Wall clock time and date at job start Tue Mar 31 2020 13:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34773 * 120.00357 * 2 1 4 4 O 1.21282 * 119.99881 * 359.97438 * 3 2 1 5 5 C 1.50703 * 120.00618 * 179.97438 * 3 2 1 6 6 C 1.50692 * 109.47321 * 180.02562 * 5 3 2 7 7 N 1.29028 * 124.91748 * 90.28267 * 6 5 3 8 8 C 1.31783 * 117.12188 * 180.22536 * 7 6 5 9 9 C 1.50698 * 122.74762 * 179.75520 * 8 7 6 10 10 N 1.46903 * 109.46882 * 274.70825 * 9 8 7 11 11 C 1.46847 * 110.99897 * 45.78709 * 10 9 8 12 12 C 1.53040 * 109.52054 * 185.83972 * 11 10 9 13 13 C 1.53118 * 109.27962 * 300.82071 * 12 11 10 14 14 C 1.50701 * 109.57327 * 177.58915 * 13 12 11 15 15 H 1.08002 * 120.00412 * 245.71277 * 14 13 12 16 16 C 1.37874 * 119.99916 * 65.72174 * 14 13 12 17 17 N 1.31519 * 120.00153 * 9.54901 * 16 14 13 18 18 Si 1.86795 * 120.00208 * 189.55085 * 16 14 13 19 19 H 1.48506 * 109.47243 * 94.98757 * 18 16 14 20 20 H 1.48504 * 109.47481 * 214.98634 * 18 16 14 21 21 H 1.48497 * 109.47416 * 334.98930 * 18 16 14 22 22 C 1.53118 * 109.15839 * 57.65936 * 13 12 11 23 23 C 1.46843 * 111.00215 * 170.00341 * 10 9 8 24 24 C 1.33643 * 114.50081 * 359.48114 * 8 7 6 25 25 S 1.70982 * 124.91553 * 269.97214 * 6 5 3 26 26 H 1.08999 * 109.47185 * 300.00415 * 1 2 3 27 27 H 1.08999 * 109.46613 * 60.00391 * 1 2 3 28 28 H 1.09000 * 109.47113 * 180.02562 * 1 2 3 29 29 H 0.97007 * 120.00118 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46746 * 59.99774 * 5 3 2 31 31 H 1.08997 * 109.46998 * 300.00708 * 5 3 2 32 32 H 1.09002 * 109.47327 * 154.70828 * 9 8 7 33 33 H 1.08999 * 109.47257 * 34.70530 * 9 8 7 34 34 H 1.08998 * 109.46756 * 305.85726 * 11 10 9 35 35 H 1.09002 * 109.46066 * 65.83207 * 11 10 9 36 36 H 1.09001 * 109.50231 * 180.88509 * 12 11 10 37 37 H 1.08999 * 109.50543 * 60.76566 * 12 11 10 38 38 H 1.09000 * 109.52622 * 297.75139 * 13 12 11 39 39 H 0.97000 * 120.00107 * 180.02562 * 17 16 14 40 40 H 1.08997 * 109.50511 * 182.40501 * 22 13 12 41 41 H 1.09002 * 109.53859 * 62.30231 * 22 13 12 42 42 H 1.08998 * 109.45930 * 294.17519 * 23 10 9 43 43 H 1.08998 * 109.46597 * 54.15356 * 23 10 9 44 44 H 1.08000 * 126.03168 * 180.26762 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1672 0.0006 6 6 4.1483 2.5879 0.0011 7 7 4.3990 3.2823 1.0593 8 6 4.8290 4.5151 0.8811 9 6 5.1548 5.4385 2.0266 10 7 3.9291 6.1120 2.4763 11 6 2.8212 5.1570 2.6062 12 6 1.5309 5.9120 2.9336 13 6 1.7168 6.6876 4.2406 14 6 0.4705 7.4806 4.5387 15 1 0.5023 8.5601 4.5302 16 6 -0.7105 6.8281 4.8224 17 7 -0.7125 5.5276 5.0185 18 14 -2.3076 7.7910 4.9284 19 1 -3.0053 7.7382 3.6185 20 1 -3.1759 7.1959 5.9760 21 1 -2.0115 9.2043 5.2749 22 6 2.9067 7.6402 4.0949 23 6 4.1571 6.8351 3.7339 24 6 4.9581 4.8774 -0.3988 25 16 4.4757 3.5107 -1.4006 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9501 -0.8401 0.0004 30 1 4.0096 0.6531 -0.8891 31 1 4.0089 0.6535 0.8907 32 1 5.8792 6.1837 1.6979 33 1 5.5753 4.8615 2.8501 34 1 2.6970 4.6151 1.6687 35 1 3.0421 4.4513 3.4070 36 1 0.7119 5.2015 3.0454 37 1 1.3019 6.6082 2.1267 38 1 1.9073 5.9887 5.0551 39 1 -1.5434 5.0684 5.2178 40 1 3.0707 8.1644 5.0364 41 1 2.6998 8.3640 3.3066 42 1 4.3718 6.1215 4.5293 43 1 5.0031 7.5122 3.6153 44 1 5.2982 5.8383 -0.7559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363779538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:43 Heat of formation + Delta-G solvation = -17.058366 kcal Electronic energy + Delta-G solvation = -25495.869089 eV Core-core repulsion = 21959.654660 eV Total energy + Delta-G solvation = -3536.214429 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38874 -40.53784 -39.36400 -35.87546 -35.64972 -34.02797 -32.86044 -31.54247 -30.37564 -28.40205 -27.51307 -26.41837 -24.42317 -23.68550 -22.85959 -21.54956 -20.68809 -20.35677 -18.79860 -18.45805 -18.34049 -17.13612 -17.08350 -16.52495 -16.42578 -16.19446 -15.53003 -15.33234 -15.23517 -14.82162 -14.61303 -14.50319 -14.29347 -14.02744 -13.90001 -13.79543 -13.22862 -13.09826 -13.01731 -12.91886 -12.88218 -12.62161 -12.53177 -12.13414 -12.03399 -11.95021 -11.39933 -11.16715 -10.78451 -10.73473 -10.59995 -10.45841 -10.25825 -10.17493 -9.74662 -9.20717 -8.14444 -6.23626 -0.25085 0.46370 0.75854 1.36314 1.38907 1.49035 1.57161 1.66402 2.32704 2.41266 3.01724 3.15292 3.17977 3.66506 3.94947 4.08850 4.19423 4.24959 4.30099 4.33376 4.40664 4.44328 4.48102 4.54316 4.58570 4.64966 4.75036 4.82077 4.86191 4.93780 4.95890 5.05552 5.15683 5.19304 5.26968 5.39526 5.47266 5.58738 5.88526 5.93817 6.15391 6.26345 6.36027 6.51388 6.82643 6.89202 7.24991 7.43141 8.94586 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010797 B = 0.004233 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.689633 B = 6613.056547 C = 8613.298911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.504 3.496 4 O -0.580 6.580 5 C -0.060 4.060 6 C 0.044 3.956 7 N -0.491 5.491 8 C 0.051 3.949 9 C 0.128 3.872 10 N -0.533 5.533 11 C 0.092 3.908 12 C -0.085 4.085 13 C 0.044 3.956 14 C -0.533 4.533 15 H 0.056 0.944 16 C 0.010 3.990 17 N -0.923 5.923 18 Si 0.953 3.047 19 H -0.279 1.279 20 H -0.282 1.282 21 H -0.261 1.261 22 C -0.097 4.097 23 C 0.065 3.935 24 C -0.240 4.240 25 S 0.164 5.836 26 H 0.031 0.969 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.424 0.576 30 H 0.161 0.839 31 H 0.141 0.859 32 H 0.121 0.879 33 H 0.042 0.958 34 H 0.055 0.945 35 H -0.001 1.001 36 H 0.028 0.972 37 H 0.030 0.970 38 H -0.012 1.012 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.019 0.981 43 H 0.103 0.897 44 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.980 -13.324 -15.458 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.290 3.710 4 O -0.459 6.459 5 C -0.103 4.103 6 C -0.235 4.235 7 N -0.206 5.206 8 C -0.080 4.080 9 C -0.002 4.002 10 N -0.258 5.258 11 C -0.036 4.036 12 C -0.123 4.123 13 C 0.026 3.974 14 C -0.571 4.571 15 H 0.074 0.926 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.779 3.221 19 H -0.205 1.205 20 H -0.207 1.207 21 H -0.185 1.185 22 C -0.135 4.135 23 C -0.062 4.062 24 C -0.380 4.380 25 S 0.419 5.581 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.136 0.864 29 H 0.262 0.738 30 H 0.179 0.821 31 H 0.158 0.842 32 H 0.139 0.861 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.017 0.983 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.007 0.993 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.121 0.879 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 13.160 -12.823 -16.330 24.583 hybrid contribution -0.924 -0.126 1.780 2.010 sum 12.236 -12.949 -14.550 23.002 Atomic orbital electron populations 1.21620 0.79263 1.04255 1.00827 1.45589 1.08033 1.08505 1.74990 1.20926 0.90618 0.83944 0.75545 1.90823 1.71355 1.33414 1.50333 1.20397 0.90690 0.89734 1.09448 1.26562 1.03526 1.01628 0.91741 1.66052 1.14429 1.06972 1.33172 1.20123 1.01778 0.91031 0.95113 1.20773 0.92172 0.94266 0.92943 1.62158 1.04927 1.27471 1.31232 1.21743 0.91596 0.92372 0.97929 1.21332 0.94851 0.97839 0.98298 1.18656 0.93409 0.93440 0.91933 1.21581 0.95329 0.93140 1.47063 0.92557 1.25832 1.02580 0.95789 0.94656 1.70136 1.27482 1.09806 1.48802 0.85615 0.79530 0.79333 0.77672 1.20510 1.20748 1.18543 1.21527 0.94105 0.97845 1.00040 1.22121 0.98746 0.96688 0.88645 1.27134 1.10361 1.05176 0.95282 1.83421 1.58786 1.04834 1.11057 0.94979 0.93131 0.86370 0.73833 0.82117 0.84160 0.86134 0.93982 0.92641 0.98295 0.95285 0.95075 0.99338 0.93233 0.92173 0.92595 0.96291 0.87923 0.78201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.52 10.70 127.77 1.37 2.89 16 2 N -0.72 -11.92 5.71 -484.52 -2.77 -14.68 16 3 C 0.50 12.69 7.82 87.66 0.69 13.38 16 4 O -0.58 -22.49 16.03 -3.03 -0.05 -22.54 16 5 C -0.06 -1.06 6.28 29.10 0.18 -0.88 16 6 C 0.04 1.17 5.88 88.52 0.52 1.69 16 7 N -0.49 -16.27 9.11 -179.40 -1.63 -17.90 16 8 C 0.05 1.58 4.78 41.52 0.20 1.78 16 9 C 0.13 3.94 5.72 85.56 0.49 4.43 16 10 N -0.53 -20.71 4.80 -900.93 -4.32 -25.04 16 11 C 0.09 4.40 4.81 86.33 0.42 4.81 16 12 C -0.08 -4.71 5.19 30.65 0.16 -4.55 16 13 C 0.04 2.47 2.03 -11.46 -0.02 2.45 16 14 C -0.53 -31.92 8.48 25.60 0.22 -31.71 16 15 H 0.06 3.27 7.77 -2.91 -0.02 3.24 16 16 C 0.01 0.58 5.23 84.65 0.44 1.03 16 17 N -0.92 -58.77 12.20 21.45 0.26 -58.51 16 18 Si 0.95 46.82 29.55 68.60 2.03 48.85 16 19 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 20 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 22 C -0.10 -4.35 5.32 30.65 0.16 -4.19 16 23 C 0.07 2.44 5.42 86.33 0.47 2.91 16 24 C -0.24 -6.11 11.11 66.78 0.74 -5.37 16 25 S 0.16 3.66 23.18 -56.49 -1.31 2.35 16 26 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.42 2.93 8.83 -92.70 -0.82 2.11 16 30 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.12 2.82 8.10 -2.39 -0.02 2.80 16 33 H 0.04 1.32 8.08 -2.39 -0.02 1.30 16 34 H 0.06 2.75 5.78 -2.39 -0.01 2.74 16 35 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 36 H 0.03 1.82 7.00 -2.39 -0.02 1.80 16 37 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 38 H -0.01 -0.73 8.09 -2.39 -0.02 -0.75 16 39 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 40 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 41 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.10 2.99 8.12 -2.39 -0.02 2.97 16 44 H 0.20 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -85.97 370.24 -1.58 -87.55 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.18 Total: 11.27 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 6.03 Total: -11.35 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -8.46 Total: -116.13 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.05 Total: -22.54 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.31 Total: 2.35 kcal Total: -85.97 -1.58 -87.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363779538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.495 kcal (2) G-P(sol) polarization free energy of solvation -85.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds