Wall clock time and date at job start Tue Mar 31 2020 14:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35240 * 126.06976 * 2 1 4 4 C 1.40400 * 107.87044 * 180.02562 * 3 2 1 5 5 N 1.40165 * 125.97373 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99839 * 0.02562 * 5 4 3 7 7 O 1.21288 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.54554 * 59.99737 * 8 6 5 10 10 O 1.42906 * 109.47274 * 300.00002 * 9 8 6 11 11 C 1.53174 * 109.54593 * 299.82054 * 8 6 5 12 12 C 1.53282 * 109.06342 * 297.03154 * 11 8 6 13 13 O 1.42907 * 109.45921 * 302.44624 * 12 11 8 14 14 C 1.42901 * 114.09816 * 61.15292 * 13 12 11 15 15 C 1.53091 * 109.41878 * 298.84331 * 14 13 12 16 16 N 1.31215 * 108.05599 * 0.26320 * 4 3 2 17 17 N 1.34968 * 126.07470 * 180.02562 * 2 1 3 18 18 C 1.46504 * 125.97350 * 359.97438 * 17 2 1 19 19 C 1.50693 * 109.47419 * 89.99884 * 18 17 2 20 20 H 1.08004 * 119.99657 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00624 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99292 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47148 * 90.00460 * 23 21 19 25 25 H 1.48505 * 109.46753 * 210.00040 * 23 21 19 26 26 H 1.48496 * 109.47295 * 330.00048 * 23 21 19 27 27 H 1.09002 * 109.47440 * 90.02635 * 1 2 3 28 28 H 1.09003 * 109.46528 * 210.01997 * 1 2 3 29 29 H 1.08999 * 109.47550 * 330.01929 * 1 2 3 30 30 H 1.08005 * 126.06219 * 359.97438 * 3 2 1 31 31 H 0.97005 * 119.99971 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47215 * 59.99896 * 9 8 6 33 33 H 1.09002 * 109.47117 * 179.97438 * 9 8 6 34 34 H 0.96694 * 114.00295 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.52547 * 57.01757 * 11 8 6 36 36 H 1.09001 * 109.52768 * 177.21018 * 11 8 6 37 37 H 1.08996 * 109.46356 * 182.44743 * 12 11 8 38 38 H 1.09005 * 109.46755 * 62.43963 * 12 11 8 39 39 H 1.09005 * 109.47964 * 178.85648 * 14 13 12 40 40 H 1.09009 * 109.48796 * 58.83494 * 14 13 12 41 41 H 1.08994 * 109.51993 * 297.70195 * 15 14 13 42 42 H 1.08997 * 109.57535 * 177.54498 * 15 14 13 43 43 H 1.09003 * 109.47119 * 210.00480 * 18 17 2 44 44 H 1.09006 * 109.46712 * 330.00117 * 18 17 2 45 45 H 0.97005 * 119.99479 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7734 1.4751 -0.0003 6 6 4.6366 2.8159 0.0012 7 8 3.5300 3.3125 0.0018 8 6 5.8584 3.6980 0.0009 9 6 6.6943 3.4143 -1.2488 10 8 7.0976 2.0433 -1.2510 11 6 6.6952 3.4146 1.2522 12 6 5.8752 3.7770 2.4955 13 8 5.4818 5.1489 2.4232 14 6 4.6589 5.4614 1.2974 15 6 5.4290 5.1683 0.0071 16 7 3.6337 -0.6575 -0.0067 17 7 2.3017 -1.0909 -0.0005 18 6 1.8502 -2.4846 -0.0006 19 6 1.6948 -2.9622 -1.4213 20 1 1.9112 -2.2945 -2.2422 21 6 1.2774 -4.2519 -1.6734 22 7 1.0144 -5.0650 -0.6738 23 14 1.0855 -4.8441 -3.4346 24 1 2.3666 -5.4322 -3.9015 25 1 0.0166 -5.8732 -3.4971 26 1 0.7206 -3.6979 -4.3053 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3632 -0.8899 0.5142 29 1 -0.3634 0.8901 0.5135 30 1 1.9718 2.1211 -0.0004 31 1 5.6584 1.0779 -0.0004 32 1 6.0988 3.6192 -2.1384 33 1 7.5774 4.0532 -1.2479 34 1 7.6326 1.7919 -2.0162 35 1 6.9588 2.3574 1.2826 36 1 7.6034 4.0168 1.2272 37 1 6.4801 3.6189 3.3883 38 1 4.9873 3.1463 2.5416 39 1 4.3877 6.5167 1.3272 40 1 3.7551 4.8528 1.3276 41 1 6.3116 5.8058 -0.0431 42 1 4.7886 5.3644 -0.8528 43 1 2.5850 -3.1046 0.5130 44 1 0.8916 -2.5559 0.5136 45 1 0.7211 -5.9725 -0.8512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362608424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:06 Heat of formation + Delta-G solvation = -57.638444 kcal Electronic energy + Delta-G solvation = -28455.033486 eV Core-core repulsion = 24474.306501 eV Total energy + Delta-G solvation = -3980.726984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27879 -40.25262 -38.15595 -37.19356 -34.82157 -34.06046 -33.32517 -31.55230 -31.11185 -30.74559 -27.80705 -26.70991 -26.30924 -24.20734 -23.81080 -22.90412 -22.24096 -20.32377 -19.69329 -18.61011 -17.72551 -16.76828 -16.68168 -16.37113 -16.11462 -15.99913 -15.44588 -15.31040 -14.85284 -14.72648 -14.44894 -14.12487 -13.83276 -13.63983 -13.37942 -13.07915 -12.57322 -12.48742 -12.46225 -12.29581 -12.16173 -11.85881 -11.64977 -11.51734 -11.38621 -11.13589 -10.96606 -10.83374 -10.65915 -10.41908 -10.35233 -10.22335 -9.88779 -9.72850 -9.49627 -9.28941 -8.64137 -7.89540 -7.41820 -6.25288 -4.32765 2.30139 2.81325 2.93843 3.21284 3.27409 3.32196 3.62513 3.74448 3.79017 3.87528 4.27042 4.30034 4.38063 4.64173 4.75996 4.84059 5.01485 5.04459 5.08453 5.12520 5.35778 5.36186 5.41825 5.48015 5.53970 5.62112 5.75130 5.78019 5.81533 5.94535 5.97431 6.11409 6.29844 6.46815 6.59016 6.77487 6.94509 7.05284 7.06502 7.24503 7.52109 7.67328 7.72582 7.89589 8.07172 8.33634 8.68851 8.76739 9.33384 10.81972 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.003106 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.837103 B = 9011.507211 C = 9561.064207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 C -0.292 4.292 4 C 0.263 3.737 5 N -0.615 5.615 6 C 0.530 3.470 7 O -0.520 6.520 8 C -0.075 4.075 9 C 0.088 3.912 10 O -0.572 6.572 11 C -0.140 4.140 12 C 0.056 3.944 13 O -0.384 6.384 14 C 0.049 3.951 15 C -0.127 4.127 16 N -0.319 5.319 17 N -0.317 5.317 18 C 0.258 3.742 19 C -0.535 4.535 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.892 5.892 23 Si 0.906 3.094 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.272 1.272 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.158 0.842 31 H 0.418 0.582 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.389 0.611 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.646 19.167 1.697 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.323 4.323 4 C 0.010 3.990 5 N -0.264 5.264 6 C 0.315 3.685 7 O -0.395 6.395 8 C -0.078 4.078 9 C 0.010 3.990 10 O -0.379 6.379 11 C -0.177 4.177 12 C -0.021 4.021 13 O -0.302 6.302 14 C -0.027 4.027 15 C -0.165 4.165 16 N -0.150 5.150 17 N -0.099 5.099 18 C 0.141 3.859 19 C -0.574 4.574 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.530 5.530 23 Si 0.733 3.267 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.197 1.197 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.175 0.825 31 H 0.257 0.743 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.238 0.762 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.217 18.284 2.434 21.086 hybrid contribution 0.252 -0.296 -1.854 1.894 sum 10.469 17.988 0.581 20.821 Atomic orbital electron populations 1.20326 0.87948 1.02782 1.03121 1.21060 0.94869 0.87243 1.00967 1.21236 0.89821 0.99690 1.21585 1.19071 0.87371 0.89655 1.02916 1.42608 1.07953 1.04825 1.71027 1.20221 0.90400 0.81748 0.76092 1.90588 1.26600 1.73849 1.48442 1.20958 0.93811 0.96047 0.97009 1.22129 0.97340 0.83474 0.96038 1.86289 1.74707 1.26416 1.50463 1.22260 0.98770 1.03637 0.93078 1.22653 0.98272 0.83435 0.97763 1.87897 1.69892 1.26145 1.46298 1.22833 0.93944 1.01909 0.84007 1.21983 1.01603 0.92242 1.00696 1.77278 0.99737 1.08615 1.29349 1.48996 1.01051 1.07738 1.52161 1.19679 0.95949 0.71381 0.98911 1.21318 1.46705 0.97940 0.91388 0.91805 1.24927 0.94691 0.96077 0.98103 1.69924 1.45006 1.07056 1.30997 0.86354 0.78001 0.78558 0.83760 1.20351 1.20870 1.19691 0.90475 0.90876 0.90874 0.82453 0.74304 0.92708 0.92067 0.76202 0.89475 0.89793 0.88400 0.92938 0.88816 0.90192 0.90234 0.89684 0.93031 0.92824 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.11 36.00 0.36 -1.09 16 2 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 3 C -0.29 -6.10 9.52 -39.84 -0.38 -6.48 16 4 C 0.26 5.49 8.11 -154.39 -1.25 4.24 16 5 N -0.62 -10.13 4.97 -11.13 -0.06 -10.18 16 6 C 0.53 7.77 5.11 -10.99 -0.06 7.72 16 7 O -0.52 -8.84 10.98 5.55 0.06 -8.78 16 8 C -0.07 -0.77 0.53 -155.48 -0.08 -0.85 16 9 C 0.09 0.71 5.91 37.16 0.22 0.93 16 10 O -0.57 -4.89 10.57 -35.23 -0.37 -5.26 16 11 C -0.14 -1.31 4.68 -26.50 -0.12 -1.44 16 12 C 0.06 0.60 6.62 37.30 0.25 0.85 16 13 O -0.38 -4.55 10.77 -35.23 -0.38 -4.93 16 14 C 0.05 0.54 6.55 37.20 0.24 0.78 16 15 C -0.13 -1.18 4.56 -26.59 -0.12 -1.30 16 16 N -0.32 -7.55 12.59 31.44 0.40 -7.15 16 17 N -0.32 -7.64 3.59 -58.33 -0.21 -7.85 16 18 C 0.26 6.71 5.99 -5.19 -0.03 6.67 16 19 C -0.53 -14.86 9.39 -34.44 -0.32 -15.18 16 20 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 21 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 22 N -0.89 -25.16 13.29 55.43 0.74 -24.42 16 23 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.07 1.27 7.07 -51.93 -0.37 0.91 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.16 3.17 5.92 -52.48 -0.31 2.86 16 31 H 0.42 6.25 6.19 -40.82 -0.25 6.00 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.39 1.77 9.12 45.56 0.42 2.18 16 35 H 0.09 0.83 7.16 -51.93 -0.37 0.46 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.05 0.67 7.38 -51.93 -0.38 0.29 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 1.06 5.81 -51.92 -0.30 0.76 16 41 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 43 H 0.05 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.05 1.37 7.04 -51.93 -0.37 1.01 16 45 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -33.29 360.19 -7.08 -40.37 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.70 Total: 8.73 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -1.96 Total: -2.10 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.87 Total: -49.61 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.69 Total: -18.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.29 -7.08 -40.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362608424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.272 kcal (2) G-P(sol) polarization free energy of solvation -33.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds