Wall clock time and date at job start Tue Mar 31 2020 13:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46791 * 68.83833 * 3 2 1 5 5 C 1.46899 * 111.00171 * 66.04800 * 4 3 2 6 6 C 1.37891 * 110.99493 * 189.99751 * 4 3 2 7 7 N 1.31867 * 126.33029 * 303.06416 * 6 4 3 8 8 N 1.28530 * 110.08106 * 179.72521 * 7 6 4 9 9 C 1.31829 * 109.82924 * 0.45792 * 8 7 6 10 10 C 1.46888 * 126.48299 * 179.81923 * 9 8 7 11 11 N 1.33080 * 120.33099 * 179.71317 * 10 9 8 12 12 C 1.31474 * 121.62554 * 179.97438 * 11 10 9 13 13 C 1.38864 * 122.19410 * 359.97438 * 12 11 10 14 14 C 1.36704 * 120.45066 * 359.72089 * 13 12 11 15 15 C 1.41277 * 118.37753 * 0.54596 * 14 13 12 16 16 C 1.40653 * 120.99014 * 179.73189 * 15 14 13 17 17 H 1.08009 * 120.00435 * 211.48715 * 16 15 14 18 18 C 1.39995 * 119.99958 * 31.48371 * 16 15 14 19 19 N 1.30825 * 119.99997 * 8.47918 * 18 16 15 20 20 Si 1.86806 * 120.00241 * 188.47906 * 18 16 15 21 21 H 1.48494 * 109.46832 * 265.03320 * 20 18 16 22 22 H 1.48499 * 109.46846 * 25.03311 * 20 18 16 23 23 H 1.48498 * 109.47093 * 145.03414 * 20 18 16 24 24 N 1.36289 * 126.32657 * 123.06796 * 6 4 3 25 25 C 1.46504 * 127.13846 * 359.97438 * 24 6 4 26 26 C 1.50691 * 109.47311 * 265.92530 * 25 24 6 27 27 C 1.30994 * 120.00301 * 125.00119 * 26 25 24 28 28 H 4.40879 * 5.52229 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.47052 * 308.83755 * 3 2 1 30 30 H 1.09003 * 109.47030 * 188.83305 * 3 2 1 31 31 H 1.09004 * 109.47074 * 184.18540 * 5 4 3 32 32 H 1.09005 * 109.47032 * 304.18260 * 5 4 3 33 33 H 1.08997 * 109.47564 * 64.18284 * 5 4 3 34 34 H 1.07993 * 118.90436 * 179.97438 * 12 11 10 35 35 H 1.07995 * 119.76928 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.81318 * 180.28628 * 14 13 12 37 37 H 0.96997 * 120.00032 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.47139 * 25.92655 * 25 24 6 39 39 H 1.09009 * 109.46993 * 145.92085 * 25 24 6 40 40 H 1.08004 * 120.00027 * 304.99975 * 26 25 24 41 41 H 1.08008 * 120.00327 * 180.02562 * 27 26 25 42 42 H 1.07998 * 120.00059 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1359 -0.4991 -1.2916 5 6 2.7860 0.4233 -2.3800 6 6 4.4959 -0.7226 -1.2513 7 7 5.4243 0.1623 -0.9446 8 7 6.5875 -0.3815 -0.9990 9 6 6.4738 -1.6461 -1.3538 10 6 7.5718 -2.6056 -1.5310 11 7 7.3156 -3.8616 -1.8885 12 6 8.2785 -4.7412 -2.0547 13 6 9.6162 -4.4177 -1.8694 14 6 9.9787 -3.1503 -1.5075 15 6 8.9608 -2.1892 -1.3172 16 6 9.2714 -0.8705 -0.9391 17 1 8.5823 -0.3077 -0.3268 18 6 10.4739 -0.2875 -1.3563 19 7 11.2302 -0.9016 -2.2295 20 14 10.9985 1.3672 -0.6662 21 1 10.5652 2.4477 -1.5881 22 1 10.3709 1.5702 0.6642 23 1 12.4766 1.3991 -0.5264 24 7 5.1292 -1.8988 -1.5212 25 6 4.5094 -3.1686 -1.9082 26 6 4.2878 -4.0142 -0.6808 27 6 3.0913 -4.4728 -0.4086 28 1 -1.0499 -0.0002 -0.0001 29 1 3.0096 -0.6436 0.8004 30 1 3.0089 1.0163 0.1578 31 1 3.0946 -0.0058 -3.3333 32 1 1.7081 0.5854 -2.3865 33 1 3.2955 1.3748 -2.2279 34 1 8.0206 -5.7489 -2.3450 35 1 10.3755 -5.1713 -2.0170 36 1 11.0176 -2.8911 -1.3663 37 1 12.0632 -0.4975 -2.5188 38 1 3.5526 -2.9731 -2.3924 39 1 5.1654 -3.6971 -2.6000 40 1 5.1154 -4.2421 -0.0254 41 1 2.9324 -5.0786 0.4714 42 1 2.2636 -4.2446 -1.0637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001356177002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:15 Heat of formation + Delta-G solvation = 204.769478 kcal Electronic energy + Delta-G solvation = -26878.363507 eV Core-core repulsion = 23248.617055 eV Total energy + Delta-G solvation = -3629.746452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.02648 -38.19670 -37.53068 -35.61948 -34.23125 -33.06177 -32.27828 -31.04285 -30.67694 -28.23413 -27.85002 -26.48731 -25.74762 -24.68549 -22.73489 -21.66747 -20.43833 -20.12441 -19.41913 -18.20167 -17.48233 -17.04433 -15.97082 -15.86869 -15.62191 -15.29675 -14.87491 -14.54967 -14.34855 -14.10843 -13.84897 -13.28759 -13.14944 -12.84032 -12.64802 -12.38627 -12.14900 -12.01171 -11.87108 -11.53217 -11.46623 -11.21839 -11.12665 -10.99879 -10.70533 -10.55273 -10.30342 -10.01145 -9.73714 -9.49962 -9.47223 -9.31078 -8.94838 -8.59159 -8.38229 -8.12238 -7.27435 -6.99687 -4.59290 1.82957 2.22367 2.50647 2.63030 2.77043 2.90159 3.01839 3.10203 3.16011 3.20849 3.79303 3.83595 4.11466 4.36569 4.52544 5.03867 5.05525 5.17753 5.20706 5.33455 5.47707 5.50646 5.56227 5.56656 5.79904 5.83233 5.85141 5.94169 6.04686 6.09488 6.16020 6.35194 6.59329 6.64753 6.69459 6.72660 6.75700 6.91154 6.94236 7.00666 7.24214 7.51259 7.60483 7.64129 7.80945 7.86705 8.41375 8.50350 8.58783 9.31715 9.54767 9.87268 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.004554 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.467604 B = 6146.608758 C = 7910.144616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.176 3.824 4 N -0.458 5.458 5 C 0.035 3.965 6 C 0.298 3.702 7 N -0.313 5.313 8 N -0.277 5.277 9 C 0.302 3.698 10 C 0.006 3.994 11 N -0.444 5.444 12 C -0.035 4.035 13 C -0.140 4.140 14 C -0.123 4.123 15 C 0.101 3.899 16 C -0.389 4.389 17 H 0.117 0.883 18 C 0.068 3.932 19 N -0.779 5.779 20 Si 0.923 3.077 21 H -0.265 1.265 22 H -0.254 1.254 23 H -0.276 1.276 24 N -0.456 5.456 25 C 0.149 3.851 26 C -0.144 4.144 27 C -0.185 4.185 28 H 0.217 0.783 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.129 0.871 37 H 0.287 0.713 38 H 0.087 0.913 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.097 0.903 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.995 -1.450 1.256 12.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.172 4.172 3 C 0.050 3.950 4 N -0.182 5.182 5 C -0.112 4.112 6 C -0.057 4.057 7 N -0.159 5.159 8 N -0.120 5.120 9 C 0.041 3.959 10 C -0.133 4.133 11 N -0.153 5.153 12 C -0.199 4.199 13 C -0.161 4.161 14 C -0.149 4.149 15 C 0.094 3.906 16 C -0.417 4.417 17 H 0.135 0.865 18 C -0.153 4.153 19 N -0.402 5.402 20 Si 0.747 3.253 21 H -0.190 1.190 22 H -0.177 1.177 23 H -0.201 1.201 24 N -0.148 5.148 25 C 0.027 3.973 26 C -0.163 4.163 27 C -0.223 4.223 28 H 0.234 0.766 29 H 0.116 0.884 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.147 0.853 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.115 0.885 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.264 -0.761 1.277 12.354 hybrid contribution 0.767 0.186 -0.068 0.793 sum -11.497 -0.575 1.209 11.575 Atomic orbital electron populations 1.24814 0.95723 1.01734 0.99613 1.22761 0.93911 0.99736 1.00752 1.18954 0.84574 1.00958 0.90564 1.58147 1.06586 1.48217 1.05261 1.22444 1.01284 0.94475 0.93046 1.21710 0.90372 0.85135 1.08468 1.74689 0.96016 1.25675 1.19499 1.74845 1.13271 1.03658 1.20195 1.22373 0.80612 0.93279 0.99609 1.18878 0.88348 0.89555 1.16559 1.66825 1.37345 1.01672 1.09430 1.21407 0.88871 0.97628 1.12003 1.21349 0.96632 0.97084 1.00992 1.21406 0.99881 0.91369 1.02244 1.19152 0.89123 0.93891 0.88471 1.20247 1.01194 0.97238 1.23039 0.86516 1.26227 0.95055 1.00744 0.93248 1.69776 1.10889 1.38176 1.21349 0.86010 0.77780 0.80461 0.81068 1.18990 1.17700 1.20066 1.46182 1.06783 1.09761 1.52077 1.20883 0.98930 0.81144 0.96385 1.23057 0.98063 0.97369 0.97840 1.23758 0.96317 1.01190 1.01000 0.76576 0.88401 0.90471 0.91183 0.90534 0.93509 0.86046 0.88191 0.85348 0.90156 0.89488 0.86521 0.86929 0.88492 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.03 19.25 29.55 0.57 -1.46 16 2 C -0.17 -2.10 12.38 -37.12 -0.46 -2.56 16 3 C 0.18 2.43 5.32 -6.61 -0.04 2.39 16 4 N -0.46 -7.01 4.70 -185.83 -0.87 -7.89 16 5 C 0.04 0.47 9.33 60.06 0.56 1.03 16 6 C 0.30 5.69 6.40 -319.28 -2.04 3.65 16 7 N -0.31 -6.88 12.15 30.25 0.37 -6.51 16 8 N -0.28 -6.79 9.30 32.51 0.30 -6.48 16 9 C 0.30 7.10 7.75 -153.47 -1.19 5.91 16 10 C 0.01 0.13 6.96 -80.46 -0.56 -0.43 16 11 N -0.44 -9.92 7.98 -8.14 -0.06 -9.98 16 12 C -0.03 -0.73 11.11 -17.47 -0.19 -0.92 16 13 C -0.14 -2.97 9.98 -39.90 -0.40 -3.37 16 14 C -0.12 -2.94 8.71 -38.98 -0.34 -3.28 16 15 C 0.10 2.58 5.69 -104.47 -0.59 1.98 16 16 C -0.39 -9.96 8.07 -38.01 -0.31 -10.27 16 17 H 0.12 3.07 5.84 -52.48 -0.31 2.76 16 18 C 0.07 1.62 5.30 -17.32 -0.09 1.53 16 19 N -0.78 -18.70 10.97 55.55 0.61 -18.09 16 20 Si 0.92 18.50 29.57 -169.99 -5.03 13.48 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.25 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 24 N -0.46 -9.08 2.82 -116.17 -0.33 -9.41 16 25 C 0.15 2.49 5.95 -5.20 -0.03 2.46 16 26 C -0.14 -2.24 9.85 -36.03 -0.35 -2.59 16 27 C -0.18 -2.35 14.32 29.02 0.42 -1.93 16 28 H 0.22 1.36 7.80 -54.10 -0.42 0.94 16 29 H 0.10 1.40 8.05 -51.93 -0.42 0.99 16 30 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 0.86 7.16 -51.93 -0.37 0.49 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.13 3.09 6.48 -52.49 -0.34 2.75 16 37 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 38 H 0.09 1.28 7.77 -51.93 -0.40 0.88 16 39 H 0.12 2.08 6.54 -51.92 -0.34 1.74 16 40 H 0.11 1.97 8.06 -52.48 -0.42 1.55 16 41 H 0.10 1.10 8.06 -52.48 -0.42 0.67 16 42 H 0.10 1.11 7.84 -52.49 -0.41 0.70 16 LS Contribution 367.58 15.07 5.54 5.54 Total: -1.00 -28.20 367.58 -9.63 -37.83 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -5.11 Total: 9.37 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -5.05 Total: -7.84 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.01 Total: -58.37 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.20 -9.63 -37.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356177002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.602 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 214.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 204.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds