Wall clock time and date at job start Tue Mar 31 2020 13:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46903 * 109.46791 * 68.83833 * 3 2 1 5 5 C 1.46899 * 111.00171 * 66.04800 * 4 3 2 6 6 C 1.37891 * 110.99493 * 189.99751 * 4 3 2 7 7 N 1.31867 * 126.33029 * 303.06416 * 6 4 3 8 8 N 1.28530 * 110.08106 * 179.72521 * 7 6 4 9 9 C 1.31829 * 109.82924 * 0.45792 * 8 7 6 10 10 C 1.46888 * 126.48299 * 179.81923 * 9 8 7 11 11 N 1.33080 * 120.33099 * 179.71317 * 10 9 8 12 12 C 1.31474 * 121.62554 * 179.97438 * 11 10 9 13 13 C 1.38864 * 122.19410 * 359.97438 * 12 11 10 14 14 C 1.36704 * 120.45066 * 359.72089 * 13 12 11 15 15 C 1.41277 * 118.37753 * 0.54596 * 14 13 12 16 16 C 1.40653 * 120.99014 * 179.73189 * 15 14 13 17 17 H 1.08009 * 120.00435 * 211.48715 * 16 15 14 18 18 C 1.39995 * 119.99958 * 31.48371 * 16 15 14 19 19 N 1.30825 * 119.99997 * 8.47918 * 18 16 15 20 20 Si 1.86806 * 120.00241 * 188.47906 * 18 16 15 21 21 H 1.48494 * 109.46832 * 265.03320 * 20 18 16 22 22 H 1.48499 * 109.46846 * 25.03311 * 20 18 16 23 23 H 1.48498 * 109.47093 * 145.03414 * 20 18 16 24 24 N 1.36289 * 126.32657 * 123.06796 * 6 4 3 25 25 C 1.46504 * 127.13846 * 359.97438 * 24 6 4 26 26 C 1.50691 * 109.47311 * 265.92530 * 25 24 6 27 27 C 1.30994 * 120.00301 * 125.00119 * 26 25 24 28 28 H 4.40879 * 5.52229 * 179.97438 * 4 1 2 29 29 H 1.08992 * 109.47052 * 308.83755 * 3 2 1 30 30 H 1.09003 * 109.47030 * 188.83305 * 3 2 1 31 31 H 1.09004 * 109.47074 * 184.18540 * 5 4 3 32 32 H 1.09005 * 109.47032 * 304.18260 * 5 4 3 33 33 H 1.08997 * 109.47564 * 64.18284 * 5 4 3 34 34 H 1.07993 * 118.90436 * 179.97438 * 12 11 10 35 35 H 1.07995 * 119.76928 * 180.02562 * 13 12 11 36 36 H 1.07999 * 120.81318 * 180.28628 * 14 13 12 37 37 H 0.96997 * 120.00032 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.47139 * 25.92655 * 25 24 6 39 39 H 1.09009 * 109.46993 * 145.92085 * 25 24 6 40 40 H 1.08004 * 120.00027 * 304.99975 * 26 25 24 41 41 H 1.08008 * 120.00327 * 180.02562 * 27 26 25 42 42 H 1.07998 * 120.00059 * 359.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1359 -0.4991 -1.2916 5 6 2.7860 0.4233 -2.3800 6 6 4.4959 -0.7226 -1.2513 7 7 5.4243 0.1623 -0.9446 8 7 6.5875 -0.3815 -0.9990 9 6 6.4738 -1.6461 -1.3538 10 6 7.5718 -2.6056 -1.5310 11 7 7.3156 -3.8616 -1.8885 12 6 8.2785 -4.7412 -2.0547 13 6 9.6162 -4.4177 -1.8694 14 6 9.9787 -3.1503 -1.5075 15 6 8.9608 -2.1892 -1.3172 16 6 9.2714 -0.8705 -0.9391 17 1 8.5823 -0.3077 -0.3268 18 6 10.4739 -0.2875 -1.3563 19 7 11.2302 -0.9016 -2.2295 20 14 10.9985 1.3672 -0.6662 21 1 10.5652 2.4477 -1.5881 22 1 10.3709 1.5702 0.6642 23 1 12.4766 1.3991 -0.5264 24 7 5.1292 -1.8988 -1.5212 25 6 4.5094 -3.1686 -1.9082 26 6 4.2878 -4.0142 -0.6808 27 6 3.0913 -4.4728 -0.4086 28 1 -1.0499 -0.0002 -0.0001 29 1 3.0096 -0.6436 0.8004 30 1 3.0089 1.0163 0.1578 31 1 3.0946 -0.0058 -3.3333 32 1 1.7081 0.5854 -2.3865 33 1 3.2955 1.3748 -2.2279 34 1 8.0206 -5.7489 -2.3450 35 1 10.3755 -5.1713 -2.0170 36 1 11.0176 -2.8911 -1.3663 37 1 12.0632 -0.4975 -2.5188 38 1 3.5526 -2.9731 -2.3924 39 1 5.1654 -3.6971 -2.6000 40 1 5.1154 -4.2421 -0.0254 41 1 2.9324 -5.0786 0.4714 42 1 2.2636 -4.2446 -1.0637 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001356177002.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:14 Heat of formation + Delta-G solvation = 191.976515 kcal Electronic energy + Delta-G solvation = -26878.918252 eV Core-core repulsion = 23248.617055 eV Total energy + Delta-G solvation = -3630.301196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.144 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -43.64869 -39.92134 -38.81036 -37.01413 -35.99959 -34.04721 -33.68534 -32.68374 -32.45076 -29.86113 -28.91153 -27.91635 -27.46860 -25.95936 -24.45971 -23.41224 -21.97516 -21.60524 -20.75692 -19.28805 -19.09854 -18.46645 -17.55124 -17.38451 -17.07656 -16.88088 -16.11481 -16.03280 -15.75840 -15.61289 -15.33913 -14.57641 -14.44272 -14.24601 -14.11877 -13.85834 -13.67821 -13.57956 -13.25893 -13.08819 -12.99012 -12.79282 -12.66562 -12.41240 -12.15462 -11.76251 -11.60226 -11.41835 -11.25384 -11.12784 -11.01115 -10.64504 -10.47249 -10.15160 -10.00579 -9.81556 -9.04616 -8.75856 -6.45285 0.12696 0.90247 0.96406 1.23445 1.36474 1.46245 1.48849 1.52184 1.91401 1.99019 2.06202 2.18351 2.72562 2.91121 3.42220 3.45827 3.65694 3.76799 3.95583 3.96792 4.12621 4.22843 4.30515 4.48363 4.50291 4.52103 4.61982 4.63944 4.73012 4.80373 4.86885 4.94190 4.95665 5.08199 5.17468 5.19143 5.25215 5.51939 5.58077 5.63379 5.76943 5.82603 5.88672 6.06649 6.30661 6.56680 6.64730 6.68591 6.77367 7.54618 7.86328 8.13668 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012868 B = 0.004554 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.467604 B = 6146.608758 C = 7910.144616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.222 4.222 3 C 0.181 3.819 4 N -0.452 5.452 5 C 0.037 3.963 6 C 0.323 3.677 7 N -0.345 5.345 8 N -0.309 5.309 9 C 0.278 3.722 10 C -0.013 4.013 11 N -0.442 5.442 12 C -0.031 4.031 13 C -0.133 4.133 14 C -0.143 4.143 15 C 0.074 3.926 16 C -0.423 4.423 17 H 0.099 0.901 18 C 0.037 3.963 19 N -0.803 5.803 20 Si 0.982 3.018 21 H -0.269 1.269 22 H -0.262 1.262 23 H -0.254 1.254 24 N -0.453 5.453 25 C 0.151 3.849 26 C -0.176 4.176 27 C -0.146 4.146 28 H 0.256 0.744 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.296 0.704 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.854 -2.569 0.968 15.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.223 4.223 3 C 0.056 3.944 4 N -0.177 5.177 5 C -0.110 4.110 6 C -0.033 4.033 7 N -0.190 5.190 8 N -0.151 5.151 9 C 0.016 3.984 10 C -0.151 4.151 11 N -0.151 5.151 12 C -0.196 4.196 13 C -0.154 4.154 14 C -0.169 4.169 15 C 0.067 3.933 16 C -0.451 4.451 17 H 0.117 0.883 18 C -0.181 4.181 19 N -0.428 5.428 20 Si 0.802 3.198 21 H -0.194 1.194 22 H -0.186 1.186 23 H -0.177 1.177 24 N -0.144 5.144 25 C 0.030 3.970 26 C -0.195 4.195 27 C -0.183 4.183 28 H 0.273 0.727 29 H 0.103 0.897 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.124 0.876 33 H 0.055 0.945 34 H 0.178 0.822 35 H 0.154 0.846 36 H 0.138 0.862 37 H 0.108 0.892 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.134 0.866 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -15.133 -1.898 0.984 15.283 hybrid contribution 1.357 0.368 0.007 1.406 sum -13.776 -1.529 0.992 13.896 Atomic orbital electron populations 1.25697 0.96327 0.98690 0.96511 1.22512 0.93684 1.02499 1.03565 1.18757 0.86335 1.00125 0.89225 1.58447 1.03613 1.48990 1.06698 1.22504 1.02927 0.93420 0.92148 1.22131 0.91601 0.84347 1.05234 1.74612 0.96046 1.26752 1.21598 1.74754 1.14757 1.04623 1.20943 1.22311 0.82016 0.93139 1.00980 1.19108 0.88505 0.90502 1.16947 1.66937 1.37699 1.01068 1.09378 1.22143 0.88653 0.98874 1.09933 1.21719 0.97820 0.96746 0.99068 1.21440 0.99296 0.92426 1.03781 1.19500 0.90216 0.94504 0.89053 1.20221 1.02282 0.97811 1.24780 0.88333 1.26836 0.94566 1.03471 0.93193 1.69776 1.11487 1.39537 1.21961 0.85176 0.78403 0.76506 0.79670 1.19386 1.18575 1.17739 1.46389 1.05767 1.10990 1.51262 1.21038 0.99179 0.79842 0.96958 1.22761 0.98605 1.00092 0.98082 1.24028 0.95340 0.98187 1.00758 0.72735 0.89709 0.91213 0.91243 0.87637 0.94538 0.82202 0.84607 0.86150 0.89249 0.87169 0.87953 0.89649 0.86632 0.86492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 19.25 74.32 1.43 -1.04 16 2 C -0.22 -4.90 12.38 31.13 0.39 -4.51 16 3 C 0.18 4.94 5.32 84.50 0.45 5.38 16 4 N -0.45 -13.52 4.70 -741.83 -3.49 -17.01 16 5 C 0.04 0.94 9.33 127.69 1.19 2.13 16 6 C 0.32 12.58 6.40 260.25 1.66 14.24 16 7 N -0.34 -15.88 12.15 -58.19 -0.71 -16.59 16 8 N -0.31 -16.04 9.30 -51.07 -0.47 -16.51 16 9 C 0.28 13.74 7.75 135.68 1.05 14.80 16 10 C -0.01 -0.65 6.96 43.40 0.30 -0.34 16 11 N -0.44 -19.94 7.98 -179.68 -1.43 -21.37 16 12 C -0.03 -1.28 11.11 84.90 0.94 -0.34 16 13 C -0.13 -5.55 9.98 22.06 0.22 -5.33 16 14 C -0.14 -7.04 8.71 22.66 0.20 -6.84 16 15 C 0.07 3.99 5.69 -19.77 -0.11 3.88 16 16 C -0.42 -22.99 8.07 23.29 0.19 -22.80 16 17 H 0.10 5.60 5.84 -2.91 -0.02 5.59 16 18 C 0.04 1.86 5.30 85.27 0.45 2.31 16 19 N -0.80 -39.87 10.97 21.84 0.24 -39.63 16 20 Si 0.98 39.41 29.57 68.60 2.03 41.44 16 21 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 22 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 23 H -0.25 -9.17 7.11 99.48 0.71 -8.46 16 24 N -0.45 -18.46 2.82 -521.44 -1.47 -19.92 16 25 C 0.15 4.97 5.95 85.63 0.51 5.48 16 26 C -0.18 -5.32 9.85 25.65 0.25 -5.07 16 27 C -0.15 -3.27 14.32 67.79 0.97 -2.30 16 28 H 0.26 1.71 7.80 -4.42 -0.03 1.67 16 29 H 0.08 2.47 8.05 -2.39 -0.02 2.45 16 30 H 0.07 1.97 8.12 -2.39 -0.02 1.95 16 31 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.11 2.09 7.16 -2.38 -0.02 2.07 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.16 5.23 8.06 -2.91 -0.02 5.21 16 35 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.12 6.01 6.48 -2.91 -0.02 5.99 16 37 H 0.30 13.14 8.30 -92.71 -0.77 12.37 16 38 H 0.11 3.04 7.77 -2.39 -0.02 3.02 16 39 H 0.10 3.65 6.54 -2.38 -0.02 3.63 16 40 H 0.09 3.05 8.06 -2.91 -0.02 3.03 16 41 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 42 H 0.12 2.19 7.84 -2.91 -0.02 2.16 16 Total: -1.00 -65.71 367.58 5.83 -59.88 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 1.04 Total: 30.06 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 10.10 Total: -0.34 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -7.33 Total: -131.04 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.44 kcal Total: -65.71 5.83 -59.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001356177002.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.857 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 191.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds