Wall clock time and date at job start Tue Mar 31 2020 14:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53003 * 109.61462 * 234.45377 * 3 2 1 5 5 N 1.46498 * 109.47194 * 59.78308 * 4 3 2 6 6 C 1.34773 * 120.00256 * 180.02562 * 5 4 3 7 7 O 1.21594 * 119.99490 * 359.97438 * 6 5 4 8 8 N 1.34767 * 120.00507 * 179.97438 * 6 5 4 9 9 C 1.47433 * 125.64694 * 359.68970 * 8 6 5 10 10 C 1.55125 * 104.72297 * 155.81876 * 9 8 6 11 11 C 1.55152 * 101.48697 * 37.29616 * 10 9 8 12 12 O 1.42900 * 110.72210 * 82.69639 * 11 10 9 13 13 C 1.50708 * 110.87207 * 205.89974 * 11 10 9 14 14 H 1.07994 * 119.99721 * 355.06148 * 13 11 10 15 15 C 1.37876 * 120.00044 * 175.06349 * 13 11 10 16 16 N 1.31515 * 119.99796 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99934 * 180.02562 * 15 13 11 18 18 H 1.48493 * 109.47491 * 89.99614 * 17 15 13 19 19 H 1.48500 * 109.47214 * 210.00273 * 17 15 13 20 20 H 1.48498 * 109.46920 * 329.99589 * 17 15 13 21 21 C 1.47025 * 125.65299 * 179.97438 * 8 6 5 22 22 C 1.53176 * 109.54198 * 114.23437 * 3 2 1 23 23 C 1.53095 * 109.16286 * 297.10997 * 22 3 2 24 24 O 1.42902 * 109.41528 * 302.39400 * 23 22 3 25 25 C 1.42895 * 114.09785 * 61.15752 * 24 23 22 26 26 C 1.53095 * 109.41568 * 298.83742 * 25 24 23 27 27 H 1.09005 * 109.47158 * 179.77932 * 4 3 2 28 28 H 1.08997 * 109.47030 * 299.77349 * 4 3 2 29 29 H 0.97001 * 119.99830 * 359.97438 * 5 4 3 30 30 H 1.09003 * 110.36354 * 274.74722 * 9 8 6 31 31 H 1.09006 * 110.36401 * 37.06475 * 9 8 6 32 32 H 1.08998 * 111.19109 * 279.18942 * 10 9 8 33 33 H 1.09000 * 110.93503 * 155.28926 * 10 9 8 34 34 H 0.96698 * 113.99845 * 185.02513 * 12 11 10 35 35 H 0.97001 * 119.99513 * 180.02562 * 16 15 13 36 36 H 1.09004 * 109.88066 * 300.43784 * 21 8 6 37 37 H 1.09000 * 109.87928 * 61.44976 * 21 8 6 38 38 H 1.09001 * 109.52789 * 57.01938 * 22 3 2 39 39 H 1.09007 * 109.52321 * 177.20653 * 22 3 2 40 40 H 1.08995 * 109.48092 * 62.37615 * 23 22 3 41 41 H 1.09004 * 109.48253 * 182.40879 * 23 22 3 42 42 H 1.09010 * 109.48185 * 178.86083 * 25 24 23 43 43 H 1.09000 * 109.49144 * 58.83092 * 25 24 23 44 44 H 1.08994 * 109.52897 * 297.70936 * 26 25 24 45 45 H 1.09002 * 109.52549 * 177.51096 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1212 0.8388 1.1727 5 7 2.6306 0.2705 2.4307 6 6 2.9579 0.8476 3.6038 7 8 3.6609 1.8397 3.6180 8 7 2.5062 0.3252 4.7611 9 6 1.6450 -0.8646 4.8884 10 6 1.9224 -1.4010 6.3173 11 6 2.0853 -0.0811 7.1165 12 8 0.8100 0.4445 7.4899 13 6 2.9493 -0.2931 8.3330 14 1 3.2925 -1.2855 8.5852 15 6 3.3016 0.7799 9.1238 16 7 2.8841 1.9885 8.8163 17 14 4.3732 0.5172 10.6311 18 1 5.8028 0.6461 10.2508 19 1 4.0405 1.5363 11.6588 20 1 4.1281 -0.8397 11.1823 21 6 2.7857 0.8508 6.1054 22 6 3.1201 0.5934 -1.3163 23 6 2.6675 -0.2957 -2.4776 24 8 3.1523 -1.6247 -2.2752 25 6 2.6684 -2.2471 -1.0834 26 6 3.1211 -1.4364 0.1339 27 1 4.2112 0.8345 1.1728 28 1 2.7620 1.8629 1.0719 29 1 2.0695 -0.5207 2.4193 30 1 0.5964 -0.5870 4.7818 31 1 1.9181 -1.6120 4.1434 32 1 2.8386 -1.9906 6.3459 33 1 1.0761 -1.9798 6.6872 34 1 0.8522 1.3074 7.9243 35 1 3.1323 2.7435 9.3726 36 1 3.8607 0.8534 6.2863 37 1 2.3922 1.8632 6.1968 38 1 2.7145 1.5968 -1.4463 39 1 4.2090 0.6396 -1.2958 40 1 1.5786 -0.3089 -2.5223 41 1 3.0652 0.0978 -3.4131 42 1 3.0668 -3.2594 -1.0144 43 1 1.5795 -2.2860 -1.1097 44 1 4.2099 -1.4312 0.1837 45 1 2.7161 -1.8846 1.0412 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001372956679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:15 Heat of formation + Delta-G solvation = -120.045224 kcal Electronic energy + Delta-G solvation = -28148.611635 eV Core-core repulsion = 24165.178490 eV Total energy + Delta-G solvation = -3983.433145 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64570 -40.82380 -39.15550 -37.80912 -36.36743 -36.08040 -34.22742 -34.14209 -32.18773 -31.68120 -29.66981 -28.63447 -26.80423 -24.79361 -24.74206 -23.85067 -22.79039 -21.46385 -21.04357 -19.35962 -18.93844 -18.09794 -17.55703 -17.11827 -16.92865 -16.84931 -16.60646 -16.20738 -15.83810 -15.79339 -15.29827 -15.25627 -14.82034 -14.74341 -14.67306 -14.57502 -14.04003 -13.63642 -13.52932 -13.49472 -13.34556 -13.20888 -13.02744 -12.84790 -12.75369 -12.53756 -12.34215 -12.31642 -12.28565 -12.09864 -11.74917 -11.39836 -11.32841 -11.16711 -10.65288 -10.56499 -10.31077 -10.28333 -9.43356 -8.25299 -6.41178 1.42076 1.44357 1.51001 1.54265 1.57382 1.66980 2.12204 2.38762 2.61700 2.91441 3.00932 3.01523 3.41930 3.52393 3.62949 3.78322 3.94312 4.04019 4.15816 4.23248 4.33863 4.39205 4.43378 4.54033 4.56201 4.64136 4.68212 4.72449 4.76925 4.82486 5.03965 5.05284 5.08571 5.11793 5.12844 5.21145 5.34414 5.39190 5.48998 5.74981 5.99452 6.11884 6.21586 6.38041 6.65727 6.99185 7.27508 7.35448 7.51505 8.80805 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026075 B = 0.002758 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.558252 B =10148.685652 C =10271.478009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.226 3.774 3 C 0.036 3.964 4 C 0.151 3.849 5 N -0.734 5.734 6 C 0.714 3.286 7 O -0.636 6.636 8 N -0.635 5.635 9 C 0.107 3.893 10 C -0.109 4.109 11 C 0.231 3.769 12 O -0.589 6.589 13 C -0.555 4.555 14 H 0.068 0.932 15 C 0.025 3.975 16 N -0.916 5.916 17 Si 0.964 3.036 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.265 1.265 21 C 0.143 3.857 22 C -0.138 4.138 23 C 0.056 3.944 24 O -0.389 6.389 25 C 0.057 3.943 26 C -0.143 4.143 27 H 0.104 0.896 28 H 0.067 0.933 29 H 0.403 0.597 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.375 0.625 35 H 0.269 0.731 36 H 0.034 0.966 37 H 0.026 0.974 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.036 0.964 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.038 0.962 44 H 0.118 0.882 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.169 -8.149 -21.216 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.139 5.139 2 C -0.092 4.092 3 C 0.032 3.968 4 C 0.026 3.974 5 N -0.392 5.392 6 C 0.416 3.584 7 O -0.518 6.518 8 N -0.372 5.372 9 C -0.015 4.015 10 C -0.147 4.147 11 C 0.191 3.809 12 O -0.397 6.397 13 C -0.594 4.594 14 H 0.087 0.913 15 C -0.176 4.176 16 N -0.555 5.555 17 Si 0.789 3.211 18 H -0.203 1.203 19 H -0.209 1.209 20 H -0.189 1.189 21 C 0.019 3.981 22 C -0.177 4.177 23 C -0.021 4.021 24 O -0.307 6.307 25 C -0.020 4.020 26 C -0.182 4.182 27 H 0.122 0.878 28 H 0.085 0.915 29 H 0.239 0.761 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.224 0.776 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.044 0.956 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.054 0.946 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.056 0.944 44 H 0.136 0.864 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.880 -7.868 -21.631 23.034 hybrid contribution 0.373 0.925 1.679 1.953 sum 1.252 -6.943 -19.952 21.163 Atomic orbital electron populations 1.81282 1.14037 1.09300 1.09315 1.29387 0.95178 0.92356 0.92284 1.18828 0.80230 0.99586 0.98143 1.21379 1.00945 0.96219 0.78870 1.44973 1.56878 1.33401 1.03926 1.15625 0.80148 0.82300 0.80350 1.90869 1.45054 1.29103 1.86759 1.47901 1.52751 1.31461 1.05086 1.22415 0.93915 0.86498 0.98677 1.22751 1.02808 0.96327 0.92803 1.19753 0.81168 0.89423 0.90555 1.86101 1.32076 1.40377 1.81137 1.21818 1.32250 0.94771 1.10516 0.91346 1.25826 0.96495 0.94776 1.00513 1.69816 1.46128 0.99551 1.40008 0.85465 0.78680 0.78195 0.78761 1.20311 1.20930 1.18944 1.22337 0.98790 0.97172 0.79806 1.22348 1.04905 1.00446 0.90006 1.22743 0.97857 0.82188 0.99297 1.87964 1.71641 1.28701 1.42428 1.22718 0.97883 0.97822 0.83567 1.22416 1.04685 0.90935 1.00135 0.87829 0.91510 0.76075 0.92010 0.87989 0.89291 0.89422 0.77631 0.92149 0.94763 0.95571 0.88432 0.85955 0.94562 0.85837 0.86177 0.94404 0.86415 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -11.85 18.54 20.01 0.37 -11.48 16 2 C 0.23 4.37 10.95 89.44 0.98 5.35 16 3 C 0.04 0.47 0.50 -53.87 -0.03 0.45 16 4 C 0.15 2.82 4.55 86.38 0.39 3.21 16 5 N -0.73 -18.53 4.99 -478.54 -2.39 -20.92 16 6 C 0.71 26.99 8.49 179.06 1.52 28.51 16 7 O -0.64 -29.49 16.67 -4.01 -0.07 -29.55 16 8 N -0.64 -25.32 3.32 -829.29 -2.76 -28.08 16 9 C 0.11 3.42 6.58 86.93 0.57 3.99 16 10 C -0.11 -4.03 6.24 32.06 0.20 -3.83 16 11 C 0.23 11.09 0.85 -10.35 -0.01 11.08 16 12 O -0.59 -29.87 13.07 -148.98 -1.95 -31.82 16 13 C -0.56 -28.79 8.13 25.60 0.21 -28.58 16 14 H 0.07 3.43 7.78 -2.91 -0.02 3.41 16 15 C 0.02 1.30 5.28 84.65 0.45 1.74 16 16 N -0.92 -49.92 10.96 21.45 0.24 -49.69 16 17 Si 0.96 41.79 29.54 68.60 2.03 43.82 16 18 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 21 C 0.14 7.05 5.23 86.73 0.45 7.51 16 22 C -0.14 -1.18 4.90 30.69 0.15 -1.03 16 23 C 0.06 0.56 6.61 72.01 0.48 1.04 16 24 O -0.39 -5.13 10.77 -148.98 -1.60 -6.74 16 25 C 0.06 0.62 6.61 72.01 0.48 1.09 16 26 C -0.14 -1.43 4.68 30.69 0.14 -1.29 16 27 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.40 8.48 5.40 -92.71 -0.50 7.98 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.10 2.30 7.29 -2.38 -0.02 2.28 16 32 H 0.09 3.08 8.04 -2.39 -0.02 3.06 16 33 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 34 H 0.37 19.91 7.45 -74.06 -0.55 19.36 16 35 H 0.27 14.10 8.31 -92.71 -0.77 13.32 16 36 H 0.03 1.86 7.82 -2.39 -0.02 1.84 16 37 H 0.03 1.45 7.92 -2.39 -0.02 1.43 16 38 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.12 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.04 0.46 7.38 -2.39 -0.02 0.44 16 41 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 43 H 0.04 0.50 7.38 -2.39 -0.02 0.48 16 44 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.09 0.84 7.00 -2.39 -0.02 0.83 16 Total: -1.00 -71.75 363.82 -0.17 -71.92 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.03 Total: 33.30 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: 5.98 Total: 29.24 kcal Atomic # 7 Polarization: -105.63 SS G_CDS: -4.54 Total: -110.16 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -3.62 Total: -68.11 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Total: -71.75 -0.17 -71.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001372956679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.124 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds