Wall clock time and date at job start Tue Mar 31 2020 14:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35240 * 126.06976 * 2 1 4 4 C 1.40400 * 107.87044 * 180.02562 * 3 2 1 5 5 N 1.40165 * 125.97373 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99839 * 0.02562 * 5 4 3 7 7 O 1.21288 * 119.99985 * 359.97438 * 6 5 4 8 8 C 1.50696 * 119.99735 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.54554 * 59.99737 * 8 6 5 10 10 O 1.42906 * 109.47274 * 300.00002 * 9 8 6 11 11 C 1.53174 * 109.54593 * 299.82054 * 8 6 5 12 12 C 1.53282 * 109.06342 * 297.03154 * 11 8 6 13 13 O 1.42907 * 109.45921 * 302.44624 * 12 11 8 14 14 C 1.42901 * 114.09816 * 61.15292 * 13 12 11 15 15 C 1.53091 * 109.41878 * 298.84331 * 14 13 12 16 16 N 1.31215 * 108.05599 * 0.26320 * 4 3 2 17 17 N 1.34968 * 126.07470 * 180.02562 * 2 1 3 18 18 C 1.46504 * 125.97350 * 359.97438 * 17 2 1 19 19 C 1.50693 * 109.47419 * 89.99884 * 18 17 2 20 20 H 1.08004 * 119.99657 * 0.02562 * 19 18 17 21 21 C 1.37875 * 120.00624 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99292 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00263 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47148 * 90.00460 * 23 21 19 25 25 H 1.48505 * 109.46753 * 210.00040 * 23 21 19 26 26 H 1.48496 * 109.47295 * 330.00048 * 23 21 19 27 27 H 1.09002 * 109.47440 * 90.02635 * 1 2 3 28 28 H 1.09003 * 109.46528 * 210.01997 * 1 2 3 29 29 H 1.08999 * 109.47550 * 330.01929 * 1 2 3 30 30 H 1.08005 * 126.06219 * 359.97438 * 3 2 1 31 31 H 0.97005 * 119.99971 * 179.97438 * 5 4 3 32 32 H 1.08999 * 109.47215 * 59.99896 * 9 8 6 33 33 H 1.09002 * 109.47117 * 179.97438 * 9 8 6 34 34 H 0.96694 * 114.00295 * 180.02562 * 10 9 8 35 35 H 1.09004 * 109.52547 * 57.01757 * 11 8 6 36 36 H 1.09001 * 109.52768 * 177.21018 * 11 8 6 37 37 H 1.08996 * 109.46356 * 182.44743 * 12 11 8 38 38 H 1.09005 * 109.46755 * 62.43963 * 12 11 8 39 39 H 1.09005 * 109.47964 * 178.85648 * 14 13 12 40 40 H 1.09009 * 109.48796 * 58.83494 * 14 13 12 41 41 H 1.08994 * 109.51993 * 297.70195 * 15 14 13 42 42 H 1.08997 * 109.57535 * 177.54498 * 15 14 13 43 43 H 1.09003 * 109.47119 * 210.00480 * 18 17 2 44 44 H 1.09006 * 109.46712 * 330.00117 * 18 17 2 45 45 H 0.97005 * 119.99479 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6370 0.6546 -0.0006 5 7 4.7734 1.4751 -0.0003 6 6 4.6366 2.8159 0.0012 7 8 3.5300 3.3125 0.0018 8 6 5.8584 3.6980 0.0009 9 6 6.6943 3.4143 -1.2488 10 8 7.0976 2.0433 -1.2510 11 6 6.6952 3.4146 1.2522 12 6 5.8752 3.7770 2.4955 13 8 5.4818 5.1489 2.4232 14 6 4.6589 5.4614 1.2974 15 6 5.4290 5.1683 0.0071 16 7 3.6337 -0.6575 -0.0067 17 7 2.3017 -1.0909 -0.0005 18 6 1.8502 -2.4846 -0.0006 19 6 1.6948 -2.9622 -1.4213 20 1 1.9112 -2.2945 -2.2422 21 6 1.2774 -4.2519 -1.6734 22 7 1.0144 -5.0650 -0.6738 23 14 1.0855 -4.8441 -3.4346 24 1 2.3666 -5.4322 -3.9015 25 1 0.0166 -5.8732 -3.4971 26 1 0.7206 -3.6979 -4.3053 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3632 -0.8899 0.5142 29 1 -0.3634 0.8901 0.5135 30 1 1.9718 2.1211 -0.0004 31 1 5.6584 1.0779 -0.0004 32 1 6.0988 3.6192 -2.1384 33 1 7.5774 4.0532 -1.2479 34 1 7.6326 1.7919 -2.0162 35 1 6.9588 2.3574 1.2826 36 1 7.6034 4.0168 1.2272 37 1 6.4801 3.6189 3.3883 38 1 4.9873 3.1463 2.5416 39 1 4.3877 6.5167 1.3272 40 1 3.7551 4.8528 1.3276 41 1 6.3116 5.8058 -0.0431 42 1 4.7886 5.3644 -0.8528 43 1 2.5850 -3.1046 0.5130 44 1 0.8916 -2.5559 0.5136 45 1 0.7211 -5.9725 -0.8512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362608424.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:05 Heat of formation + Delta-G solvation = -82.197618 kcal Electronic energy + Delta-G solvation = -28456.098451 eV Core-core repulsion = 24474.306501 eV Total energy + Delta-G solvation = -3981.791950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52937 -41.67824 -39.24015 -37.90220 -36.34264 -35.29587 -34.84972 -33.03723 -32.63502 -31.98388 -28.82840 -28.36115 -27.88159 -25.57913 -24.63956 -24.35627 -23.33804 -21.69611 -21.20894 -19.97661 -18.81052 -18.40890 -17.74094 -17.67322 -17.21766 -16.97283 -16.93992 -16.54359 -16.20231 -15.96448 -15.69934 -15.54181 -14.93693 -14.75340 -14.46757 -14.34966 -14.12212 -13.81263 -13.72035 -13.56335 -13.32844 -13.27286 -13.16127 -12.87417 -12.69205 -12.62387 -12.30301 -12.24947 -12.09799 -11.76222 -11.57290 -11.48900 -11.28650 -11.03478 -10.75750 -10.71821 -10.36229 -9.58676 -9.13684 -8.33954 -6.51911 0.88103 1.32077 1.37082 1.38881 1.41562 1.50379 2.19133 2.27797 2.39671 2.91058 2.95611 3.02826 3.47318 3.52693 3.73725 3.87012 3.95140 4.10701 4.21259 4.23073 4.41641 4.43977 4.48129 4.61063 4.63012 4.68621 4.69795 4.78471 4.79331 4.86005 4.87402 4.95010 4.99726 5.03349 5.05062 5.09785 5.20746 5.27527 5.52285 5.79469 5.94746 6.20504 6.24605 6.30194 6.60330 6.83678 6.99829 7.16235 7.19030 8.72093 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.003106 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.837103 B = 9011.507211 C = 9561.064207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.086 3.914 3 C -0.301 4.301 4 C 0.270 3.730 5 N -0.612 5.612 6 C 0.526 3.474 7 O -0.544 6.544 8 C -0.070 4.070 9 C 0.091 3.909 10 O -0.591 6.591 11 C -0.133 4.133 12 C 0.052 3.948 13 O -0.392 6.392 14 C 0.045 3.955 15 C -0.122 4.122 16 N -0.359 5.359 17 N -0.342 5.342 18 C 0.275 3.725 19 C -0.553 4.553 20 H 0.049 0.951 21 C 0.023 3.977 22 N -0.918 5.918 23 Si 0.972 3.028 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.270 1.270 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.166 0.834 31 H 0.425 0.575 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.406 0.594 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.021 0.979 39 H 0.113 0.887 40 H 0.048 0.952 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.023 0.977 44 H 0.052 0.948 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.890 20.885 0.506 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.044 4.044 3 C -0.332 4.332 4 C 0.016 3.984 5 N -0.263 5.263 6 C 0.314 3.686 7 O -0.420 6.420 8 C -0.074 4.074 9 C 0.013 3.987 10 O -0.401 6.401 11 C -0.171 4.171 12 C -0.025 4.025 13 O -0.311 6.311 14 C -0.031 4.031 15 C -0.160 4.160 16 N -0.190 5.190 17 N -0.124 5.124 18 C 0.156 3.844 19 C -0.591 4.591 20 H 0.067 0.933 21 C -0.178 4.178 22 N -0.556 5.556 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.194 1.194 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.183 0.817 31 H 0.265 0.735 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.258 0.742 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.040 0.960 39 H 0.131 0.869 40 H 0.067 0.933 41 H 0.130 0.870 42 H 0.103 0.897 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.484 20.026 1.241 23.119 hybrid contribution -0.114 -0.721 -1.411 1.589 sum 11.370 19.305 -0.170 22.406 Atomic orbital electron populations 1.20463 0.85320 1.04197 1.03933 1.21757 0.96660 0.86521 0.99495 1.21423 0.89943 0.99844 1.21948 1.19461 0.89015 0.89334 1.00569 1.42848 1.06962 1.05167 1.71309 1.21256 0.91809 0.81163 0.74379 1.90567 1.28270 1.74049 1.49126 1.21089 0.91941 0.95428 0.98906 1.22174 0.98272 0.83962 0.94310 1.86236 1.75271 1.26840 1.51761 1.22253 0.99186 1.04040 0.91590 1.22734 0.97528 0.82648 0.99583 1.87886 1.69890 1.26418 1.46928 1.22877 0.93008 1.02425 0.84781 1.22005 1.02665 0.91824 0.99534 1.77195 0.99954 1.10123 1.31695 1.48796 1.01784 1.07498 1.54354 1.19248 0.94863 0.72409 0.97861 1.21421 1.47628 0.98418 0.91681 0.93320 1.25745 0.93882 0.95880 1.02327 1.70007 1.45055 1.07515 1.33028 0.85338 0.78308 0.78189 0.78550 1.19935 1.19438 1.19421 0.89805 0.91254 0.87617 0.81660 0.73487 0.92981 0.88414 0.74196 0.89735 0.86944 0.86618 0.96021 0.86923 0.93350 0.87028 0.89743 0.95854 0.93027 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.79 10.11 71.23 0.72 -2.07 16 2 C 0.09 3.76 6.92 41.38 0.29 4.05 16 3 C -0.30 -12.76 9.52 22.10 0.21 -12.55 16 4 C 0.27 11.56 8.11 133.32 1.08 12.65 16 5 N -0.61 -20.26 4.97 -307.52 -1.53 -21.79 16 6 C 0.53 15.20 5.11 87.66 0.45 15.65 16 7 O -0.54 -18.59 10.98 -3.05 -0.03 -18.62 16 8 C -0.07 -1.30 0.53 -52.81 -0.03 -1.32 16 9 C 0.09 1.18 5.91 71.98 0.43 1.61 16 10 O -0.59 -8.79 10.57 -148.98 -1.58 -10.37 16 11 C -0.13 -2.18 4.68 30.75 0.14 -2.04 16 12 C 0.05 1.06 6.62 72.08 0.48 1.54 16 13 O -0.39 -8.72 10.77 -148.98 -1.60 -10.33 16 14 C 0.05 0.93 6.55 72.01 0.47 1.40 16 15 C -0.12 -1.95 4.56 30.68 0.14 -1.81 16 16 N -0.36 -17.60 12.59 -54.45 -0.69 -18.29 16 17 N -0.34 -17.09 3.59 -338.44 -1.22 -18.30 16 18 C 0.28 14.88 5.99 85.63 0.51 15.39 16 19 C -0.55 -31.51 9.39 25.60 0.24 -31.27 16 20 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 21 C 0.02 1.25 5.46 84.65 0.46 1.71 16 22 N -0.92 -52.27 13.29 21.45 0.28 -51.99 16 23 Si 0.97 43.32 29.54 68.60 2.03 45.34 16 24 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 26 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 27 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 28 H 0.07 2.43 7.07 -2.39 -0.02 2.41 16 29 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.17 6.71 5.92 -2.91 -0.02 6.69 16 31 H 0.42 12.68 6.19 -92.70 -0.57 12.10 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.41 2.75 9.12 -74.06 -0.68 2.07 16 35 H 0.08 1.46 7.16 -2.38 -0.02 1.45 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.02 0.57 7.38 -2.38 -0.02 0.55 16 39 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 40 H 0.05 1.30 5.81 -2.38 -0.01 1.29 16 41 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.38 8.02 -2.39 -0.02 1.36 16 43 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 2.76 7.04 -2.38 -0.02 2.74 16 45 H 0.27 14.52 8.31 -92.70 -0.77 13.75 16 Total: -1.00 -73.91 360.19 1.04 -72.87 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.22 Total: 28.54 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.59 Total: 2.93 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -3.15 Total: -110.37 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -3.21 Total: -39.32 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -73.91 1.04 -72.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362608424.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.327 kcal (2) G-P(sol) polarization free energy of solvation -73.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds