Wall clock time and date at job start Tue Mar 31 2020 14:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32483 * 120.37309 * 2 1 4 4 C 1.32296 * 120.90012 * 179.97438 * 3 2 1 5 5 O 1.35460 * 119.16332 * 180.02562 * 4 3 2 6 6 N 1.32307 * 121.67212 * 359.71679 * 4 3 2 7 7 C 1.32757 * 120.65814 * 0.57386 * 6 4 3 8 8 O 1.35512 * 120.47582 * 179.71413 * 7 6 4 9 9 C 1.38189 * 120.37738 * 179.97438 * 2 1 3 10 10 C 1.50701 * 120.76416 * 0.03601 * 9 2 1 11 11 C 1.50704 * 109.47133 * 269.98584 * 10 9 2 12 12 O 1.21279 * 119.99737 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99848 * 180.02562 * 11 10 9 14 14 C 1.46507 * 119.99652 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47002 * 179.97438 * 14 13 11 16 16 C 1.53005 * 109.47094 * 300.00396 * 15 14 13 17 17 C 1.53003 * 109.47113 * 60.00166 * 15 14 13 18 18 C 1.53003 * 109.47405 * 180.02562 * 15 14 13 19 19 C 1.50696 * 109.47181 * 179.97438 * 18 15 14 20 20 H 1.08001 * 120.00193 * 0.02562 * 19 18 15 21 21 C 1.37882 * 119.99870 * 179.97438 * 19 18 15 22 22 N 1.31517 * 119.99550 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99929 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47186 * 90.00286 * 23 21 19 25 25 H 1.48502 * 109.47310 * 210.00142 * 23 21 19 26 26 H 1.48501 * 109.47499 * 330.00433 * 23 21 19 27 27 H 1.09005 * 109.46471 * 270.01793 * 1 2 3 28 28 H 1.08999 * 109.47220 * 30.01490 * 1 2 3 29 29 H 1.08995 * 109.47307 * 150.02192 * 1 2 3 30 30 H 0.96689 * 114.00048 * 89.99411 * 5 4 3 31 31 H 0.96700 * 114.00230 * 269.72399 * 8 7 6 32 32 H 1.09007 * 109.47259 * 29.97714 * 10 9 2 33 33 H 1.08994 * 109.47173 * 149.98136 * 10 9 2 34 34 H 0.96998 * 120.00197 * 359.97438 * 13 11 10 35 35 H 1.08993 * 109.47110 * 299.99966 * 14 13 11 36 36 H 1.09001 * 109.46718 * 60.00645 * 14 13 11 37 37 H 1.09001 * 109.47247 * 60.00294 * 16 15 14 38 38 H 1.09011 * 109.46719 * 179.97438 * 16 15 14 39 39 H 1.08994 * 109.47133 * 299.99828 * 16 15 14 40 40 H 1.09002 * 109.46784 * 60.00248 * 17 15 14 41 41 H 1.08997 * 109.47510 * 180.02562 * 17 15 14 42 42 H 1.08999 * 109.46762 * 299.99915 * 17 15 14 43 43 H 1.08993 * 109.46696 * 300.00248 * 18 15 14 44 44 H 1.09000 * 109.46590 * 60.00146 * 18 15 14 45 45 H 0.96999 * 119.99223 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1769 1.1430 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1490 2.3441 0.0010 6 7 4.2049 0.0356 0.0066 7 6 3.5993 -1.1458 0.0010 8 8 4.3250 -2.2902 0.0015 9 6 2.2059 -1.1922 0.0005 10 6 1.4785 -2.5120 0.0003 11 6 1.2356 -2.9520 1.4211 12 8 1.6161 -2.2619 2.3430 13 7 0.5965 -4.1127 1.6671 14 6 0.3608 -4.5407 3.0483 15 6 -0.3777 -5.8806 3.0481 16 6 -1.7180 -5.7241 2.3269 17 6 0.4701 -6.9302 2.3266 18 6 -0.6244 -6.3273 4.4906 19 6 -1.3524 -7.6467 4.4903 20 1 -1.6128 -8.1197 3.5549 21 6 -1.6853 -8.2507 5.6843 22 7 -1.3678 -7.6749 6.8233 23 14 -2.5870 -9.8866 5.6840 24 1 -1.5999 -10.9959 5.6839 25 1 -3.4391 -9.9824 6.8964 26 1 -3.4390 -9.9820 4.4714 27 1 -0.3632 0.0003 1.0278 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5135 30 1 4.3371 2.6891 0.8845 31 1 4.5361 -2.6225 -0.8818 32 1 0.5237 -2.4007 -0.5137 33 1 2.0827 -3.2597 -0.5134 34 1 0.2925 -4.6648 0.9298 35 1 1.3156 -4.6517 3.5622 36 1 -0.2437 -3.7932 3.5621 37 1 -1.5427 -5.4058 1.2992 38 1 -2.2440 -6.6789 2.3264 39 1 -2.3220 -4.9764 2.8408 40 1 1.4249 -7.0417 2.8405 41 1 -0.0562 -7.8847 2.3261 42 1 0.6454 -6.6117 1.2991 43 1 0.3302 -6.4386 5.0046 44 1 -1.2287 -5.5794 5.0041 45 1 -1.6023 -8.0997 7.6632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362521164.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:33 Heat of formation + Delta-G solvation = -115.924303 kcal Electronic energy + Delta-G solvation = -27383.131351 eV Core-core repulsion = 23399.876902 eV Total energy + Delta-G solvation = -3983.254449 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.59250 -40.79041 -39.31170 -38.61485 -38.08983 -35.29124 -35.20977 -34.01871 -33.64685 -30.45931 -29.21654 -28.59231 -27.90072 -27.12847 -25.04413 -24.23992 -23.74955 -21.44793 -20.40197 -19.83994 -19.71145 -19.11188 -18.35454 -18.05661 -17.04556 -16.90488 -16.47536 -16.46436 -16.36095 -15.42420 -15.23294 -15.15331 -14.79504 -14.65349 -14.45914 -14.22082 -13.92785 -13.90290 -13.64389 -13.54340 -13.43077 -12.91361 -12.80919 -12.70537 -12.60443 -12.49446 -12.29140 -12.19870 -11.97251 -11.93050 -11.50008 -11.49171 -11.19229 -10.89730 -10.81942 -10.50379 -10.42744 -10.15034 -10.01275 -8.12992 -6.20708 -0.44306 -0.17892 1.43785 1.43973 1.54312 1.70604 1.78446 2.15218 2.41200 2.47753 2.60815 3.19369 3.21794 3.48637 3.71002 3.88075 3.98013 4.10580 4.12699 4.21881 4.27673 4.42820 4.57524 4.72470 4.73990 4.76790 4.83398 4.85374 4.88409 5.02536 5.15992 5.18246 5.27290 5.45643 5.50610 5.54694 5.59112 5.61008 5.66556 5.84617 5.92246 6.31813 6.42425 6.47580 6.66035 6.82698 6.95392 7.34925 7.47323 8.99627 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028982 B = 0.002315 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.873483 B =12092.588790 C =12225.263981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 N -0.548 5.548 4 C 0.508 3.492 5 O -0.464 6.464 6 N -0.580 5.580 7 C 0.389 3.611 8 O -0.475 6.475 9 C -0.197 4.197 10 C -0.080 4.080 11 C 0.511 3.489 12 O -0.592 6.592 13 N -0.705 5.705 14 C 0.143 3.857 15 C -0.064 4.064 16 C -0.122 4.122 17 C -0.122 4.122 18 C 0.037 3.963 19 C -0.510 4.510 20 H 0.075 0.925 21 C -0.008 4.008 22 N -0.941 5.941 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.292 1.292 26 H -0.257 1.257 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.118 0.882 30 H 0.430 0.570 31 H 0.430 0.570 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.417 0.583 35 H 0.037 0.963 36 H 0.044 0.956 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.036 0.964 40 H 0.032 0.968 41 H 0.054 0.946 42 H 0.077 0.923 43 H -0.018 1.018 44 H -0.016 1.016 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.568 11.912 -22.364 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.069 3.931 3 N -0.276 5.276 4 C 0.203 3.797 5 O -0.271 6.271 6 N -0.317 5.317 7 C 0.203 3.797 8 O -0.287 6.287 9 C -0.203 4.203 10 C -0.120 4.120 11 C 0.299 3.701 12 O -0.473 6.473 13 N -0.358 5.358 14 C 0.019 3.981 15 C -0.064 4.064 16 C -0.179 4.179 17 C -0.180 4.180 18 C 0.000 4.000 19 C -0.548 4.548 20 H 0.093 0.907 21 C -0.204 4.204 22 N -0.582 5.582 23 Si 0.784 3.216 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.181 1.181 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.136 0.864 30 H 0.293 0.707 31 H 0.294 0.706 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.256 0.744 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.000 1.000 44 H 0.003 0.997 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.312 13.246 -21.544 25.842 hybrid contribution -0.232 -1.518 1.060 1.866 sum 5.080 11.727 -20.484 24.144 Atomic orbital electron populations 1.21056 0.84839 1.06389 1.04535 1.21872 0.98962 0.85685 0.86615 1.67920 1.08837 1.32034 1.18805 1.20007 0.84046 0.84947 0.90666 1.84642 1.76002 1.30167 1.36253 1.67393 1.44649 0.99371 1.20299 1.19145 0.87004 0.84695 0.88882 1.84770 1.73695 1.33968 1.36224 1.21155 0.93530 0.98121 1.07500 1.20570 1.04732 0.93452 0.93279 1.21064 0.76603 0.80477 0.91969 1.90725 1.52550 1.55639 1.48362 1.45891 1.58597 1.22478 1.08802 1.21141 0.98379 0.95612 0.83004 1.20695 0.96013 0.92682 0.97007 1.21703 0.95284 1.01542 0.99346 1.21708 0.98256 0.98704 0.99302 1.18999 0.94398 0.95240 0.91412 1.21607 1.35343 1.05386 0.92491 0.90693 1.25977 0.97401 1.01486 0.95572 1.70133 1.49211 1.40883 0.97981 0.85540 0.78568 0.79717 0.77788 1.20279 1.21782 1.18066 0.89648 0.88506 0.86403 0.70657 0.70554 0.82954 0.83937 0.74405 0.94408 0.93755 0.90337 0.92775 0.94476 0.94875 0.92662 0.90459 1.00012 0.99714 0.93265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.42 9.83 71.24 0.70 -0.72 16 2 C 0.21 4.27 6.82 42.45 0.29 4.56 16 3 N -0.55 -13.23 10.40 -301.71 -3.14 -16.36 16 4 C 0.51 12.67 8.71 180.58 1.57 14.24 16 5 O -0.46 -9.48 13.64 -87.58 -1.19 -10.67 16 6 N -0.58 -15.11 10.49 -426.36 -4.47 -19.58 16 7 C 0.39 8.71 7.81 84.84 0.66 9.37 16 8 O -0.48 -8.52 12.74 -88.14 -1.12 -9.64 16 9 C -0.20 -3.75 4.42 -19.59 -0.09 -3.84 16 10 C -0.08 -0.99 5.28 29.10 0.15 -0.84 16 11 C 0.51 12.06 7.82 87.66 0.69 12.74 16 12 O -0.59 -21.01 16.03 -3.03 -0.05 -21.05 16 13 N -0.70 -15.73 4.96 -463.06 -2.30 -18.02 16 14 C 0.14 4.74 4.57 86.38 0.39 5.13 16 15 C -0.06 -2.23 0.54 -52.18 -0.03 -2.25 16 16 C -0.12 -3.63 8.05 71.98 0.58 -3.05 16 17 C -0.12 -3.76 8.05 71.98 0.58 -3.18 16 18 C 0.04 1.84 4.04 29.85 0.12 1.96 16 19 C -0.51 -26.64 7.65 25.60 0.20 -26.45 16 20 H 0.08 3.62 5.68 -2.91 -0.02 3.60 16 21 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 22 N -0.94 -56.93 13.29 21.45 0.28 -56.65 16 23 Si 0.96 42.83 29.54 68.60 2.03 44.85 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 26 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 27 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.12 0.68 6.06 -2.39 -0.01 0.66 16 30 H 0.43 4.60 9.06 -74.06 -0.67 3.93 16 31 H 0.43 2.18 9.06 -74.06 -0.67 1.51 16 32 H 0.15 0.63 6.07 -2.38 -0.01 0.62 16 33 H 0.14 0.84 7.63 -2.39 -0.02 0.82 16 34 H 0.42 6.08 6.16 -92.71 -0.57 5.51 16 35 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.08 1.57 6.86 -2.39 -0.02 1.55 16 38 H 0.05 1.78 6.62 -2.38 -0.02 1.76 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 42 H 0.08 1.62 6.86 -2.39 -0.02 1.61 16 43 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 44 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 45 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -85.45 371.56 -4.52 -89.98 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -0.85 Total: 9.43 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.28 Total: 7.73 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -9.62 Total: -110.61 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -2.37 Total: -41.37 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -85.45 -4.52 -89.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362521164.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.947 kcal (2) G-P(sol) polarization free energy of solvation -85.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds