Wall clock time and date at job start Tue Mar 31 2020 14:22:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99821 * 2 1 4 4 H 1.48499 * 109.46859 * 275.82075 * 3 2 1 5 5 H 1.48501 * 109.47760 * 35.82294 * 3 2 1 6 6 H 1.48497 * 109.47139 * 155.82770 * 3 2 1 7 7 C 1.37873 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00163 * 344.11013 * 7 2 1 9 9 C 1.50706 * 119.99597 * 164.10042 * 7 2 1 10 10 C 1.52998 * 115.55110 * 326.98814 * 9 7 2 11 11 N 1.46496 * 109.47232 * 281.39604 * 10 9 7 12 12 C 1.34773 * 120.00167 * 185.02332 * 11 10 9 13 13 O 1.21594 * 119.99787 * 5.01738 * 12 11 10 14 14 N 1.34774 * 120.00145 * 185.02186 * 12 11 10 15 15 C 1.46808 * 120.33408 * 354.97101 * 14 12 11 16 16 C 1.53429 * 109.42197 * 128.15391 * 15 14 12 17 17 C 1.52915 * 108.13132 * 53.86016 * 16 15 14 18 18 H 1.09001 * 109.96529 * 56.57903 * 17 16 15 19 19 C 1.52960 * 110.84734 * 177.70293 * 17 16 15 20 20 O 1.45617 * 107.75976 * 180.97708 * 19 17 16 21 21 C 1.34137 * 117.92655 * 316.24680 * 20 19 17 22 22 O 1.21517 * 118.24877 * 194.88357 * 21 20 19 23 23 N 1.34109 * 123.53055 * 15.14763 * 21 20 19 24 24 C 1.45595 * 121.79004 * 355.52193 * 23 21 20 25 25 H 1.09001 * 109.00938 * 264.77057 * 24 23 21 26 26 C 1.47228 * 120.32980 * 174.99603 * 14 12 11 27 27 C 1.52997 * 117.51368 * 112.69280 * 9 7 2 28 28 C 1.52994 * 60.00148 * 107.47676 * 27 9 7 29 29 H 0.96999 * 119.99476 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46458 * 161.39554 * 10 9 7 31 31 H 1.08993 * 109.46949 * 41.39968 * 10 9 7 32 32 H 0.97005 * 120.00348 * 5.02246 * 11 10 9 33 33 H 1.09000 * 109.47913 * 248.14267 * 15 14 12 34 34 H 1.09001 * 109.47582 * 8.16175 * 15 14 12 35 35 H 1.08999 * 109.61571 * 173.31036 * 16 15 14 36 36 H 1.09000 * 109.62218 * 293.66146 * 16 15 14 37 37 H 1.09002 * 109.80071 * 300.54060 * 19 17 16 38 38 H 1.08998 * 109.80353 * 61.41043 * 19 17 16 39 39 H 0.97004 * 119.10741 * 175.80365 * 23 21 20 40 40 H 1.09005 * 109.77016 * 113.29542 * 26 14 12 41 41 H 1.08996 * 109.81579 * 352.53149 * 26 14 12 42 42 H 1.09001 * 117.49998 * 214.96911 * 27 9 7 43 43 H 1.08996 * 117.50269 * 359.97438 * 27 9 7 44 44 H 1.09004 * 117.50218 * 252.50800 * 28 27 9 45 45 H 1.09007 * 117.50039 * 107.48875 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3736 2.1174 -1.3929 5 1 1.5136 2.6141 0.8194 6 1 3.6028 1.4078 0.5733 7 6 2.0045 -1.1940 0.0005 8 1 1.4955 -2.1113 0.2570 9 6 3.4684 -1.2191 -0.3570 10 6 3.9117 -0.1870 -1.3958 11 7 3.5401 -0.6511 -2.7347 12 6 3.9209 0.0501 -3.8208 13 8 4.6488 1.0161 -3.6963 14 7 3.4948 -0.3193 -5.0449 15 6 2.7071 -1.5462 -5.2169 16 6 1.4283 -1.2256 -6.0016 17 6 1.8297 -0.5236 -7.2995 18 1 2.5226 -1.1493 -7.8621 19 6 0.6006 -0.2252 -8.1596 20 8 1.0598 0.4186 -9.3823 21 6 1.9937 1.3755 -9.2759 22 8 2.1843 2.1020 -10.2312 23 7 2.7323 1.5705 -8.1736 24 6 2.5078 0.8063 -6.9548 25 1 1.8550 1.3762 -6.2936 26 6 3.8151 0.5033 -6.2232 27 6 4.4606 -1.5773 0.7511 28 6 4.1696 -2.5789 -0.3681 29 1 -0.4849 0.8401 -0.0004 30 1 4.9929 -0.0594 -1.3426 31 1 3.4229 0.7658 -1.1929 32 1 3.0199 -1.4632 -2.8396 33 1 3.2954 -2.2819 -5.7653 34 1 2.4425 -1.9482 -4.2389 35 1 0.9001 -2.1504 -6.2341 36 1 0.7859 -0.5774 -5.4056 37 1 0.0855 -1.1546 -8.4026 38 1 -0.0734 0.4416 -7.6218 39 1 3.4325 2.2417 -8.1874 40 1 4.4885 -0.0440 -6.8829 41 1 4.2851 1.4346 -5.9070 42 1 5.4293 -1.0777 0.7402 43 1 4.0548 -1.7945 1.7392 44 1 3.5722 -3.4553 -0.1166 45 1 4.9468 -2.7383 -1.1156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001470013216.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:43 Heat of formation + Delta-G solvation = -56.338442 kcal Electronic energy + Delta-G solvation = -28665.037810 eV Core-core repulsion = 24684.367198 eV Total energy + Delta-G solvation = -3980.670612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58109 -40.11762 -38.21400 -37.29248 -36.83546 -35.09991 -33.56163 -33.08824 -32.38027 -30.16369 -28.34894 -26.90223 -25.16707 -24.43193 -23.47200 -22.43081 -21.55989 -20.36471 -19.70459 -19.41647 -18.67168 -18.18996 -17.44789 -16.62161 -16.47233 -16.02700 -15.74706 -15.52088 -15.15032 -15.07058 -14.60404 -14.30211 -14.09574 -13.95738 -13.66976 -13.36769 -13.12825 -13.01947 -12.74940 -12.39418 -12.14288 -12.08521 -11.85368 -11.41987 -11.17130 -11.06232 -10.90719 -10.71244 -10.58466 -10.54861 -10.19271 -9.97361 -9.64773 -9.56931 -9.46730 -9.11784 -8.83574 -8.50995 -8.21190 -6.34325 -4.26729 2.26539 2.42984 2.73702 3.19527 3.22448 3.31293 3.34116 3.39556 3.87399 3.99804 4.08246 4.23714 4.30777 4.50033 4.62112 4.69651 4.80162 4.92043 4.97585 5.02939 5.22494 5.31392 5.31863 5.43211 5.48764 5.50585 5.55385 5.64585 5.78583 5.86295 6.04016 6.10405 6.27953 6.37308 6.41327 6.48811 6.58582 6.76579 6.92422 6.99483 7.09346 7.34533 7.55174 7.84595 8.22024 8.30131 8.71477 8.82264 9.31569 10.76659 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018175 B = 0.003520 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.244714 B = 7951.811052 C = 8130.905110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.083 3.917 3 Si 0.885 3.115 4 H -0.279 1.279 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.491 4.491 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.166 3.834 11 N -0.718 5.718 12 C 0.705 3.295 13 O -0.596 6.596 14 N -0.632 5.632 15 C 0.109 3.891 16 C -0.124 4.124 17 C -0.138 4.138 18 H 0.097 0.903 19 C 0.066 3.934 20 O -0.343 6.343 21 C 0.661 3.339 22 O -0.538 6.538 23 N -0.722 5.722 24 C 0.117 3.883 25 H 0.086 0.914 26 C 0.130 3.870 27 C -0.199 4.199 28 C -0.188 4.188 29 H 0.267 0.733 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.402 0.598 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.421 0.579 40 H 0.073 0.927 41 H 0.103 0.897 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 -4.452 -12.997 14.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.121 4.121 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.528 4.528 8 H 0.098 0.902 9 C -0.008 4.008 10 C 0.043 3.957 11 N -0.374 5.374 12 C 0.406 3.594 13 O -0.475 6.475 14 N -0.371 5.371 15 C -0.014 4.014 16 C -0.163 4.163 17 C -0.157 4.157 18 H 0.115 0.885 19 C -0.008 4.008 20 O -0.254 6.254 21 C 0.414 3.586 22 O -0.423 6.423 23 N -0.390 5.390 24 C 0.010 3.990 25 H 0.104 0.896 26 C 0.005 3.995 27 C -0.237 4.237 28 C -0.225 4.225 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.240 0.760 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.260 0.740 40 H 0.091 0.909 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.103 0.897 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.310 -3.549 -13.539 14.383 hybrid contribution 0.420 0.699 0.338 0.883 sum 3.730 -2.850 -13.201 14.011 Atomic orbital electron populations 1.69938 1.06419 1.27476 1.47767 1.24954 0.94513 0.99024 0.93621 0.86898 0.80273 0.83576 0.77550 1.20660 1.22643 1.18878 1.20285 0.89476 0.95508 1.47520 0.90213 1.19545 0.94467 0.92211 0.94535 1.21214 0.97938 0.96976 0.79602 1.45250 1.58159 1.29199 1.04784 1.15884 0.80521 0.82755 0.80203 1.90883 1.41390 1.30153 1.85060 1.47116 1.58123 1.26122 1.05703 1.21688 0.91523 0.86451 1.01781 1.21907 0.98348 1.01889 0.94151 1.22141 0.98100 0.97045 0.98440 0.88480 1.23565 0.95607 0.98901 0.82746 1.86657 1.53738 1.49709 1.35268 1.17892 0.78385 0.79413 0.82943 1.91040 1.69955 1.43638 1.37658 1.45282 1.39288 1.42556 1.11856 1.21483 0.98959 0.92251 0.86295 0.89597 1.21457 0.94276 0.97569 0.86150 1.23133 1.00241 1.05052 0.95320 1.22786 1.03367 0.94463 1.01890 0.92312 0.92667 0.92894 0.76045 0.91029 0.88888 0.88986 0.89766 0.86301 0.89987 0.74028 0.90899 0.87851 0.91131 0.89293 0.89723 0.90890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.56 13.96 55.43 0.77 -23.79 16 2 C 0.08 2.20 5.40 -17.82 -0.10 2.11 16 3 Si 0.89 21.44 24.32 -169.99 -4.13 17.31 16 4 H -0.28 -6.92 6.87 56.52 0.39 -6.53 16 5 H -0.30 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.26 -6.20 6.80 56.52 0.38 -5.82 16 7 C -0.49 -12.37 9.56 -34.44 -0.33 -12.70 16 8 H 0.08 2.17 8.06 -52.49 -0.42 1.75 16 9 C -0.01 -0.13 1.30 -155.66 -0.20 -0.33 16 10 C 0.17 3.48 4.65 -4.05 -0.02 3.46 16 11 N -0.72 -12.94 5.44 -65.23 -0.36 -13.30 16 12 C 0.71 12.34 8.29 -86.92 -0.72 11.62 16 13 O -0.60 -12.59 15.74 5.28 0.08 -12.51 16 14 N -0.63 -7.89 2.98 -178.41 -0.53 -8.42 16 15 C 0.11 0.99 6.39 -3.65 -0.02 0.97 16 16 C -0.12 -0.89 5.50 -26.55 -0.15 -1.04 16 17 C -0.14 -1.00 2.07 -90.58 -0.19 -1.19 16 18 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 19 C 0.07 0.48 6.61 37.14 0.25 0.72 16 20 O -0.34 -3.88 10.46 -39.10 -0.41 -4.29 16 21 C 0.66 8.31 8.54 53.76 0.46 8.77 16 22 O -0.54 -8.83 17.96 -19.43 -0.35 -9.18 16 23 N -0.72 -7.00 5.31 -59.59 -0.32 -7.31 16 24 C 0.12 1.06 2.96 -68.39 -0.20 0.86 16 25 H 0.09 0.88 8.13 -51.93 -0.42 0.46 16 26 C 0.13 1.36 6.08 -3.72 -0.02 1.33 16 27 C -0.20 -3.85 9.88 -26.74 -0.26 -4.11 16 28 C -0.19 -3.38 9.93 -26.73 -0.27 -3.64 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.06 1.14 7.92 -51.93 -0.41 0.72 16 31 H 0.05 1.25 1.79 -51.93 -0.09 1.16 16 32 H 0.40 6.47 5.91 -40.82 -0.24 6.23 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.92 5.54 -51.93 -0.29 0.64 16 35 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.12 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.42 3.64 8.78 -40.82 -0.36 3.28 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 1.25 7.04 -51.93 -0.37 0.88 16 42 H 0.07 1.26 8.10 -51.93 -0.42 0.84 16 43 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 44 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 45 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -33.41 355.11 -8.08 -41.49 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -6.42 Total: 7.83 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -1.77 Total: 6.82 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.43 Total: -52.82 kcal Atomic # 8 Polarization: -25.29 SS G_CDS: -0.67 Total: -25.97 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.13 Total: 17.31 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.41 -8.08 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001470013216.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.852 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds