Wall clock time and date at job start Tue Mar 31 2020 14:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76416 * 0.03601 * 9 2 1 11 11 C 1.50704 * 109.47133 * 269.98584 * 10 9 2 12 12 O 1.21279 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99848 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99652 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47002 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47094 * 300.00396 * 15 14 13 17 17 C 1.53003 * 109.47113 * 60.00166 * 15 14 13 18 18 C 1.53003 * 109.47405 * 180.02562 * 15 14 13 19 19 C 1.50696 * 109.47181 * 179.97438 * 18 15 14 20 20 H 1.08001 * 120.00193 * 0.02562 * 19 18 15 21 21 C 1.37882 * 119.99870 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99550 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99929 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47186 * 90.00286 * 23 21 19 25 25 H 1.48502 * 109.47310 * 210.00142 * 23 21 19 26 26 H 1.48501 * 109.47499 * 330.00433 * 23 21 19 27 27 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 28 28 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 29 29 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 30 30 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 31 31 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 32 32 H 1.09007 * 109.47259 * 29.97714 * 10 9 2 33 33 H 1.08994 * 109.47173 * 149.98136 * 10 9 2 34 34 H 0.96998 * 120.00197 * 359.97438 * 13 11 10 35 35 H 1.08993 * 109.47110 * 299.99966 * 14 13 11 36 36 H 1.09001 * 109.46718 * 60.00645 * 14 13 11 37 37 H 1.09001 * 109.47247 * 60.00294 * 16 15 14 38 38 H 1.09011 * 109.46719 * 179.97438 * 16 15 14 39 39 H 1.08994 * 109.47133 * 299.99828 * 16 15 14 40 40 H 1.09002 * 109.46784 * 60.00248 * 17 15 14 41 41 H 1.08997 * 109.47510 * 180.02562 * 17 15 14 42 42 H 1.08999 * 109.46762 * 299.99915 * 17 15 14 43 43 H 1.08993 * 109.46696 * 300.00248 * 18 15 14 44 44 H 1.09000 * 109.46590 * 60.00146 * 18 15 14 45 45 H 0.96999 * 119.99223 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0003 11 6 1.2356 -2.9520 1.4211 12 8 1.6161 -2.2619 2.3430 13 7 0.5965 -4.1127 1.6671 14 6 0.3608 -4.5407 3.0483 15 6 -0.3777 -5.8806 3.0481 16 6 -1.7180 -5.7241 2.3269 17 6 0.4701 -6.9302 2.3266 18 6 -0.6244 -6.3273 4.4906 19 6 -1.3524 -7.6467 4.4903 20 1 -1.6128 -8.1197 3.5549 21 6 -1.6853 -8.2507 5.6843 22 7 -1.3678 -7.6749 6.8233 23 14 -2.5870 -9.8866 5.6840 24 1 -1.5999 -10.9959 5.6839 25 1 -3.4391 -9.9824 6.8964 26 1 -3.4390 -9.9820 4.4714 27 1 -0.3632 0.0003 1.0278 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 4.3371 2.6891 0.8845 31 1 4.5361 -2.6225 -0.8818 32 1 0.5237 -2.4007 -0.5137 33 1 2.0827 -3.2597 -0.5134 34 1 0.2925 -4.6648 0.9298 35 1 1.3156 -4.6517 3.5622 36 1 -0.2437 -3.7932 3.5621 37 1 -1.5427 -5.4058 1.2992 38 1 -2.2440 -6.6789 2.3264 39 1 -2.3220 -4.9764 2.8408 40 1 1.4249 -7.0417 2.8405 41 1 -0.0562 -7.8847 2.3261 42 1 0.6454 -6.6117 1.2991 43 1 0.3302 -6.4386 5.0046 44 1 -1.2287 -5.5794 5.0041 45 1 -1.6023 -8.0997 7.6632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362521164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:34 Heat of formation + Delta-G solvation = -80.717373 kcal Electronic energy + Delta-G solvation = -27381.604664 eV Core-core repulsion = 23399.876902 eV Total energy + Delta-G solvation = -3981.727762 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.78691 -39.67817 -38.50671 -37.44697 -37.09132 -34.48328 -33.67168 -32.98546 -32.10029 -29.71702 -27.97065 -27.06966 -26.56673 -25.89981 -23.75256 -23.17383 -22.59559 -20.35461 -19.62668 -18.91228 -18.41272 -18.34739 -16.99993 -16.42134 -16.09011 -15.91657 -15.57875 -15.30431 -14.69043 -14.39262 -14.25376 -14.05936 -13.70761 -13.61419 -13.12635 -13.08339 -12.82643 -12.77121 -12.73007 -12.40595 -12.09760 -12.03518 -11.88771 -11.19748 -11.17659 -11.05407 -10.88867 -10.68215 -10.67468 -10.45325 -10.29630 -10.00958 -9.92644 -9.59319 -9.42916 -9.16798 -8.95987 -8.80560 -8.39139 -6.03107 -4.04639 0.36362 0.61321 2.54321 2.69854 2.96602 3.28377 3.30506 3.35710 3.36931 3.48572 3.90999 4.23333 4.39033 4.42234 4.57835 4.82821 4.91515 5.02287 5.11686 5.29022 5.32392 5.44148 5.47035 5.49084 5.57512 5.69268 5.85127 6.10697 6.16336 6.23422 6.33611 6.42567 6.49632 6.57824 6.69848 6.98206 7.01048 7.02680 7.07684 7.08591 7.59988 7.64835 7.65285 7.72215 7.95352 8.32382 8.37619 9.00203 9.58666 11.08349 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028982 B = 0.002315 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.873483 B =12092.588790 C =12225.263981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.223 3.777 3 N -0.529 5.529 4 C 0.518 3.482 5 O -0.458 6.458 6 N -0.552 5.552 7 C 0.398 3.602 8 O -0.465 6.465 9 C -0.192 4.192 10 C -0.092 4.092 11 C 0.512 3.488 12 O -0.538 6.538 13 N -0.719 5.719 14 C 0.129 3.871 15 C -0.072 4.072 16 C -0.127 4.127 17 C -0.127 4.127 18 C 0.035 3.965 19 C -0.511 4.511 20 H 0.059 0.941 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.889 3.111 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.414 0.586 31 H 0.407 0.593 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 13.025 -18.797 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.078 3.922 3 N -0.257 5.257 4 C 0.214 3.786 5 O -0.261 6.261 6 N -0.288 5.288 7 C 0.211 3.789 8 O -0.273 6.273 9 C -0.198 4.198 10 C -0.133 4.133 11 C 0.297 3.703 12 O -0.415 6.415 13 N -0.371 5.371 14 C 0.006 3.994 15 C -0.073 4.073 16 C -0.184 4.184 17 C -0.184 4.184 18 C -0.002 4.002 19 C -0.550 4.550 20 H 0.077 0.923 21 C -0.145 4.145 22 N -0.534 5.534 23 Si 0.717 3.283 24 H -0.208 1.208 25 H -0.213 1.213 26 H -0.199 1.199 27 H 0.113 0.887 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.273 0.727 31 H 0.266 0.734 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.234 0.766 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.036 0.964 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.341 14.389 -17.910 23.833 hybrid contribution -0.624 -1.927 -0.070 2.027 sum 5.716 12.462 -17.980 22.611 Atomic orbital electron populations 1.20926 0.87013 1.04318 1.04683 1.21265 0.97504 0.85859 0.87568 1.67851 1.08881 1.31042 1.17898 1.19795 0.83675 0.84548 0.90630 1.84693 1.76139 1.30732 1.34567 1.67377 1.43852 0.98631 1.18971 1.18848 0.86179 0.84638 0.89232 1.84817 1.73796 1.34731 1.33918 1.20951 0.93920 0.97118 1.07809 1.20472 1.02197 0.94025 0.96572 1.20233 0.78201 0.81495 0.90412 1.90728 1.50556 1.54140 1.46096 1.46167 1.58607 1.22064 1.10283 1.21639 1.00303 0.96747 0.80728 1.20905 0.94046 0.91679 1.00630 1.21764 0.97216 1.02442 0.96988 1.21763 0.99732 0.99918 0.97024 1.19094 0.97134 0.96322 0.87655 1.21169 1.36613 1.05085 0.92104 0.92252 1.25023 0.96165 0.97559 0.95787 1.69966 1.47220 1.38882 0.97282 0.86644 0.79780 0.84376 0.77478 1.20770 1.21337 1.19943 0.88661 0.89374 0.89560 0.72674 0.73360 0.87138 0.87440 0.76627 0.91820 0.91816 0.95243 0.91406 0.93360 0.93353 0.91422 0.95236 0.96362 0.96354 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 9.83 36.01 0.35 -0.51 16 2 C 0.22 2.43 6.82 -82.33 -0.56 1.87 16 3 N -0.53 -6.54 10.40 -11.01 -0.11 -6.66 16 4 C 0.52 6.48 8.71 -91.28 -0.80 5.69 16 5 O -0.46 -4.66 13.64 -18.07 -0.25 -4.90 16 6 N -0.55 -7.27 10.49 -14.79 -0.16 -7.43 16 7 C 0.40 4.72 7.81 -16.71 -0.13 4.59 16 8 O -0.47 -4.62 12.74 -18.23 -0.23 -4.85 16 9 C -0.19 -2.05 4.42 -104.20 -0.46 -2.51 16 10 C -0.09 -0.77 5.28 -29.03 -0.15 -0.92 16 11 C 0.51 6.71 7.82 -10.98 -0.09 6.62 16 12 O -0.54 -9.67 16.03 5.56 0.09 -9.58 16 13 N -0.72 -9.15 4.96 -60.29 -0.30 -9.44 16 14 C 0.13 2.14 4.57 -4.04 -0.02 2.12 16 15 C -0.07 -1.29 0.54 -154.50 -0.08 -1.37 16 16 C -0.13 -2.06 8.05 37.16 0.30 -1.76 16 17 C -0.13 -2.09 8.05 37.16 0.30 -1.79 16 18 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 19 C -0.51 -13.24 7.65 -34.44 -0.26 -13.51 16 20 H 0.06 1.47 5.68 -52.49 -0.30 1.17 16 21 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 22 N -0.89 -26.11 13.29 55.43 0.74 -25.37 16 23 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.45 6.06 -51.93 -0.31 0.14 16 30 H 0.41 2.16 9.06 45.56 0.41 2.57 16 31 H 0.41 1.55 9.06 45.56 0.41 1.97 16 32 H 0.11 0.58 6.07 -51.92 -0.32 0.27 16 33 H 0.11 0.63 7.63 -51.93 -0.40 0.23 16 34 H 0.40 3.99 6.16 -40.82 -0.25 3.74 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.03 0.37 6.86 -51.93 -0.36 0.01 16 38 H 0.07 1.21 6.62 -51.92 -0.34 0.86 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.21 6.62 -51.93 -0.34 0.87 16 42 H 0.03 0.38 6.86 -51.93 -0.36 0.02 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -36.74 371.56 -6.12 -42.86 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.67 Total: 3.29 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -1.81 Total: 0.68 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.17 Total: -48.90 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.39 Total: -19.33 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.74 -6.12 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362521164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.862 kcal (2) G-P(sol) polarization free energy of solvation -36.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds