Wall clock time and date at job start Tue Mar 31 2020 14:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13609 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.53000 * 109.61588 * 83.42676 * 3 2 1 5 5 N 1.46504 * 109.47069 * 59.77891 * 4 3 2 6 6 C 1.34778 * 120.00217 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99473 * 0.02562 * 6 5 4 8 8 N 1.34770 * 120.00322 * 179.97438 * 6 5 4 9 9 C 1.47023 * 125.64535 * 359.69383 * 8 6 5 10 10 C 1.54336 * 107.26360 * 178.85206 * 9 8 6 11 11 C 1.55156 * 103.02057 * 338.13536 * 10 9 8 12 12 O 1.42898 * 111.00586 * 277.23714 * 11 10 9 13 13 C 1.50703 * 111.03607 * 153.39446 * 11 10 9 14 14 H 1.07997 * 120.00330 * 272.62022 * 13 11 10 15 15 C 1.37884 * 119.99592 * 92.61128 * 13 11 10 16 16 N 1.31516 * 119.99902 * 173.51990 * 15 13 11 17 17 Si 1.86796 * 120.00028 * 353.52431 * 15 13 11 18 18 H 1.48491 * 109.47594 * 87.31924 * 17 15 13 19 19 H 1.48504 * 109.47200 * 207.32151 * 17 15 13 20 20 H 1.48507 * 109.47259 * 327.31560 * 17 15 13 21 21 C 1.47421 * 125.64879 * 180.02562 * 8 6 5 22 22 C 1.53174 * 109.54519 * 323.20485 * 3 2 1 23 23 C 1.53096 * 109.16545 * 297.11272 * 22 3 2 24 24 O 1.42906 * 109.41420 * 302.39129 * 23 22 3 25 25 C 1.42899 * 114.09606 * 61.15589 * 24 23 22 26 26 C 1.53091 * 109.41758 * 298.83855 * 25 24 23 27 27 H 1.09003 * 109.47178 * 179.77778 * 4 3 2 28 28 H 1.08999 * 109.47482 * 299.77747 * 4 3 2 29 29 H 0.96998 * 119.99595 * 0.02562 * 5 4 3 30 30 H 1.09003 * 109.88612 * 298.39379 * 9 8 6 31 31 H 1.08996 * 109.88321 * 59.56016 * 9 8 6 32 32 H 1.09009 * 110.84869 * 219.67054 * 10 9 8 33 33 H 1.08997 * 110.51956 * 96.45306 * 10 9 8 34 34 H 0.96700 * 113.99685 * 168.40459 * 12 11 10 35 35 H 0.96992 * 119.99987 * 179.97438 * 16 15 13 36 36 H 1.08998 * 110.36922 * 322.92430 * 21 8 6 37 37 H 1.08999 * 110.36963 * 85.14460 * 21 8 6 38 38 H 1.08998 * 109.52786 * 177.20696 * 22 3 2 39 39 H 1.08995 * 109.57512 * 57.05131 * 22 3 2 40 40 H 1.09002 * 109.47353 * 62.37155 * 23 22 3 41 41 H 1.08993 * 109.47934 * 182.40481 * 23 22 3 42 42 H 1.09003 * 109.47895 * 178.85763 * 25 24 23 43 43 H 1.09007 * 109.48485 * 58.82381 * 25 24 23 44 44 H 1.08994 * 109.52648 * 297.70885 * 26 25 24 45 45 H 1.08997 * 109.52415 * 177.51344 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1217 -0.1641 -1.4317 5 7 2.6303 0.9420 -2.2572 6 6 2.9587 1.0062 -3.5628 7 8 3.6625 0.1459 -4.0555 8 7 2.5062 2.0234 -4.3222 9 6 1.6455 3.1217 -3.8589 10 6 1.4111 4.0589 -5.0625 11 6 2.6081 3.7359 -5.9954 12 8 3.7759 4.4577 -5.5988 13 6 2.2640 4.0197 -7.4349 14 1 1.7892 3.2590 -8.0367 15 6 2.5552 5.2507 -7.9835 16 7 2.3732 5.4572 -9.2695 17 14 3.2083 6.6251 -6.9001 18 1 4.6875 6.5273 -6.8141 19 1 2.8322 7.9375 -7.4847 20 1 2.6243 6.5035 -5.5401 21 6 2.7867 2.2155 -5.7567 22 6 3.1210 -1.1550 0.8646 23 6 2.6680 -0.9401 2.3111 24 8 3.1516 0.3210 2.7779 25 6 2.6669 1.4424 2.0366 26 6 3.1199 1.3232 0.5791 27 1 4.2118 -0.1593 -1.4295 28 1 2.7634 -1.1091 -1.8399 29 1 2.0691 1.6285 -1.8639 30 1 0.6942 2.7235 -3.5059 31 1 2.1415 3.6683 -3.0569 32 1 1.4356 5.1034 -4.7514 33 1 0.4662 3.8232 -5.5519 34 1 4.5877 4.1613 -6.0328 35 1 2.5777 6.3233 -9.6554 36 1 3.8080 1.9128 -5.9875 37 1 2.0781 1.6490 -6.3610 38 1 4.2098 -1.1846 0.8245 39 1 2.7172 -2.0966 0.4925 40 1 1.5789 -0.9512 2.3563 41 1 3.0661 -1.7371 2.9389 42 1 3.0643 2.3617 2.4667 43 1 1.5778 1.4625 2.0782 44 1 4.2087 1.3438 0.5332 45 1 2.7143 2.1545 0.0024 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001372956683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:19 Heat of formation + Delta-G solvation = -90.264467 kcal Electronic energy + Delta-G solvation = -28183.573739 eV Core-core repulsion = 24201.431984 eV Total energy + Delta-G solvation = -3982.141755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85572 -39.80042 -37.95066 -37.04659 -35.48907 -34.77550 -33.28256 -32.39431 -31.75786 -30.38876 -28.54446 -27.76021 -25.25779 -24.33046 -23.66248 -22.55955 -22.23379 -19.94902 -19.81979 -18.18255 -17.50701 -17.45090 -16.61461 -16.42022 -15.92876 -15.65297 -15.36471 -15.18579 -15.01143 -14.79746 -14.42356 -14.28504 -13.94106 -13.78644 -13.58397 -13.01873 -12.93374 -12.73329 -12.68204 -12.47213 -12.37466 -12.14290 -11.95301 -11.91873 -11.67410 -11.58705 -11.25316 -11.07324 -10.93307 -10.53640 -10.42125 -10.24436 -10.08956 -9.94088 -9.26813 -9.19018 -8.70698 -8.55839 -8.07722 -6.21726 -4.34029 2.28366 2.32122 2.74393 3.25230 3.37285 3.41624 3.43344 3.49936 3.66163 3.98130 4.04220 4.07296 4.19380 4.37286 4.47020 4.65240 4.84468 4.89930 4.98236 5.00850 5.09501 5.13097 5.17227 5.26517 5.29688 5.40720 5.45275 5.46591 5.51419 5.53537 5.72140 5.80790 6.04038 6.36337 6.43427 6.47923 6.59232 6.64938 6.67854 7.00687 7.09154 7.20495 7.44046 8.09718 8.15989 8.58950 8.76743 8.79071 9.39456 10.87150 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.024842 B = 0.002896 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.850664 B = 9666.545901 C = 9977.444960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.205 3.795 3 C 0.027 3.973 4 C 0.154 3.846 5 N -0.753 5.753 6 C 0.722 3.278 7 O -0.595 6.595 8 N -0.627 5.627 9 C 0.100 3.900 10 C -0.120 4.120 11 C 0.220 3.780 12 O -0.559 6.559 13 C -0.553 4.553 14 H 0.082 0.918 15 C 0.074 3.926 16 N -0.887 5.887 17 Si 0.952 3.048 18 H -0.293 1.293 19 H -0.327 1.327 20 H -0.270 1.270 21 C 0.108 3.892 22 C -0.141 4.141 23 C 0.057 3.943 24 O -0.375 6.375 25 C 0.057 3.943 26 C -0.145 4.145 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.393 0.607 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.372 0.628 35 H 0.267 0.733 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.049 0.951 44 H 0.102 0.898 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 -9.519 23.047 25.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.113 4.113 3 C 0.023 3.977 4 C 0.029 3.971 5 N -0.410 5.410 6 C 0.424 3.576 7 O -0.473 6.473 8 N -0.363 5.363 9 C -0.023 4.023 10 C -0.158 4.158 11 C 0.180 3.820 12 O -0.367 6.367 13 C -0.590 4.590 14 H 0.100 0.900 15 C -0.131 4.131 16 N -0.522 5.522 17 Si 0.788 3.212 18 H -0.220 1.220 19 H -0.258 1.258 20 H -0.196 1.196 21 C -0.014 4.014 22 C -0.181 4.181 23 C -0.019 4.019 24 O -0.294 6.294 25 C -0.020 4.020 26 C -0.184 4.184 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.228 0.772 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.220 0.780 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.120 0.880 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.750 -9.802 23.072 25.079 hybrid contribution 0.491 0.742 -0.065 0.892 sum 1.240 -9.059 23.007 24.758 Atomic orbital electron populations 1.81273 1.12402 1.07412 1.07802 1.28894 0.94733 0.94054 0.93648 1.18704 0.82082 0.99237 0.97720 1.21171 1.00090 0.90577 0.85304 1.45090 1.57492 1.29430 1.09011 1.15370 0.80312 0.81637 0.80326 1.90903 1.43110 1.40736 1.72600 1.47705 1.52539 1.24384 1.11677 1.22065 0.92873 0.88529 0.98828 1.22954 1.00006 0.98851 0.93974 1.20243 0.82652 0.85278 0.93861 1.86105 1.18639 1.61350 1.70567 1.21101 1.43309 1.01213 0.93360 0.90047 1.25123 0.93715 0.99187 0.95063 1.69966 1.46527 1.24202 1.11504 0.85628 0.78586 0.77460 0.79528 1.22039 1.25825 1.19630 1.23017 1.01283 0.99450 0.77680 1.22278 1.03693 0.96942 0.95144 1.22638 0.98511 0.86754 0.94044 1.87982 1.71520 1.14047 1.55840 1.22657 0.98474 0.90151 0.90705 1.22368 1.03790 0.95186 0.97072 0.89189 0.90543 0.77210 0.92912 0.92465 0.90125 0.89623 0.78032 0.92371 0.91070 0.91186 0.87992 0.89236 0.93257 0.87715 0.87711 0.93235 0.87994 0.89701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.07 18.54 42.16 0.78 -4.29 16 2 C 0.21 1.95 10.95 -20.76 -0.23 1.73 16 3 C 0.03 0.18 0.50 -157.11 -0.08 0.10 16 4 C 0.15 1.40 4.55 -4.04 -0.02 1.38 16 5 N -0.75 -9.08 4.99 -65.22 -0.33 -9.41 16 6 C 0.72 12.16 8.49 -86.92 -0.74 11.42 16 7 O -0.59 -11.96 16.60 5.29 0.09 -11.87 16 8 N -0.63 -10.94 3.33 -176.22 -0.59 -11.53 16 9 C 0.10 1.57 6.15 -3.06 -0.02 1.55 16 10 C -0.12 -2.25 5.90 -24.89 -0.15 -2.40 16 11 C 0.22 4.70 0.70 -89.61 -0.06 4.63 16 12 O -0.56 -11.72 8.52 -35.23 -0.30 -12.02 16 13 C -0.55 -14.28 8.89 -34.44 -0.31 -14.58 16 14 H 0.08 2.30 8.00 -52.49 -0.42 1.88 16 15 C 0.07 2.02 5.46 -17.82 -0.10 1.92 16 16 N -0.89 -25.92 13.96 55.43 0.77 -25.14 16 17 Si 0.95 22.84 24.93 -169.99 -4.24 18.61 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.33 -8.10 7.11 56.52 0.40 -7.69 16 20 H -0.27 -6.29 5.42 56.52 0.31 -5.99 16 21 C 0.11 2.14 6.07 -2.52 -0.02 2.13 16 22 C -0.14 -0.69 4.90 -26.59 -0.13 -0.82 16 23 C 0.06 0.32 6.61 37.21 0.25 0.57 16 24 O -0.38 -2.79 10.77 -35.23 -0.38 -3.17 16 25 C 0.06 0.36 6.61 37.20 0.25 0.60 16 26 C -0.15 -0.87 4.68 -26.59 -0.12 -1.00 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.39 4.23 5.91 -40.82 -0.24 3.99 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.55 6.65 -51.92 -0.35 1.21 16 33 H 0.09 1.60 8.03 -51.93 -0.42 1.18 16 34 H 0.37 7.01 8.99 45.56 0.41 7.42 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.07 1.44 8.02 -51.93 -0.42 1.02 16 37 H 0.07 1.43 7.99 -51.93 -0.41 1.02 16 38 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.32 7.38 -51.93 -0.38 -0.06 16 41 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.35 7.38 -51.93 -0.38 -0.04 16 44 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.52 6.99 -51.93 -0.36 0.15 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -33.87 358.64 -6.26 -40.14 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.01 Total: 6.04 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -1.47 Total: 7.24 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.64 Total: -50.37 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -0.59 Total: -27.06 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -4.24 Total: 18.61 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.87 -6.26 -40.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001372956683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.129 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds