Wall clock time and date at job start Tue Mar 31 2020 14:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42897 * 113.99946 * 2 1 4 4 H 1.08996 * 109.47556 * 30.00053 * 3 2 1 5 5 C 1.53006 * 109.47126 * 149.99873 * 3 2 1 6 6 N 1.46900 * 109.47078 * 299.99849 * 5 3 2 7 7 C 1.46896 * 111.00195 * 179.97438 * 6 5 3 8 8 C 1.50697 * 109.47382 * 179.97438 * 7 6 5 9 9 C 1.38280 * 119.97205 * 270.02476 * 8 7 6 10 10 C 1.38255 * 120.11174 * 179.97438 * 9 8 7 11 11 C 1.38163 * 120.05063 * 359.76900 * 10 9 8 12 12 C 1.38710 * 119.94702 * 0.48231 * 11 10 9 13 13 O 1.35900 * 120.05544 * 179.76528 * 12 11 10 14 14 C 1.42898 * 117.00172 * 359.72769 * 13 12 11 15 15 C 1.52997 * 109.47319 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47466 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46756 * 59.99920 * 20 18 16 22 22 H 1.48490 * 109.47381 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47117 * 300.00527 * 20 18 16 24 24 C 1.38129 * 119.97079 * 90.00085 * 8 7 6 25 25 C 1.50704 * 109.47355 * 269.99739 * 3 2 1 26 26 O 1.20831 * 119.99597 * 355.00240 * 25 3 2 27 27 O 1.34222 * 120.00348 * 175.00257 * 25 3 2 28 28 H 1.08999 * 109.47286 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47048 * 300.00393 * 1 2 3 30 30 H 1.09005 * 109.47023 * 60.00002 * 1 2 3 31 31 H 1.08996 * 109.47046 * 179.97438 * 5 3 2 32 32 H 1.09006 * 109.46798 * 59.99787 * 5 3 2 33 33 H 1.00903 * 110.99490 * 56.04411 * 6 5 3 34 34 H 1.09005 * 109.46944 * 59.99947 * 7 6 5 35 35 H 1.09002 * 109.47398 * 300.00389 * 7 6 5 36 36 H 1.08000 * 119.95034 * 0.02562 * 9 8 7 37 37 H 1.07991 * 119.97457 * 180.02562 * 10 9 8 38 38 H 1.08006 * 120.02763 * 180.24929 * 11 10 9 39 39 H 1.09002 * 109.47259 * 300.00149 * 14 13 12 40 40 H 1.09001 * 109.47074 * 60.00171 * 14 13 12 41 41 H 1.09002 * 109.47153 * 300.00307 * 15 14 13 42 42 H 1.08998 * 109.47533 * 59.99936 * 15 14 13 43 43 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 44 44 H 1.07998 * 120.02418 * 0.02613 * 24 8 7 45 45 H 0.96702 * 117.00092 * 179.97438 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 3.3589 1.2632 0.7213 6 7 3.1597 0.8160 2.1063 7 6 4.4363 0.7626 2.8311 8 6 4.1924 0.3014 4.2449 9 6 3.9316 1.2273 5.2383 10 6 3.7069 0.8073 6.5362 11 6 3.7378 -0.5396 6.8427 12 6 4.0045 -1.4699 5.8490 13 8 4.0402 -2.7949 6.1491 14 6 3.7997 -3.1587 7.5099 15 6 3.8794 -4.6799 7.6529 16 6 3.6252 -5.0636 9.0879 17 1 3.4263 -4.2990 9.8242 18 6 3.6456 -6.3909 9.4606 19 7 3.8875 -7.3220 8.5639 20 14 3.3313 -6.8665 11.2395 21 1 1.9808 -6.4006 11.6451 22 1 3.4073 -8.3429 11.3780 23 1 4.3550 -6.2337 12.1094 24 6 4.2292 -1.0459 4.5472 25 6 2.2146 1.7644 -1.4208 26 8 1.9801 1.0134 -2.3379 27 8 2.6571 3.0073 -1.6676 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 3.8024 2.2589 0.7209 32 1 4.0242 0.5693 0.2074 33 1 2.6909 -0.0771 2.1339 34 1 4.8875 1.7547 2.8457 35 1 5.1088 0.0650 2.3318 36 1 3.9025 2.2802 4.9998 37 1 3.5030 1.5322 7.3102 38 1 3.5583 -0.8675 7.8560 39 1 4.5506 -2.6935 8.1485 40 1 2.8081 -2.8177 7.8074 41 1 3.1282 -5.1447 7.0143 42 1 4.8708 -5.0214 7.3553 43 1 3.9014 -8.2558 8.8260 44 1 4.4330 -1.7686 3.7709 45 1 2.7732 3.2560 -2.5949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353956004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:20 Heat of formation + Delta-G solvation = -180.697346 kcal Electronic energy + Delta-G solvation = -25960.080254 eV Core-core repulsion = 21941.724285 eV Total energy + Delta-G solvation = -4018.355970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.55554 -41.04680 -39.18593 -38.70014 -37.15393 -36.57092 -35.45635 -32.96345 -32.56529 -30.87629 -30.31964 -27.43969 -27.12550 -26.41671 -24.19553 -23.35610 -23.29115 -22.31556 -21.49576 -19.33713 -19.13099 -18.27555 -18.15204 -17.81929 -17.06022 -16.96825 -16.92637 -16.79319 -16.48683 -16.09840 -15.70761 -15.57277 -15.29286 -15.18141 -14.37005 -14.33353 -14.31966 -14.23968 -13.74335 -13.39909 -13.11372 -13.03207 -12.95307 -12.72390 -12.60586 -12.55134 -12.50549 -12.31360 -12.22769 -12.05647 -11.80935 -11.57256 -11.57016 -11.38364 -10.81744 -10.61672 -9.85922 -9.44143 -9.05841 -8.26661 -6.40660 0.36220 0.58291 1.02668 1.40831 1.44975 1.53011 1.83824 2.28035 2.52218 2.62688 2.81437 3.07493 3.34835 3.75532 3.85330 3.94678 3.96218 4.18156 4.24607 4.26007 4.26983 4.35128 4.40027 4.46791 4.50032 4.56931 4.61049 4.68812 4.72142 4.74718 4.82689 4.84430 5.15063 5.31708 5.46235 5.46477 5.49442 5.56769 5.66521 5.69318 5.85006 5.91221 5.97360 6.08124 6.28041 6.59647 6.73969 6.90746 7.29428 8.86209 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019266 B = 0.001921 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.983271 B =14573.974893 C =15488.906376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.379 6.379 3 C 0.100 3.900 4 H 0.131 0.869 5 C 0.073 3.927 6 N -0.680 5.680 7 C 0.105 3.895 8 C -0.046 4.046 9 C -0.136 4.136 10 C -0.080 4.080 11 C -0.222 4.222 12 C 0.104 3.896 13 O -0.344 6.344 14 C 0.086 3.914 15 C 0.028 3.972 16 C -0.547 4.547 17 H 0.071 0.929 18 C 0.000 4.000 19 N -0.931 5.931 20 Si 0.977 3.023 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.263 1.263 24 C -0.165 4.165 25 C 0.463 3.537 26 O -0.543 6.543 27 O -0.503 6.503 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.122 0.878 32 H 0.036 0.964 33 H 0.347 0.653 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.125 0.875 39 H 0.059 0.941 40 H 0.059 0.941 41 H -0.003 1.003 42 H -0.003 1.003 43 H 0.267 0.733 44 H 0.120 0.880 45 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.047 26.727 -16.605 31.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.297 6.297 3 C 0.040 3.960 4 H 0.148 0.852 5 C -0.056 4.056 6 N -0.311 5.311 7 C -0.023 4.023 8 C -0.046 4.046 9 C -0.154 4.154 10 C -0.097 4.097 11 C -0.241 4.241 12 C 0.059 3.941 13 O -0.259 6.259 14 C 0.012 3.988 15 C -0.009 4.009 16 C -0.585 4.585 17 H 0.089 0.911 18 C -0.198 4.198 19 N -0.570 5.570 20 Si 0.800 3.200 21 H -0.188 1.188 22 H -0.208 1.208 23 H -0.188 1.188 24 C -0.184 4.184 25 C 0.305 3.695 26 O -0.432 6.432 27 O -0.317 6.317 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.140 0.860 32 H 0.055 0.945 33 H 0.165 0.835 34 H 0.127 0.873 35 H 0.060 0.940 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.143 0.857 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.076 0.924 44 H 0.138 0.862 45 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -3.154 26.523 -16.390 31.338 hybrid contribution 0.066 -1.575 -0.301 1.605 sum -3.089 24.948 -16.690 30.175 Atomic orbital electron populations 1.23069 0.78783 1.04374 1.00988 1.87995 1.22193 1.25615 1.93913 1.21843 0.99177 0.87282 0.87672 0.85159 1.21989 0.92353 1.03321 0.87923 1.60519 1.21920 1.36195 1.12503 1.20885 0.90469 1.02399 0.88505 1.19649 0.97528 0.91029 0.96405 1.21202 1.01828 1.00584 0.91808 1.21263 0.96555 0.94093 0.97834 1.21506 1.08485 0.94903 0.99249 1.19496 0.96590 0.82870 0.95141 1.86078 1.86217 1.22173 1.31389 1.22832 0.99777 0.97335 0.78900 1.18963 0.95958 0.89287 0.96719 1.21368 1.49784 0.93161 0.94148 0.91063 1.26069 0.94391 0.96351 1.03013 1.70122 1.49476 1.01106 1.36303 0.85320 0.79405 0.77057 0.78184 1.18797 1.20798 1.18794 1.20456 1.07578 0.96737 0.93665 1.24458 0.72180 0.79491 0.93357 1.90745 1.48483 1.56065 1.47942 1.84499 1.77749 1.31107 1.38315 0.88552 0.91394 0.93902 0.85975 0.94548 0.83493 0.87283 0.93961 0.82842 0.83156 0.85743 0.92254 0.92272 0.98428 0.98419 0.92448 0.86227 0.70875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.81 113.37 1.23 1.56 16 2 O -0.38 -7.14 9.22 -129.95 -1.20 -8.34 16 3 C 0.10 1.37 2.90 29.85 0.09 1.46 16 4 H 0.13 1.24 7.79 -2.39 -0.02 1.23 16 5 C 0.07 0.91 5.40 86.31 0.47 1.38 16 6 N -0.68 -10.46 6.49 -517.93 -3.36 -13.82 16 7 C 0.11 1.65 5.81 85.56 0.50 2.15 16 8 C -0.05 -1.00 5.39 -19.88 -0.11 -1.11 16 9 C -0.14 -2.68 9.70 22.28 0.22 -2.47 16 10 C -0.08 -1.80 10.04 22.26 0.22 -1.57 16 11 C -0.22 -6.71 9.04 22.36 0.20 -6.51 16 12 C 0.10 3.67 6.69 22.50 0.15 3.82 16 13 O -0.34 -14.92 10.14 -92.43 -0.94 -15.86 16 14 C 0.09 3.83 4.68 71.98 0.34 4.17 16 15 C 0.03 1.55 5.34 29.85 0.16 1.71 16 16 C -0.55 -31.13 9.11 25.60 0.23 -30.89 16 17 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 18 C 0.00 0.02 5.46 84.65 0.46 0.48 16 19 N -0.93 -57.12 13.29 21.45 0.28 -56.83 16 20 Si 0.98 43.64 29.54 68.60 2.03 45.67 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 C -0.17 -4.87 9.64 22.37 0.22 -4.66 16 25 C 0.46 7.03 7.61 71.24 0.54 7.58 16 26 O -0.54 -12.79 17.26 28.37 0.49 -12.30 16 27 O -0.50 -4.12 13.42 -51.34 -0.69 -4.81 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 30 H 0.04 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.04 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.35 6.56 8.11 -89.69 -0.73 5.83 16 34 H 0.11 1.20 8.08 -2.38 -0.02 1.18 16 35 H 0.04 0.69 8.09 -2.39 -0.02 0.67 16 36 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 37 H 0.15 2.47 8.06 -2.92 -0.02 2.44 16 38 H 0.12 3.77 6.30 -2.91 -0.02 3.75 16 39 H 0.06 2.49 7.67 -2.39 -0.02 2.47 16 40 H 0.06 2.48 7.65 -2.39 -0.02 2.46 16 41 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.12 3.52 8.06 -2.91 -0.02 3.50 16 45 H 0.43 0.24 9.10 -74.06 -0.67 -0.43 16 Total: -1.00 -75.91 388.25 1.13 -74.78 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.39 Total: 14.43 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: 4.91 Total: -22.91 kcal Atomic # 7 Polarization: -67.58 SS G_CDS: -3.08 Total: -70.65 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -2.33 Total: -41.31 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -75.91 1.13 -74.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353956004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.919 kcal (2) G-P(sol) polarization free energy of solvation -75.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds