.52156 -19.89107 -18.82074 -18.37130 -18.32102 -17.70408 -17.10841 -16.86715 -16.43619 -16.33574 -15.67489 -15.50789 -15.33363 -15.28520 -15.20973 -14.75673 -14.54454 -14.42258 -14.38836 -14.13777 -13.57583 -13.54034 -13.35821 -13.18765 -13.06459 -12.84886 -12.69108 -12.54943 -12.40718 -12.33730 -12.19374 -12.09752 -11.79099 -11.40753 -10.95809 -10.83311 -10.68173 -10.55541 -9.77865 -9.47638 -9.01886 -8.46224 -6.15952 0.32041 0.72667 1.32924 1.42829 1.52445 1.90165 2.16023 2.18129 2.66053 2.83342 2.88620 3.16890 3.44522 3.73550 3.80170 3.98119 4.12369 4.18668 4.21016 4.27664 4.36275 4.39906 4.41532 4.47167 4.55793 4.57011 4.62384 4.67489 4.69995 4.74255 4.91064 4.94353 4.99631 5.01072 5.10366 5.16275 5.38902 5.55339 5.60712 5.71691 5.72089 5.98000 6.08976 6.18326 6.20954 6.56154 6.95790 7.45184 7.78577 8.76268 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.004312 C = 0.003819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.870971 B = 6492.603172 C = 7329.872382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.128 3.872 5 C 0.231 3.769 6 O -0.407 6.407 7 C 0.010 3.990 8 O -0.398 6.398 9 C 0.016 3.984 10 C 0.574 3.426 11 O -0.569 6.569 12 C -0.219 4.219 13 C -0.042 4.042 14 C -0.189 4.189 15 C -0.050 4.050 16 C -0.248 4.248 17 C 0.145 3.855 18 O -0.215 6.215 19 C -0.418 4.418 20 H 0.106 0.894 21 C -0.023 4.023 22 N -0.915 5.915 23 Si 1.021 2.979 24 H -0.246 1.246 25 H -0.271 1.271 26 H -0.267 1.267 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.104 0.896 41 H 0.145 0.855 42 H 0.162 0.838 43 H 0.154 0.846 44 H 0.124 0.876 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.911 -15.553 -9.203 19.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.329 5.329 4 C 0.005 3.995 5 C 0.135 3.865 6 O -0.328 6.328 7 C -0.085 4.085 8 O -0.319 6.319 9 C -0.080 4.080 10 C 0.363 3.637 11 O -0.447 6.447 12 C -0.223 4.223 13 C -0.060 4.060 14 C -0.208 4.208 15 C -0.068 4.068 16 C -0.267 4.267 17 C 0.092 3.908 18 O -0.120 6.120 19 C -0.494 4.494 20 H 0.123 0.877 21 C -0.221 4.221 22 N -0.552 5.552 23 Si 0.840 3.160 24 H -0.169 1.169 25 H -0.196 1.196 26 H -0.192 1.192 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.162 0.838 42 H 0.180 0.820 43 H 0.172 0.828 44 H 0.142 0.858 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.950 -14.732 -9.256 19.129 hybrid contribution -0.249 1.296 0.071 1.322 sum 7.700 -13.436 -9.185 18.005 Atomic orbital electron populations 1.22137 0.96389 1.02893 1.00713 1.21924 0.93873 0.80972 1.04899 1.47604 1.65793 1.15247 1.04242 1.21577 0.93641 0.98031 0.86285 1.23894 0.90093 0.81236 0.91290 1.88281 1.24044 1.83222 1.37244 1.23256 0.84768 1.00308 1.00182 1.87999 1.44841 1.24409 1.74650 1.23197 0.87092 1.03098 0.94580 1.18356 0.76200 0.84531 0.84601 1.90716 1.44740 1.21429 1.87842 1.19135 1.08073 0.99464 0.95647 1.21061 0.96507 0.90616 0.97858 1.21120 1.02963 1.02582 0.94094 1.21352 0.93316 0.92493 0.99617 1.21275 1.08092 0.99685 0.97645 1.19834 0.91976 0.85495 0.93472 1.83994 1.50449 1.29479 1.48091 1.21973 1.16529 1.09601 1.01313 0.87668 1.26690 1.00243 0.95498 0.99628 1.70263 1.41734 1.17045 1.26196 0.84505 0.76085 0.78472 0.76931 1.16928 1.19639 1.19168 0.96205 0.92567 0.88924 0.87484 0.89351 0.85736 0.91363 0.89808 0.93118 0.90235 0.91102 0.92431 0.93650 0.87770 0.83762 0.82026 0.82797 0.85840 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.75 10.24 71.99 0.74 -4.02 16 2 C 0.10 3.03 5.68 86.38 0.49 3.52 16 3 N -0.60 -22.50 2.35 -825.57 -1.94 -24.43 16 4 C 0.13 4.20 5.62 86.38 0.49 4.69 16 5 C 0.23 6.40 3.16 71.98 0.23 6.63 16 6 O -0.41 -14.07 9.01 -121.05 -1.09 -15.16 16 7 C 0.01 0.25 10.66 113.37 1.21 1.46 16 8 O -0.40 -9.45 9.19 -126.21 -1.16 -10.61 16 9 C 0.02 0.25 9.89 113.37 1.12 1.37 16 10 C 0.57 28.07 6.32 86.69 0.55 28.62 16 11 O -0.57 -33.70 15.54 11.19 0.17 -33.52 16 12 C -0.22 -10.16 5.02 -19.99 -0.10 -10.26 16 13 C -0.04 -1.47 7.60 22.52 0.17 -1.30 16 14 C -0.19 -5.58 10.02 22.25 0.22 -5.35 16 15 C -0.05 -1.63 10.03 22.30 0.22 -1.41 16 16 C -0.25 -10.91 9.16 22.36 0.20 -10.71 16 17 C 0.15 7.68 6.66 22.91 0.15 7.83 16 18 O -0.22 -13.83 9.08 -20.03 -0.18 -14.02 16 19 C -0.42 -25.43 9.49 67.93 0.64 -24.78 16 20 H 0.11 5.78 5.21 -2.91 -0.02 5.76 16 21 C -0.02 -1.34 5.49 84.85 0.47 -0.88 16 22 N -0.92 -59.46 13.67 21.62 0.30 -59.16 16 23 Si 1.02 44.47 29.55 68.60 2.03 46.49 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.11 2.50 7.01 -2.39 -0.02 2.48 16 31 H 0.09 2.51 4.15 -2.39 -0.01 2.50 16 32 H 0.12 3.11 8.07 -2.39 -0.02 3.10 16 33 H 0.07 2.72 7.48 -2.39 -0.02 2.70 16 34 H 0.08 1.82 7.62 -2.39 -0.02 1.80 16 35 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.07 1.29 4.56 -2.39 -0.01 1.28 16 38 H 0.06 0.70 7.86 -2.38 -0.02 0.68 16 39 H 0.05 0.73 5.86 -2.38 -0.01 0.72 16 40 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.14 4.23 7.16 -2.91 -0.02 4.21 16 42 H 0.16 3.25 8.06 -2.91 -0.02 3.23 16 43 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 44 H 0.12 5.48 5.64 -2.91 -0.02 5.47 16 45 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -89.67 368.67 5.94 -83.74 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 1.01 Total: 31.26 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 6.80 Total: -4.59 kcal Atomic # 7 Polarization: -81.95 SS G_CDS: -1.64 Total: -83.60 kcal Atomic # 8 Polarization: -71.05 SS G_CDS: -2.26 Total: -73.31 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -89.67 5.94 -83.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350397540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.642 kcal (2) G-P(sol) polarization free energy of solvation -89.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds