Wall clock time and date at job start Tue Mar 31 2020 14:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76416 * 0.03601 * 9 2 1 11 11 C 1.50704 * 109.47133 * 269.98584 * 10 9 2 12 12 O 1.21279 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99848 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99652 * 179.97438 * 13 11 10 15 15 C 1.50698 * 109.46775 * 90.00245 * 14 13 11 16 16 H 1.08008 * 120.00587 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31505 * 120.00293 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99623 * 359.97438 * 17 15 14 20 20 H 1.48510 * 109.46734 * 90.00380 * 19 17 15 21 21 H 1.48500 * 109.47232 * 210.00088 * 19 17 15 22 22 H 1.48494 * 109.47318 * 330.00865 * 19 17 15 23 23 C 1.46494 * 120.00473 * 359.97438 * 13 11 10 24 24 C 1.53002 * 109.47355 * 89.99897 * 23 13 11 25 25 C 1.53000 * 109.46920 * 65.00141 * 24 23 13 26 26 C 1.52999 * 109.47174 * 185.00355 * 24 23 13 27 27 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 28 28 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 29 29 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 30 30 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 31 31 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 32 32 H 1.09007 * 109.47259 * 29.97714 * 10 9 2 33 33 H 1.08994 * 109.47173 * 149.98136 * 10 9 2 34 34 H 1.08998 * 109.47045 * 209.99519 * 14 13 11 35 35 H 1.08994 * 109.47033 * 330.00209 * 14 13 11 36 36 H 0.97005 * 120.00582 * 179.97438 * 18 17 15 37 37 H 1.08999 * 109.47634 * 210.00084 * 23 13 11 38 38 H 1.09004 * 109.47093 * 330.00168 * 23 13 11 39 39 H 1.09000 * 109.46973 * 305.00791 * 24 23 13 40 40 H 1.09002 * 109.47134 * 300.00589 * 25 24 23 41 41 H 1.09001 * 109.46968 * 60.00021 * 25 24 23 42 42 H 1.09000 * 109.47049 * 179.97438 * 25 24 23 43 43 H 1.08993 * 109.46953 * 60.00491 * 26 24 23 44 44 H 1.09010 * 109.46637 * 180.02562 * 26 24 23 45 45 H 1.09002 * 109.46959 * 299.99610 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0003 11 6 1.2356 -2.9520 1.4211 12 8 1.6161 -2.2619 2.3430 13 7 0.5965 -4.1127 1.6671 14 6 0.3608 -4.5407 3.0483 15 6 -0.9646 -4.0021 3.5218 16 1 -1.5707 -3.4008 2.8603 17 6 -1.4032 -4.2760 4.8000 18 7 -2.5596 -3.8056 5.2133 19 14 -0.3547 -5.3154 5.9445 20 1 0.5602 -4.4344 6.7142 21 1 -1.2336 -6.0576 6.8835 22 1 0.4430 -6.2800 5.1456 23 6 0.1373 -4.9465 0.5536 24 6 1.2411 -5.9326 0.1658 25 6 1.4878 -6.9027 1.3229 26 6 0.8109 -6.7176 -1.0750 27 1 -0.3632 0.0003 1.0278 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 4.3371 2.6891 0.8845 31 1 4.5361 -2.6225 -0.8818 32 1 0.5237 -2.4007 -0.5137 33 1 2.0827 -3.2597 -0.5134 34 1 0.3477 -5.6296 3.0941 35 1 1.1571 -4.1596 3.6876 36 1 -2.8684 -3.9986 6.1124 37 1 -0.7530 -5.4981 0.8556 38 1 -0.1003 -4.3129 -0.3009 39 1 2.1581 -5.3847 -0.0507 40 1 1.7942 -6.3435 2.2069 41 1 0.5707 -7.4506 1.5395 42 1 2.2738 -7.6055 1.0466 43 1 0.6352 -6.0265 -1.8993 44 1 1.5971 -7.4204 -1.3509 45 1 -0.1062 -7.2655 -0.8584 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362081018.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:36 Heat of formation + Delta-G solvation = -101.808891 kcal Electronic energy + Delta-G solvation = -28627.680723 eV Core-core repulsion = 24645.038365 eV Total energy + Delta-G solvation = -3982.642358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60382 -40.80789 -39.27329 -38.17252 -37.74593 -35.46163 -35.15664 -34.15787 -33.78442 -30.98690 -29.97109 -28.19867 -27.90154 -26.80463 -24.97095 -24.07109 -23.44430 -21.38011 -20.42776 -19.88262 -19.69418 -19.13386 -19.06144 -17.92622 -17.43658 -16.88251 -16.49773 -16.37155 -15.98383 -15.58043 -15.28714 -14.99133 -14.88559 -14.68258 -14.48530 -14.21848 -13.81216 -13.74528 -13.56483 -13.52176 -13.45283 -13.13987 -12.97301 -12.84262 -12.68202 -12.56876 -12.44994 -12.11779 -11.94989 -11.94232 -11.73731 -11.52145 -11.50464 -11.46461 -10.82687 -10.79964 -10.42688 -10.12917 -9.31677 -8.32627 -6.35189 -0.43640 -0.19958 1.29951 1.33979 1.41225 1.76495 1.84487 2.18029 2.29969 2.44425 2.58573 3.02515 3.17180 3.49100 3.68394 3.77392 3.93174 4.01762 4.09924 4.19073 4.30979 4.36963 4.51410 4.66533 4.70982 4.75955 4.79132 4.83387 4.84146 4.95026 4.96488 5.02325 5.13926 5.18814 5.22891 5.35406 5.48721 5.49250 5.58534 5.65222 5.73956 6.26964 6.41592 6.48032 6.66340 6.75877 6.81228 7.25073 7.47185 8.83881 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011746 B = 0.004397 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.256300 B = 6366.391736 C = 7566.013490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.213 3.787 3 N -0.547 5.547 4 C 0.508 3.492 5 O -0.461 6.461 6 N -0.573 5.573 7 C 0.394 3.606 8 O -0.472 6.472 9 C -0.195 4.195 10 C -0.077 4.077 11 C 0.506 3.494 12 O -0.596 6.596 13 N -0.591 5.591 14 C 0.226 3.774 15 C -0.528 4.528 16 H 0.037 0.963 17 C 0.015 3.985 18 N -0.943 5.943 19 Si 0.934 3.066 20 H -0.282 1.282 21 H -0.275 1.275 22 H -0.239 1.239 23 C 0.105 3.895 24 C -0.107 4.107 25 C -0.154 4.154 26 C -0.138 4.138 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.111 0.889 30 H 0.430 0.570 31 H 0.430 0.570 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.053 0.947 35 H 0.007 0.993 36 H 0.266 0.734 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.051 0.949 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.813 -1.915 -18.739 21.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.069 3.931 3 N -0.275 5.275 4 C 0.203 3.797 5 O -0.268 6.268 6 N -0.311 5.311 7 C 0.207 3.793 8 O -0.283 6.283 9 C -0.201 4.201 10 C -0.117 4.117 11 C 0.295 3.705 12 O -0.477 6.477 13 N -0.321 5.321 14 C 0.104 3.896 15 C -0.566 4.566 16 H 0.055 0.945 17 C -0.183 4.183 18 N -0.584 5.584 19 Si 0.758 3.242 20 H -0.209 1.209 21 H -0.200 1.200 22 H -0.162 1.162 23 C -0.017 4.017 24 C -0.127 4.127 25 C -0.211 4.211 26 C -0.195 4.195 27 H 0.092 0.908 28 H 0.120 0.880 29 H 0.129 0.871 30 H 0.293 0.707 31 H 0.294 0.706 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.071 0.929 35 H 0.025 0.975 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.372 -0.705 -18.113 20.885 hybrid contribution -0.029 -0.675 1.557 1.697 sum 10.343 -1.380 -16.557 19.571 Atomic orbital electron populations 1.20988 0.85626 1.06179 1.03950 1.21708 0.98561 0.85954 0.86871 1.67890 1.09055 1.31734 1.18790 1.19985 0.83920 0.85063 0.90720 1.84635 1.75893 1.30006 1.36220 1.67399 1.44284 0.99141 1.20271 1.19020 0.86599 0.84845 0.88814 1.84770 1.73501 1.33908 1.36107 1.21161 0.93924 0.97824 1.07230 1.20583 1.03811 0.93588 0.93706 1.20975 0.77261 0.80523 0.91698 1.90669 1.53560 1.54909 1.48521 1.47898 1.55645 1.20938 1.07632 1.19357 0.94068 0.95698 0.80524 1.21595 1.03778 1.32294 0.98970 0.94462 1.25709 0.96029 0.97100 0.99472 1.70025 1.21832 1.47344 1.19169 0.85913 0.79083 0.79740 0.79454 1.20859 1.20019 1.16210 1.21979 0.97480 0.93603 0.88668 1.21555 0.98657 0.96303 0.96143 1.21964 1.01703 0.99233 0.98234 1.21742 1.01666 1.00219 0.95913 0.90836 0.87967 0.87084 0.70684 0.70616 0.84381 0.84112 0.92932 0.97530 0.92452 0.91065 0.87630 0.90199 0.94905 0.93037 0.91424 0.90544 0.91601 0.92774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.60 9.83 71.24 0.70 -1.90 16 2 C 0.21 6.06 6.82 42.45 0.29 6.35 16 3 N -0.55 -16.70 10.40 -301.71 -3.14 -19.84 16 4 C 0.51 15.15 8.71 180.58 1.57 16.72 16 5 O -0.46 -11.18 13.64 -87.58 -1.19 -12.37 16 6 N -0.57 -17.52 10.49 -426.36 -4.47 -21.99 16 7 C 0.39 11.01 7.81 84.84 0.66 11.67 16 8 O -0.47 -10.57 12.74 -88.14 -1.12 -11.69 16 9 C -0.20 -5.30 4.42 -19.59 -0.09 -5.38 16 10 C -0.08 -1.75 3.84 29.10 0.11 -1.64 16 11 C 0.51 18.62 7.67 87.66 0.67 19.30 16 12 O -0.60 -29.11 15.61 -3.03 -0.05 -29.16 16 13 N -0.59 -21.66 2.28 -826.16 -1.88 -23.55 16 14 C 0.23 10.60 3.30 85.63 0.28 10.88 16 15 C -0.53 -29.98 9.94 25.60 0.25 -29.72 16 16 H 0.04 2.33 8.06 -2.91 -0.02 2.30 16 17 C 0.01 0.87 5.47 84.66 0.46 1.33 16 18 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 19 Si 0.93 44.43 27.47 68.60 1.88 46.31 16 20 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 23 C 0.10 2.63 4.70 86.38 0.41 3.03 16 24 C -0.11 -2.07 3.12 -10.79 -0.03 -2.10 16 25 C -0.15 -3.70 8.18 71.98 0.59 -3.11 16 26 C -0.14 -1.78 9.19 71.98 0.66 -1.11 16 27 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.11 1.94 6.06 -2.39 -0.01 1.92 16 30 H 0.43 6.26 9.06 -74.06 -0.67 5.59 16 31 H 0.43 3.79 9.06 -74.06 -0.67 3.12 16 32 H 0.14 2.27 5.33 -2.38 -0.01 2.26 16 33 H 0.14 2.11 6.74 -2.39 -0.02 2.09 16 34 H 0.05 2.30 5.04 -2.39 -0.01 2.29 16 35 H 0.01 0.35 6.85 -2.39 -0.02 0.33 16 36 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 37 H 0.07 2.02 8.07 -2.39 -0.02 2.00 16 38 H 0.11 1.84 6.44 -2.38 -0.02 1.83 16 39 H 0.08 1.39 7.30 -2.39 -0.02 1.38 16 40 H 0.03 0.99 5.89 -2.39 -0.01 0.97 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -87.75 369.54 -3.47 -91.23 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.35 Total: 15.22 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 6.55 Total: 24.31 kcal Atomic # 7 Polarization: -114.64 SS G_CDS: -9.19 Total: -123.84 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -2.36 Total: -53.23 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -87.75 -3.47 -91.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362081018.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.583 kcal (2) G-P(sol) polarization free energy of solvation -87.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds