Wall clock time and date at job start Tue Mar 31 2020 14:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32481 * 120.37605 * 2 1 4 4 C 1.32299 * 120.90475 * 179.97438 * 3 2 1 5 5 O 1.35449 * 119.16422 * 180.02562 * 4 3 2 6 6 N 1.32318 * 121.66711 * 359.97438 * 4 3 2 7 7 C 1.32752 * 120.65886 * 359.76900 * 6 4 3 8 8 O 1.35512 * 120.47196 * 180.26316 * 7 6 4 9 9 C 1.38190 * 120.37488 * 179.97438 * 2 1 3 10 10 C 1.50697 * 120.76391 * 0.02562 * 9 2 1 11 11 C 1.52997 * 109.47466 * 89.99920 * 10 9 2 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 9 13 13 O 1.21280 * 119.99781 * 0.02562 * 12 11 10 14 14 N 1.34780 * 119.99795 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99566 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.46983 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.47143 * 300.00028 * 16 15 14 18 18 C 1.52996 * 109.47131 * 59.99859 * 16 15 14 19 19 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 20 20 H 1.08006 * 119.99920 * 359.97438 * 19 16 15 21 21 C 1.37876 * 120.00428 * 180.02562 * 19 16 15 22 22 N 1.31520 * 119.99996 * 359.97438 * 21 19 16 23 23 Si 1.86805 * 120.00227 * 179.97438 * 21 19 16 24 24 H 1.48503 * 109.46845 * 90.00227 * 23 21 19 25 25 H 1.48499 * 109.46907 * 209.99714 * 23 21 19 26 26 H 1.48495 * 109.46933 * 330.00015 * 23 21 19 27 27 H 1.09001 * 109.47105 * 270.02520 * 1 2 3 28 28 H 1.08999 * 109.46956 * 30.01713 * 1 2 3 29 29 H 1.08995 * 109.47366 * 150.02215 * 1 2 3 30 30 H 0.96706 * 114.00111 * 90.00494 * 5 4 3 31 31 H 0.96692 * 114.00588 * 270.21636 * 8 7 6 32 32 H 1.09002 * 109.47120 * 329.99673 * 10 9 2 33 33 H 1.08998 * 109.46862 * 210.00475 * 10 9 2 34 34 H 1.09002 * 109.47153 * 59.99773 * 11 10 9 35 35 H 1.09001 * 109.46832 * 299.99964 * 11 10 9 36 36 H 0.96995 * 120.00011 * 0.02562 * 14 12 11 37 37 H 1.09001 * 109.47487 * 300.00114 * 15 14 12 38 38 H 1.09002 * 109.47182 * 60.00342 * 15 14 12 39 39 H 1.09004 * 109.46930 * 59.99935 * 17 16 15 40 40 H 1.09000 * 109.47312 * 179.97438 * 17 16 15 41 41 H 1.09002 * 109.47067 * 300.00018 * 17 16 15 42 42 H 1.09001 * 109.46997 * 60.00426 * 18 16 15 43 43 H 1.09004 * 109.47552 * 180.02562 * 18 16 15 44 44 H 1.08996 * 109.47452 * 300.00000 * 18 16 15 45 45 H 0.96993 * 120.00405 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1769 1.1429 0.0000 4 6 3.4998 1.1552 0.0005 5 8 4.1489 2.3440 0.0010 6 7 4.2048 0.0354 0.0015 7 6 3.5991 -1.1459 0.0067 8 8 4.3249 -2.2902 0.0131 9 6 2.2057 -1.1922 0.0005 10 6 1.4783 -2.5120 0.0005 11 6 1.2327 -2.9590 -1.4419 12 6 0.5058 -4.2792 -1.4418 13 8 0.2127 -4.8099 -0.3914 14 7 0.1806 -4.8694 -2.6090 15 6 -0.5265 -6.1525 -2.6089 16 6 -0.7721 -6.5995 -4.0513 17 6 -1.6197 -5.5501 -4.7733 18 6 0.5685 -6.7560 -4.7720 19 6 -1.5000 -7.9191 -4.0513 20 1 -1.7610 -8.3918 -3.1160 21 6 -1.8319 -8.5234 -5.2453 22 7 -1.5136 -7.9480 -6.3844 23 14 -2.7335 -10.1594 -5.2452 24 1 -4.1987 -9.9171 -5.2465 25 1 -2.3585 -10.9313 -6.4571 26 1 -2.3603 -10.9302 -4.0321 27 1 -0.3633 0.0005 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3634 -0.8901 -0.5135 30 1 4.3372 2.6890 0.8846 31 1 4.5394 -2.6250 -0.8683 32 1 0.5233 -2.4005 0.5140 33 1 2.0822 -3.2596 0.5148 34 1 2.1877 -3.0705 -1.9554 35 1 0.6288 -2.2113 -1.9561 36 1 0.4147 -4.4447 -3.4490 37 1 0.0775 -6.9002 -2.0950 38 1 -1.4814 -6.0410 -2.0951 39 1 -1.0936 -4.5955 -4.7733 40 1 -1.7943 -5.8684 -5.8010 41 1 -2.5747 -5.4386 -4.2599 42 1 1.1723 -7.5037 -4.2577 43 1 0.3936 -7.0741 -5.7998 44 1 1.0946 -5.8014 -4.7721 45 1 -1.7467 -8.3733 -7.2243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362535466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:08 Heat of formation + Delta-G solvation = -110.486661 kcal Electronic energy + Delta-G solvation = -27159.469378 eV Core-core repulsion = 23176.450723 eV Total energy + Delta-G solvation = -3983.018655 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.55130 -40.71538 -39.31280 -38.22085 -38.05234 -35.75357 -34.93500 -34.34750 -32.74859 -31.28816 -29.52541 -27.53029 -27.51819 -27.02977 -25.52881 -24.03451 -23.14071 -21.27006 -20.55122 -20.36980 -19.67342 -19.04219 -18.43202 -17.64400 -16.96815 -16.70136 -16.59439 -16.55595 -16.27616 -15.54902 -15.12243 -14.95079 -14.75492 -14.61639 -14.39821 -13.97311 -13.90731 -13.51550 -13.49226 -13.33259 -13.18718 -13.12587 -13.02970 -12.66462 -12.62670 -12.58445 -12.22647 -12.12375 -12.06197 -11.87671 -11.49962 -11.44991 -11.23719 -10.81387 -10.65097 -10.38931 -10.37878 -10.10254 -9.85849 -8.01109 -6.16406 -0.43036 -0.19994 1.42735 1.46267 1.53793 1.78634 1.84022 2.22062 2.37890 2.52364 2.63025 3.20675 3.22672 3.56054 3.71318 3.83338 4.09267 4.16324 4.28511 4.34477 4.50224 4.56773 4.63206 4.70671 4.76105 4.77970 4.89027 5.04899 5.05730 5.09440 5.09763 5.14721 5.23263 5.35722 5.42565 5.66101 5.68926 5.69271 5.70527 6.19049 6.25414 6.43563 6.46012 6.48544 6.75900 6.83902 6.88692 7.41752 7.51456 8.97416 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028003 B = 0.002239 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.637182 B =12504.731171 C =12603.883830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.212 3.788 3 N -0.544 5.544 4 C 0.509 3.491 5 O -0.465 6.465 6 N -0.575 5.575 7 C 0.384 3.616 8 O -0.477 6.477 9 C -0.204 4.204 10 C -0.045 4.045 11 C -0.126 4.126 12 C 0.505 3.495 13 O -0.590 6.590 14 N -0.713 5.713 15 C 0.148 3.852 16 C 0.050 3.950 17 C -0.121 4.121 18 C -0.122 4.122 19 C -0.527 4.527 20 H 0.044 0.956 21 C 0.028 3.972 22 N -0.899 5.899 23 Si 0.942 3.058 24 H -0.279 1.279 25 H -0.284 1.284 26 H -0.276 1.276 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.432 0.568 31 H 0.429 0.571 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.409 0.591 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.060 0.940 44 H 0.040 0.960 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.116 18.294 9.792 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.068 3.932 3 N -0.272 5.272 4 C 0.204 3.796 5 O -0.272 6.272 6 N -0.313 5.313 7 C 0.198 3.802 8 O -0.287 6.287 9 C -0.210 4.210 10 C -0.084 4.084 11 C -0.166 4.166 12 C 0.293 3.707 13 O -0.471 6.471 14 N -0.364 5.364 15 C 0.024 3.976 16 C 0.050 3.950 17 C -0.179 4.179 18 C -0.179 4.179 19 C -0.566 4.566 20 H 0.062 0.938 21 C -0.172 4.172 22 N -0.538 5.538 23 Si 0.769 3.231 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.201 1.201 27 H 0.122 0.878 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.295 0.705 31 H 0.293 0.707 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.246 0.754 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.037 0.963 42 H 0.036 0.964 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.390 18.764 10.310 22.995 hybrid contribution -0.414 -1.719 -0.473 1.830 sum 7.977 17.045 9.837 21.235 Atomic orbital electron populations 1.21040 0.85010 1.05536 1.05396 1.21824 0.98737 0.85456 0.87194 1.67946 1.08828 1.31900 1.18514 1.19996 0.83971 0.84909 0.90729 1.84672 1.75977 1.30162 1.36339 1.67433 1.44619 0.99273 1.19973 1.19132 0.86927 0.84632 0.89539 1.84677 1.73651 1.34115 1.36297 1.21554 0.93602 0.98461 1.07404 1.20030 1.01019 0.91007 0.96308 1.21645 1.02729 0.93394 0.98796 1.21215 0.78914 0.87519 0.83032 1.90680 1.56585 1.67165 1.32690 1.46170 1.58283 1.22917 1.09040 1.21211 0.94236 0.83563 0.98590 1.18355 0.93538 0.93809 0.89336 1.21677 0.97717 0.96266 1.02258 1.21676 0.96071 0.97923 1.02272 1.21297 1.37230 1.05884 0.92143 0.93811 1.25438 0.96381 0.99916 0.95472 1.69904 1.47267 1.39316 0.97307 0.85806 0.79031 0.80957 0.77287 1.20532 1.20982 1.20123 0.87754 0.88794 0.88274 0.70502 0.70746 0.89023 0.90116 0.86739 0.86364 0.75382 0.94548 0.94349 0.94103 0.92155 0.96278 0.96374 0.92134 0.94112 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 9.44 71.23 0.67 -0.59 16 2 C 0.21 3.59 6.81 42.45 0.29 3.88 16 3 N -0.54 -11.04 10.40 -301.73 -3.14 -14.18 16 4 C 0.51 10.71 8.71 180.57 1.57 12.28 16 5 O -0.46 -7.94 13.64 -87.46 -1.19 -9.13 16 6 N -0.58 -12.85 10.49 -426.36 -4.47 -17.32 16 7 C 0.38 7.44 7.81 84.84 0.66 8.11 16 8 O -0.48 -7.87 12.74 -88.14 -1.12 -8.99 16 9 C -0.20 -3.48 5.18 -19.59 -0.10 -3.59 16 10 C -0.04 -0.76 3.78 29.85 0.11 -0.65 16 11 C -0.13 -2.02 5.57 29.85 0.17 -1.86 16 12 C 0.51 13.77 7.83 87.66 0.69 14.46 16 13 O -0.59 -21.25 15.98 -3.03 -0.05 -21.30 16 14 N -0.71 -21.10 4.96 -463.06 -2.30 -23.39 16 15 C 0.15 5.85 4.50 86.38 0.39 6.24 16 16 C 0.05 2.20 0.50 -52.93 -0.03 2.18 16 17 C -0.12 -5.09 8.08 71.98 0.58 -4.51 16 18 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 19 C -0.53 -27.07 8.01 25.60 0.21 -26.86 16 20 H 0.04 2.30 7.74 -2.91 -0.02 2.28 16 21 C 0.03 1.42 5.15 84.65 0.44 1.86 16 22 N -0.90 -46.95 9.36 21.45 0.20 -46.75 16 23 Si 0.94 41.86 29.54 68.60 2.03 43.88 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 26 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 27 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 0.95 6.03 -2.39 -0.01 0.94 16 30 H 0.43 2.71 9.06 -74.05 -0.67 2.04 16 31 H 0.43 3.02 9.06 -74.06 -0.67 2.35 16 32 H 0.09 1.58 6.76 -2.39 -0.02 1.56 16 33 H 0.08 1.65 7.57 -2.39 -0.02 1.63 16 34 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.12 1.39 7.47 -2.39 -0.02 1.37 16 36 H 0.41 10.22 6.16 -92.71 -0.57 9.65 16 37 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.04 1.38 6.86 -2.38 -0.02 1.37 16 40 H 0.06 2.87 6.07 -2.39 -0.01 2.85 16 41 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.06 2.88 6.07 -2.39 -0.01 2.87 16 44 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 45 H 0.26 13.10 8.31 -92.71 -0.77 12.33 16 Total: -1.00 -70.51 368.91 -4.66 -75.18 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -0.85 Total: 15.59 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: 6.23 Total: 6.41 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -9.70 Total: -101.64 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -2.36 Total: -39.42 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.88 kcal Total: -70.51 -4.66 -75.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362535466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.311 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds