Wall clock time and date at job start Tue Mar 31 2020 14:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35326 * 126.66433 * 2 1 4 4 C 1.42272 * 103.92028 * 179.97438 * 3 2 1 5 5 C 1.48329 * 126.93606 * 179.97438 * 4 3 2 6 6 O 1.21503 * 120.00051 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99999 * 179.71983 * 5 4 3 8 8 C 1.46504 * 119.99858 * 180.27206 * 7 5 4 9 9 C 1.53112 * 109.52276 * 274.68595 * 8 7 5 10 10 C 1.53045 * 109.27609 * 182.44375 * 9 8 7 11 11 N 1.46839 * 109.52676 * 59.17839 * 10 9 8 12 12 C 1.46895 * 111.00151 * 174.15870 * 11 10 9 13 13 C 1.52999 * 109.47366 * 314.21216 * 12 11 10 14 14 H 1.08997 * 109.46961 * 59.99658 * 13 12 11 15 15 O 1.42896 * 109.47051 * 299.99645 * 13 12 11 16 16 C 1.50700 * 109.47139 * 179.97438 * 13 12 11 17 17 H 1.08002 * 119.99956 * 0.02562 * 16 13 12 18 18 C 1.37871 * 119.99965 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00238 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00223 * 180.02562 * 18 16 13 21 21 H 1.48502 * 109.46943 * 359.97438 * 20 18 16 22 22 H 1.48495 * 109.47457 * 120.00008 * 20 18 16 23 23 H 1.48495 * 109.47438 * 240.00395 * 20 18 16 24 24 C 1.46851 * 111.19656 * 298.26193 * 11 10 9 25 25 C 1.53037 * 109.52313 * 61.73959 * 24 11 10 26 26 N 1.30982 * 106.12670 * 0.25669 * 4 3 2 27 27 O 1.20911 * 111.43459 * 359.53991 * 26 4 3 28 28 H 1.08999 * 109.47028 * 90.00889 * 1 2 3 29 29 H 1.09000 * 109.46668 * 210.00081 * 1 2 3 30 30 H 1.08992 * 109.47316 * 330.00543 * 1 2 3 31 31 H 1.08002 * 128.03452 * 359.95079 * 3 2 1 32 32 H 0.96991 * 119.99719 * 0.28109 * 7 5 4 33 33 H 1.08998 * 109.52159 * 34.88010 * 8 7 5 34 34 H 1.09001 * 109.50622 * 302.37720 * 9 8 7 35 35 H 1.09002 * 109.50724 * 62.50577 * 9 8 7 36 36 H 1.09002 * 109.45960 * 299.16015 * 10 9 8 37 37 H 1.09009 * 109.45231 * 179.19320 * 10 9 8 38 38 H 1.09010 * 109.46886 * 74.21317 * 12 11 10 39 39 H 1.08999 * 109.47289 * 194.20577 * 12 11 10 40 40 H 0.96700 * 114.00212 * 300.00522 * 15 13 12 41 41 H 0.96998 * 120.00125 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.45975 * 301.72078 * 24 11 10 43 43 H 1.09003 * 109.45122 * 181.75242 * 24 11 10 44 44 H 1.08998 * 109.49803 * 180.88149 * 25 24 11 45 45 H 1.08994 * 109.53523 * 60.78354 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0855 0.0000 4 6 3.6271 0.5355 0.0006 5 6 4.9076 1.2843 0.0003 6 8 4.9008 2.4993 -0.0010 7 7 6.0785 0.6169 0.0067 8 6 7.3431 1.3566 0.0125 9 6 7.7324 1.7155 -1.4241 10 6 9.0837 2.4342 -1.4168 11 7 10.1010 1.5604 -0.8188 12 6 11.4373 2.1619 -0.9205 13 6 11.6452 2.7066 -2.3350 14 1 10.8893 3.4624 -2.5480 15 8 11.5304 1.6391 -3.2781 16 6 13.0158 3.3242 -2.4391 17 1 13.6731 3.3275 -1.5822 18 6 13.4311 3.8841 -3.6286 19 7 12.6310 3.8796 -4.6723 20 14 15.1304 4.6491 -3.7580 21 1 15.8288 4.5269 -2.4531 22 1 15.9118 3.9450 -4.8061 23 1 15.0012 6.0842 -4.1170 24 6 9.7726 1.2405 0.5763 25 6 8.4420 0.4863 0.6285 26 7 3.4762 -0.7656 -0.0047 27 8 2.3073 -1.0749 0.0007 28 1 -0.3633 -0.0002 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 2.0300 2.1273 -0.0007 32 1 6.0839 -0.3530 0.0074 33 1 7.2291 2.2684 0.5987 34 1 7.8077 0.8053 -2.0191 35 1 6.9744 2.3704 -1.8539 36 1 9.0041 3.3513 -0.8332 37 1 9.3705 2.6784 -2.4398 38 1 11.5249 2.9762 -0.2010 39 1 12.1932 1.4061 -0.7074 40 1 12.1736 0.9288 -3.1484 41 1 12.9233 4.2732 -5.5093 42 1 9.6898 2.1633 1.1506 43 1 10.5600 0.6178 1.0011 44 1 8.1908 0.2628 1.6653 45 1 8.5278 -0.4435 0.0663 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473231191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:47 Heat of formation + Delta-G solvation = -48.572091 kcal Electronic energy + Delta-G solvation = -27105.976221 eV Core-core repulsion = 23125.642383 eV Total energy + Delta-G solvation = -3980.333838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.17805 -41.25862 -39.87152 -37.69293 -35.95226 -35.22615 -34.39933 -34.21925 -32.68434 -31.94049 -29.80171 -28.71021 -27.15891 -25.80155 -24.64514 -24.04447 -23.48945 -21.97548 -21.37562 -20.68907 -19.16823 -18.94138 -18.65215 -17.96994 -17.45367 -16.68796 -16.66706 -16.28267 -16.21914 -15.88972 -15.62087 -15.40838 -15.02910 -14.79109 -14.68784 -14.53467 -14.24204 -14.04512 -13.94748 -13.34864 -13.25934 -13.05888 -12.95738 -12.75291 -12.70726 -12.45441 -12.28197 -12.23817 -12.07232 -11.89683 -11.72135 -11.60504 -11.40168 -10.93102 -10.69375 -10.42073 -10.27035 -10.06394 -9.18052 -8.14292 -6.39850 -0.02503 0.63475 1.38658 1.39932 1.52027 1.68861 1.94475 2.04176 2.37477 2.79799 3.00675 3.12326 3.47097 3.64527 3.76581 3.90818 4.01773 4.09148 4.13315 4.27914 4.30154 4.31454 4.40571 4.49758 4.53845 4.59971 4.70427 4.77801 4.81029 4.85700 4.86017 4.91259 4.95612 5.04971 5.09763 5.18668 5.25214 5.30472 5.60812 5.75718 5.97484 6.17001 6.21333 6.29079 6.73565 6.82467 6.98053 7.34291 7.61122 8.90294 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.031530 B = 0.002129 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.836812 B =13148.095645 C =13494.702876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.205 4.205 4 C -0.047 4.047 5 C 0.596 3.404 6 O -0.557 6.557 7 N -0.696 5.696 8 C 0.151 3.849 9 C -0.112 4.112 10 C 0.063 3.937 11 N -0.532 5.532 12 C 0.046 3.954 13 C 0.230 3.770 14 H 0.024 0.976 15 O -0.570 6.570 16 C -0.587 4.587 17 H 0.060 0.940 18 C 0.024 3.976 19 N -0.900 5.900 20 Si 0.961 3.039 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.281 1.281 24 C 0.054 3.946 25 C -0.108 4.108 26 N -0.346 5.346 27 O 0.125 5.875 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.190 0.810 32 H 0.416 0.584 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.062 0.938 38 H 0.025 0.975 39 H 0.076 0.924 40 H 0.354 0.646 41 H 0.261 0.739 42 H 0.030 0.970 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.580 -11.011 13.375 29.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.228 4.228 4 C -0.205 4.205 5 C 0.380 3.620 6 O -0.434 6.434 7 N -0.347 5.347 8 C 0.047 3.953 9 C -0.151 4.151 10 C -0.066 4.066 11 N -0.257 5.257 12 C -0.081 4.081 13 C 0.172 3.828 14 H 0.041 0.959 15 O -0.373 6.373 16 C -0.625 4.625 17 H 0.078 0.922 18 C -0.178 4.178 19 N -0.537 5.537 20 Si 0.785 3.215 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.207 1.207 24 C -0.074 4.074 25 C -0.146 4.146 26 N -0.046 5.046 27 O 0.048 5.952 28 H 0.126 0.874 29 H 0.122 0.878 30 H 0.130 0.870 31 H 0.207 0.793 32 H 0.253 0.747 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.094 0.906 40 H 0.199 0.801 41 H 0.070 0.930 42 H 0.048 0.952 43 H 0.112 0.888 44 H 0.116 0.884 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.156 -11.145 12.724 28.675 hybrid contribution 1.279 1.638 0.090 2.080 sum -21.877 -9.507 12.814 27.077 Atomic orbital electron populations 1.20686 0.79745 1.06690 1.05982 1.25255 0.98088 0.83860 1.00163 1.22700 0.89033 1.02814 1.08206 1.23454 0.96854 0.90762 1.09381 1.17185 0.82515 0.86155 0.76109 1.90797 1.87303 1.14016 1.51273 1.45866 1.04634 1.11185 1.73016 1.21052 0.82296 0.95755 0.96198 1.21827 0.95239 1.00905 0.97108 1.21947 0.91483 0.93356 0.99837 1.61962 1.01559 1.44649 1.17522 1.22699 0.89850 0.97130 0.98462 1.19292 0.94277 0.85365 0.83884 0.95857 1.86491 1.59073 1.33448 1.58299 1.22095 1.02434 1.40254 0.97756 0.92180 1.25908 1.01124 0.95348 0.95434 1.70226 1.37622 1.43768 1.02081 0.85495 0.79628 0.77902 0.78443 1.18625 1.20417 1.20700 1.22156 0.97788 0.99202 0.88262 1.21787 0.91814 0.98795 1.02234 1.74161 0.98388 1.15175 1.16894 1.84743 1.10813 1.34202 1.65462 0.87443 0.87788 0.86953 0.79291 0.74731 0.90673 0.90950 0.92701 0.96250 0.91990 0.95671 0.90559 0.80122 0.93047 0.95166 0.88772 0.88424 0.89602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.13 10.45 71.24 0.74 0.62 16 2 C -0.01 -0.13 7.47 25.01 0.19 0.06 16 3 C -0.20 -3.56 10.92 22.60 0.25 -3.31 16 4 C -0.05 -1.08 7.19 42.96 0.31 -0.77 16 5 C 0.60 16.50 7.82 86.93 0.68 17.18 16 6 O -0.56 -19.12 16.61 -3.73 -0.06 -19.18 16 7 N -0.70 -16.78 5.08 -444.57 -2.26 -19.03 16 8 C 0.15 4.01 2.52 45.07 0.11 4.13 16 9 C -0.11 -3.61 5.67 30.65 0.17 -3.44 16 10 C 0.06 2.39 4.85 86.33 0.42 2.81 16 11 N -0.53 -19.02 4.67 -896.33 -4.19 -23.21 16 12 C 0.05 1.91 4.87 86.30 0.42 2.33 16 13 C 0.23 11.85 2.12 29.85 0.06 11.91 16 14 H 0.02 1.37 6.21 -2.39 -0.01 1.36 16 15 O -0.57 -30.11 12.40 -148.98 -1.85 -31.96 16 16 C -0.59 -32.51 8.76 25.60 0.22 -32.29 16 17 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 18 C 0.02 1.37 5.40 84.65 0.46 1.82 16 19 N -0.90 -54.62 12.84 21.44 0.28 -54.35 16 20 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 C 0.05 1.46 5.42 86.33 0.47 1.93 16 25 C -0.11 -2.38 5.57 30.65 0.17 -2.21 16 26 N -0.35 -7.33 11.84 -49.52 -0.59 -7.92 16 27 O 0.12 2.06 11.18 71.93 0.80 2.87 16 28 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 29 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.11 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.19 2.79 8.06 -2.91 -0.02 2.77 16 32 H 0.42 8.32 8.36 -92.72 -0.78 7.54 16 33 H 0.08 2.23 7.58 -2.39 -0.02 2.21 16 34 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.06 2.87 5.66 -2.38 -0.01 2.85 16 38 H 0.03 1.03 8.08 -2.38 -0.02 1.01 16 39 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 40 H 0.35 16.73 9.04 -74.06 -0.67 16.06 16 41 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 2.25 8.12 -2.39 -0.02 2.23 16 44 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -73.76 373.08 -1.58 -75.34 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.42 Total: 30.79 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 4.68 Total: 0.78 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -6.76 Total: -104.51 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -1.10 Total: -48.27 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -73.76 -1.58 -75.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473231191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.769 kcal (2) G-P(sol) polarization free energy of solvation -73.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds