Wall clock time and date at job start Tue Mar 31 2020 13:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00357 * 2 1 4 4 O 1.21282 * 119.99881 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00618 * 179.97438 * 3 2 1 6 6 C 1.50692 * 109.47321 * 180.02562 * 5 3 2 7 7 N 1.29028 * 124.91748 * 90.28267 * 6 5 3 8 8 C 1.31783 * 117.12188 * 180.22536 * 7 6 5 9 9 C 1.50698 * 122.74762 * 179.75520 * 8 7 6 10 10 N 1.46903 * 109.46882 * 274.70825 * 9 8 7 11 11 C 1.46847 * 110.99897 * 45.78709 * 10 9 8 12 12 C 1.53040 * 109.52054 * 185.83972 * 11 10 9 13 13 C 1.53118 * 109.27962 * 300.82071 * 12 11 10 14 14 C 1.50701 * 109.57327 * 177.58915 * 13 12 11 15 15 H 1.08002 * 120.00412 * 245.71277 * 14 13 12 16 16 C 1.37874 * 119.99916 * 65.72174 * 14 13 12 17 17 N 1.31519 * 120.00153 * 9.54901 * 16 14 13 18 18 Si 1.86795 * 120.00208 * 189.55085 * 16 14 13 19 19 H 1.48506 * 109.47243 * 94.98757 * 18 16 14 20 20 H 1.48504 * 109.47481 * 214.98634 * 18 16 14 21 21 H 1.48497 * 109.47416 * 334.98930 * 18 16 14 22 22 C 1.53118 * 109.15839 * 57.65936 * 13 12 11 23 23 C 1.46843 * 111.00215 * 170.00341 * 10 9 8 24 24 C 1.33643 * 114.50081 * 359.48114 * 8 7 6 25 25 S 1.70982 * 124.91553 * 269.97214 * 6 5 3 26 26 H 1.08999 * 109.47185 * 300.00415 * 1 2 3 27 27 H 1.08999 * 109.46613 * 60.00391 * 1 2 3 28 28 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 29 29 H 0.97007 * 120.00118 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46746 * 59.99774 * 5 3 2 31 31 H 1.08997 * 109.46998 * 300.00708 * 5 3 2 32 32 H 1.09002 * 109.47327 * 154.70828 * 9 8 7 33 33 H 1.08999 * 109.47257 * 34.70530 * 9 8 7 34 34 H 1.08998 * 109.46756 * 305.85726 * 11 10 9 35 35 H 1.09002 * 109.46066 * 65.83207 * 11 10 9 36 36 H 1.09001 * 109.50231 * 180.88509 * 12 11 10 37 37 H 1.08999 * 109.50543 * 60.76566 * 12 11 10 38 38 H 1.09000 * 109.52622 * 297.75139 * 13 12 11 39 39 H 0.97000 * 120.00107 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.50511 * 182.40501 * 22 13 12 41 41 H 1.09002 * 109.53859 * 62.30231 * 22 13 12 42 42 H 1.08998 * 109.45930 * 294.17519 * 23 10 9 43 43 H 1.08998 * 109.46597 * 54.15356 * 23 10 9 44 44 H 1.08000 * 126.03168 * 180.26762 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1672 0.0006 6 6 4.1483 2.5879 0.0011 7 7 4.3990 3.2823 1.0593 8 6 4.8290 4.5151 0.8811 9 6 5.1548 5.4385 2.0266 10 7 3.9291 6.1120 2.4763 11 6 2.8212 5.1570 2.6062 12 6 1.5309 5.9120 2.9336 13 6 1.7168 6.6876 4.2406 14 6 0.4705 7.4806 4.5387 15 1 0.5023 8.5601 4.5302 16 6 -0.7105 6.8281 4.8224 17 7 -0.7125 5.5276 5.0185 18 14 -2.3076 7.7910 4.9284 19 1 -3.0053 7.7382 3.6185 20 1 -3.1759 7.1959 5.9760 21 1 -2.0115 9.2043 5.2749 22 6 2.9067 7.6402 4.0949 23 6 4.1571 6.8351 3.7339 24 6 4.9581 4.8774 -0.3988 25 16 4.4757 3.5107 -1.4006 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9501 -0.8401 0.0004 30 1 4.0096 0.6531 -0.8891 31 1 4.0089 0.6535 0.8907 32 1 5.8792 6.1837 1.6979 33 1 5.5753 4.8615 2.8501 34 1 2.6970 4.6151 1.6687 35 1 3.0421 4.4513 3.4070 36 1 0.7119 5.2015 3.0454 37 1 1.3019 6.6082 2.1267 38 1 1.9073 5.9887 5.0551 39 1 -1.5434 5.0684 5.2178 40 1 3.0707 8.1644 5.0364 41 1 2.6998 8.3640 3.3066 42 1 4.3718 6.1215 4.5293 43 1 5.0031 7.5122 3.6153 44 1 5.2982 5.8383 -0.7559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363779538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:44 Heat of formation + Delta-G solvation = 11.099329 kcal Electronic energy + Delta-G solvation = -25494.648079 eV Core-core repulsion = 21959.654660 eV Total energy + Delta-G solvation = -3534.993420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29637 -39.44925 -37.72312 -34.72868 -34.03455 -32.62339 -31.16471 -29.67327 -29.20825 -26.79358 -26.65248 -24.68807 -23.03468 -21.91242 -21.24219 -20.52706 -19.60225 -18.43922 -17.77248 -17.38942 -16.27229 -16.14728 -15.60270 -15.46793 -15.02581 -14.42641 -14.16148 -14.13544 -13.84559 -13.64037 -13.25614 -12.94126 -12.81871 -12.76088 -12.39890 -12.21954 -12.16550 -12.05644 -11.59046 -11.30971 -11.08555 -10.90478 -10.66437 -10.33301 -10.10227 -10.07647 -9.93348 -9.57580 -9.33323 -9.28164 -9.23969 -8.80590 -8.66021 -8.56470 -8.16989 -7.62334 -5.88081 -3.88667 0.76336 1.42149 1.77906 2.52808 2.73122 3.16354 3.39426 3.46063 3.49176 3.94715 4.53034 4.55684 4.67297 4.78777 5.02641 5.09171 5.17424 5.27083 5.39977 5.41023 5.44346 5.69709 5.73169 5.83439 5.91969 6.06826 6.19986 6.21457 6.26534 6.42782 6.50913 6.76768 6.82875 6.98713 7.18188 7.25552 7.26587 7.54737 7.72266 7.79962 7.85441 7.96116 8.09067 8.16811 8.20338 8.60709 9.15234 9.73632 11.21161 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.004233 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.689633 B = 6613.056547 C = 8613.298911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.737 5.737 3 C 0.511 3.489 4 O -0.510 6.510 5 C -0.063 4.063 6 C 0.061 3.939 7 N -0.450 5.450 8 C 0.082 3.918 9 C 0.126 3.874 10 N -0.530 5.530 11 C 0.065 3.935 12 C -0.096 4.096 13 C 0.046 3.954 14 C -0.512 4.512 15 H 0.054 0.946 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.884 3.116 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.104 4.104 23 C 0.060 3.940 24 C -0.236 4.236 25 S 0.115 5.885 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.401 0.599 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.063 0.937 35 H 0.023 0.977 36 H 0.072 0.928 37 H 0.041 0.959 38 H 0.027 0.973 39 H 0.258 0.742 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.058 0.942 44 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.454 -13.222 -13.857 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.390 5.390 3 C 0.295 3.705 4 O -0.383 6.383 5 C -0.106 4.106 6 C -0.219 4.219 7 N -0.164 5.164 8 C -0.049 4.049 9 C -0.004 4.004 10 N -0.256 5.256 11 C -0.062 4.062 12 C -0.134 4.134 13 C 0.027 3.973 14 C -0.550 4.550 15 H 0.072 0.928 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.712 3.288 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.199 1.199 22 C -0.142 4.142 23 C -0.067 4.067 24 C -0.376 4.376 25 S 0.370 5.630 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.234 0.766 30 H 0.131 0.869 31 H 0.141 0.859 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.076 0.924 44 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 11.599 -12.663 -14.721 22.618 hybrid contribution -0.443 -0.064 1.347 1.419 sum 11.155 -12.727 -13.374 21.570 Atomic orbital electron populations 1.21559 0.79125 1.02116 1.02874 1.45693 1.07968 1.08309 1.77060 1.20331 0.89317 0.84127 0.76769 1.90848 1.69828 1.30890 1.46747 1.20170 0.93056 0.91068 1.06324 1.25926 1.04283 1.00158 0.91487 1.66060 1.12907 1.06106 1.31337 1.20063 0.99780 0.90691 0.94365 1.20655 0.93707 0.93352 0.92724 1.62223 1.04049 1.28069 1.31227 1.22226 0.91729 0.92861 0.99424 1.21563 0.94179 0.98934 0.98742 1.18706 0.91788 0.93383 0.93381 1.21181 0.94019 0.92816 1.46971 0.92782 1.24962 0.98913 0.94841 0.95095 1.69987 1.26616 1.08051 1.48055 0.86704 0.84138 0.80292 0.77617 1.20778 1.21454 1.19934 1.21659 0.94533 0.98567 0.99463 1.22139 0.99087 0.96537 0.88950 1.26778 1.11595 1.03718 0.95519 1.83667 1.60362 1.06316 1.12697 0.91738 0.92168 0.90691 0.76611 0.86879 0.85894 0.89715 0.93641 0.91901 0.95895 0.90972 0.93984 0.95506 0.93240 0.93053 0.92596 0.95623 0.92376 0.80458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 10.70 59.85 0.64 1.43 16 2 N -0.74 -6.54 5.71 -67.08 -0.38 -6.92 16 3 C 0.51 6.49 7.82 -10.99 -0.09 6.40 16 4 O -0.51 -9.45 16.03 5.56 0.09 -9.37 16 5 C -0.06 -0.61 6.28 -29.04 -0.18 -0.79 16 6 C 0.06 0.83 5.88 -13.46 -0.08 0.75 16 7 N -0.45 -7.46 9.11 -8.06 -0.07 -7.53 16 8 C 0.08 1.32 4.78 -84.22 -0.40 0.92 16 9 C 0.13 2.03 5.72 -4.98 -0.03 2.00 16 10 N -0.53 -10.45 4.80 -236.11 -1.13 -11.58 16 11 C 0.06 1.49 4.81 -3.83 -0.02 1.47 16 12 C -0.10 -2.53 5.19 -26.65 -0.14 -2.66 16 13 C 0.05 1.23 2.03 -91.65 -0.19 1.05 16 14 C -0.51 -14.91 8.48 -34.44 -0.29 -15.20 16 15 H 0.05 1.55 7.77 -52.49 -0.41 1.14 16 16 C 0.06 1.85 5.23 -17.82 -0.09 1.76 16 17 N -0.89 -27.11 12.20 55.43 0.68 -26.44 16 18 Si 0.88 22.39 29.55 -169.99 -5.02 17.37 16 19 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 21 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.10 -2.34 5.32 -26.65 -0.14 -2.48 16 23 C 0.06 1.17 5.42 -3.84 -0.02 1.14 16 24 C -0.24 -3.23 11.11 29.12 0.32 -2.91 16 25 S 0.11 1.39 23.18 -107.50 -2.49 -1.10 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.40 1.90 8.83 -40.82 -0.36 1.54 16 30 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 33 H 0.05 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.06 1.49 5.78 -51.93 -0.30 1.19 16 35 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 2.13 7.00 -51.93 -0.36 1.76 16 37 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 44 H 0.18 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -36.65 370.24 -10.36 -47.02 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.90 Total: 0.08 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -0.70 Total: -7.11 kcal Atomic # 7 Polarization: -51.55 SS G_CDS: -0.91 Total: -52.47 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -2.49 Total: -1.10 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.65 -10.36 -47.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363779538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.115 kcal (2) G-P(sol) polarization free energy of solvation -36.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds