Wall clock time and date at job start Tue Mar 31 2020 14:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99946 * 2 1 4 4 H 1.08996 * 109.47556 * 30.00053 * 3 2 1 5 5 C 1.53006 * 109.47126 * 149.99873 * 3 2 1 6 6 N 1.46900 * 109.47078 * 299.99849 * 5 3 2 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 3 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38255 * 120.11174 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05063 * 359.76900 * 10 9 8 12 12 C 1.38710 * 119.94702 * 0.48231 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.76528 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 C 1.50704 * 109.47355 * 269.99739 * 3 2 1 26 26 O 1.20831 * 119.99597 * 355.00240 * 25 3 2 27 27 O 1.34222 * 120.00348 * 175.00257 * 25 3 2 28 28 H 1.08999 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47048 * 300.00393 * 1 2 3 30 30 H 1.09005 * 109.47023 * 60.00002 * 1 2 3 31 31 H 1.08996 * 109.47046 * 179.97438 * 5 3 2 32 32 H 1.09006 * 109.46798 * 59.99787 * 5 3 2 33 33 H 1.00903 * 110.99490 * 56.04411 * 6 5 3 34 34 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 35 35 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 36 36 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 37 37 H 1.07991 * 119.97457 * 180.02562 * 10 9 8 38 38 H 1.08006 * 120.02763 * 180.24929 * 11 10 9 39 39 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 40 40 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 45 45 H 0.96702 * 117.00092 * 179.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2632 0.7213 6 7 3.1597 0.8160 2.1063 7 6 4.4363 0.7626 2.8311 8 6 4.1924 0.3014 4.2449 9 6 3.9316 1.2273 5.2383 10 6 3.7069 0.8073 6.5362 11 6 3.7378 -0.5396 6.8427 12 6 4.0045 -1.4699 5.8490 13 8 4.0402 -2.7949 6.1491 14 6 3.7997 -3.1587 7.5099 15 6 3.8794 -4.6799 7.6529 16 6 3.6252 -5.0636 9.0879 17 1 3.4263 -4.2990 9.8242 18 6 3.6456 -6.3909 9.4606 19 7 3.8875 -7.3220 8.5639 20 14 3.3313 -6.8665 11.2395 21 1 1.9808 -6.4006 11.6451 22 1 3.4073 -8.3429 11.3780 23 1 4.3550 -6.2337 12.1094 24 6 4.2292 -1.0459 4.5472 25 6 2.2146 1.7644 -1.4208 26 8 1.9801 1.0134 -2.3379 27 8 2.6571 3.0073 -1.6676 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8024 2.2589 0.7209 32 1 4.0242 0.5693 0.2074 33 1 2.6909 -0.0771 2.1339 34 1 4.8875 1.7547 2.8457 35 1 5.1088 0.0650 2.3318 36 1 3.9025 2.2802 4.9998 37 1 3.5030 1.5322 7.3102 38 1 3.5583 -0.8675 7.8560 39 1 4.5506 -2.6935 8.1485 40 1 2.8081 -2.8177 7.8074 41 1 3.1282 -5.1447 7.0143 42 1 4.8708 -5.0214 7.3553 43 1 3.9014 -8.2558 8.8260 44 1 4.4330 -1.7686 3.7709 45 1 2.7732 3.2560 -2.5949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353956004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:21 Heat of formation + Delta-G solvation = -156.937119 kcal Electronic energy + Delta-G solvation = -25959.049934 eV Core-core repulsion = 21941.724285 eV Total energy + Delta-G solvation = -4017.325649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.93062 -39.82276 -38.48892 -37.56679 -36.51491 -35.78285 -33.38333 -32.12713 -30.83395 -29.85195 -29.09830 -26.83556 -25.89777 -24.89624 -23.42200 -22.26520 -21.82504 -21.58679 -20.16526 -18.71230 -17.82380 -17.57705 -17.20231 -16.44133 -16.16759 -15.90746 -15.60936 -15.38395 -15.32935 -14.96622 -14.88732 -14.67663 -14.48007 -14.25328 -13.52021 -13.14373 -12.89496 -12.66722 -12.53294 -12.42948 -12.29654 -12.10395 -11.96845 -11.64280 -11.44150 -11.35291 -11.32749 -11.25271 -10.85862 -10.74173 -10.45824 -10.18787 -9.85559 -9.66211 -9.31596 -8.92581 -8.63994 -8.44859 -7.83682 -6.10409 -4.15227 1.40713 1.64919 1.70162 2.34726 3.20881 3.28490 3.32912 3.34594 3.71099 3.84415 4.12978 4.35051 4.40557 4.48947 4.73803 4.75633 4.91354 4.96132 5.01899 5.09044 5.17798 5.24706 5.25811 5.30421 5.37001 5.42682 5.49787 5.66218 5.81572 5.97144 6.03265 6.06135 6.17509 6.43368 6.53695 6.54298 6.56382 6.71182 6.73216 6.98128 7.05550 7.39414 7.50309 7.63775 7.81065 8.06295 8.23569 8.90117 9.48994 11.01069 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.001921 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.983271 B =14573.974893 C =15488.906376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.103 3.897 4 H 0.112 0.888 5 C 0.069 3.931 6 N -0.680 5.680 7 C 0.103 3.897 8 C -0.053 4.053 9 C -0.148 4.148 10 C -0.082 4.082 11 C -0.210 4.210 12 C 0.145 3.855 13 O -0.316 6.316 14 C 0.065 3.935 15 C 0.025 3.975 16 C -0.527 4.527 17 H 0.058 0.942 18 C 0.060 3.940 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 C -0.155 4.155 25 C 0.455 3.545 26 O -0.499 6.499 27 O -0.514 6.514 28 H 0.096 0.904 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.046 0.954 33 H 0.356 0.644 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.129 0.871 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.028 0.972 42 H 0.027 0.973 43 H 0.264 0.736 44 H 0.125 0.875 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.827 23.384 -17.421 29.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.042 3.958 4 H 0.129 0.871 5 C -0.060 4.060 6 N -0.313 5.313 7 C -0.025 4.025 8 C -0.053 4.053 9 C -0.167 4.167 10 C -0.100 4.100 11 C -0.229 4.229 12 C 0.098 3.902 13 O -0.229 6.229 14 C -0.009 4.009 15 C -0.012 4.012 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.142 4.142 19 N -0.527 5.527 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.174 4.174 25 C 0.295 3.705 26 O -0.385 6.385 27 O -0.327 6.327 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.118 0.882 32 H 0.064 0.936 33 H 0.175 0.825 34 H 0.101 0.899 35 H 0.061 0.939 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.147 0.853 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.143 0.857 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -2.945 23.115 -17.190 28.956 hybrid contribution -0.028 -0.707 0.102 0.715 sum -2.973 22.409 -17.088 28.337 Atomic orbital electron populations 1.22979 0.79609 1.04038 1.00328 1.88033 1.21092 1.24158 1.93786 1.21697 0.98719 0.87584 0.87774 0.87087 1.21943 0.92586 1.02510 0.89005 1.60493 1.22365 1.36801 1.11641 1.20840 0.90199 1.01156 0.90350 1.19333 0.99156 0.92285 0.94554 1.20755 1.04347 0.99014 0.92602 1.20896 0.97784 0.94940 0.96403 1.21405 1.07824 0.93766 0.99859 1.19145 0.93458 0.84145 0.93455 1.86173 1.84900 1.19431 1.32434 1.23326 0.99025 1.00848 0.77659 1.19119 0.98818 0.85757 0.97482 1.20931 1.49873 0.92383 0.93364 0.92417 1.24995 0.94970 0.96430 0.97816 1.69969 1.48452 1.00632 1.33674 0.86538 0.78883 0.77399 0.84498 1.20096 1.21116 1.20099 1.20294 1.07144 0.95277 0.94681 1.24377 0.73260 0.79295 0.93608 1.90755 1.46336 1.54713 1.46701 1.84545 1.78737 1.32808 1.36569 0.88547 0.92884 0.93853 0.88192 0.93618 0.82470 0.89857 0.93871 0.86311 0.86174 0.85288 0.93147 0.93131 0.95401 0.95416 0.92644 0.85710 0.72983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.29 16 2 O -0.35 -3.41 9.22 -55.14 -0.51 -3.92 16 3 C 0.10 0.79 2.90 -27.88 -0.08 0.71 16 4 H 0.11 0.67 7.79 -51.93 -0.40 0.27 16 5 C 0.07 0.51 5.40 -3.82 -0.02 0.49 16 6 N -0.68 -6.03 6.49 -115.06 -0.75 -6.78 16 7 C 0.10 0.95 5.81 -4.98 -0.03 0.92 16 8 C -0.05 -0.64 5.39 -104.65 -0.56 -1.20 16 9 C -0.15 -1.74 9.70 -39.56 -0.38 -2.12 16 10 C -0.08 -1.04 10.04 -39.60 -0.40 -1.44 16 11 C -0.21 -3.23 9.04 -39.43 -0.36 -3.59 16 12 C 0.14 2.50 6.69 -39.22 -0.26 2.23 16 13 O -0.32 -6.51 10.14 -19.43 -0.20 -6.70 16 14 C 0.07 1.40 4.68 37.16 0.17 1.58 16 15 C 0.03 0.67 5.34 -27.89 -0.15 0.52 16 16 C -0.53 -14.69 9.11 -34.44 -0.31 -15.01 16 17 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C -0.15 -2.27 9.64 -39.43 -0.38 -2.65 16 25 C 0.45 3.77 7.61 36.01 0.27 4.04 16 26 O -0.50 -5.95 17.26 -25.47 -0.44 -6.39 16 27 O -0.51 -2.74 13.42 -39.24 -0.53 -3.26 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.32 8.08 -51.93 -0.42 -0.10 16 30 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.36 3.56 8.11 -39.29 -0.32 3.24 16 34 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 35 H 0.04 0.39 8.09 -51.93 -0.42 -0.03 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.13 1.97 6.30 -52.48 -0.33 1.64 16 39 H 0.05 1.03 7.67 -51.93 -0.40 0.63 16 40 H 0.05 1.03 7.65 -51.93 -0.40 0.63 16 41 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.41 0.58 9.10 45.56 0.41 1.00 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -33.73 388.25 -8.39 -42.12 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -6.04 Total: 1.22 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -1.49 Total: -12.63 kcal Atomic # 7 Polarization: -32.50 SS G_CDS: -0.01 Total: -32.51 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -1.67 Total: -20.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.73 -8.39 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353956004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.820 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds