Wall clock time and date at job start Tue Mar 31 2020 13:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00518 * 2 1 4 4 O 1.21283 * 119.99547 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00413 * 179.97438 * 3 2 1 6 6 C 1.50702 * 109.47046 * 180.02562 * 5 3 2 7 7 N 1.29023 * 124.91650 * 90.27965 * 6 5 3 8 8 C 1.31787 * 117.12462 * 180.22314 * 7 6 5 9 9 C 1.50696 * 122.75296 * 179.75005 * 8 7 6 10 10 N 1.46900 * 109.47489 * 274.71599 * 9 8 7 11 11 C 1.46845 * 110.99899 * 294.21137 * 10 9 8 12 12 C 1.53037 * 109.52748 * 174.16037 * 11 10 9 13 13 C 1.53117 * 109.27773 * 59.17457 * 12 11 10 14 14 C 1.53118 * 109.16025 * 302.34847 * 13 12 11 15 15 H 1.08995 * 109.53955 * 297.69328 * 14 13 12 16 16 C 1.50703 * 109.50376 * 177.59325 * 14 13 12 17 17 H 1.08004 * 120.00342 * 245.62989 * 16 14 13 18 18 C 1.37883 * 119.99605 * 65.63064 * 16 14 13 19 19 N 1.31513 * 120.00446 * 9.55624 * 18 16 14 20 20 Si 1.86799 * 119.99788 * 189.55642 * 18 16 14 21 21 H 1.48502 * 109.47383 * 94.98812 * 20 18 16 22 22 H 1.48497 * 109.47336 * 214.99057 * 20 18 16 23 23 H 1.48501 * 109.47486 * 334.99035 * 20 18 16 24 24 C 1.46841 * 111.00307 * 169.99545 * 10 9 8 25 25 C 1.33640 * 114.49649 * 359.48953 * 8 7 6 26 26 S 1.70979 * 124.91281 * 269.97737 * 6 5 3 27 27 H 1.08996 * 109.47201 * 300.00281 * 1 2 3 28 28 H 1.09004 * 109.46788 * 59.99656 * 1 2 3 29 29 H 1.08996 * 109.47236 * 180.02562 * 1 2 3 30 30 H 0.97004 * 119.99650 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.46910 * 60.00298 * 5 3 2 32 32 H 1.09000 * 109.46791 * 299.99641 * 5 3 2 33 33 H 1.09002 * 109.47161 * 154.71299 * 9 8 7 34 34 H 1.09001 * 109.46751 * 34.71227 * 9 8 7 35 35 H 1.09005 * 109.45881 * 294.17335 * 11 10 9 36 36 H 1.09001 * 109.46542 * 54.14125 * 11 10 9 37 37 H 1.09001 * 109.49776 * 299.23733 * 12 11 10 38 38 H 1.08993 * 109.50609 * 179.11728 * 12 11 10 39 39 H 1.09001 * 109.52403 * 182.44443 * 13 12 11 40 40 H 1.08997 * 109.52400 * 62.25306 * 13 12 11 41 41 H 0.96993 * 120.00301 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.46655 * 305.85738 * 24 10 9 43 43 H 1.09005 * 109.45739 * 65.82726 * 24 10 9 44 44 H 1.08004 * 126.03902 * 180.26570 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5326 2.2175 0.0005 5 6 3.6460 1.1671 0.0006 6 6 4.1483 2.5879 0.0011 7 7 4.3990 3.2822 1.0593 8 6 4.8291 4.5151 0.8811 9 6 5.1547 5.4386 2.0266 10 7 3.9291 6.1121 2.4763 11 6 3.4088 7.0079 1.4355 12 6 2.0600 7.5786 1.8794 13 6 2.2424 8.3437 3.1931 14 6 2.8306 7.4006 4.2463 15 1 2.1344 6.5831 4.4331 16 6 3.0685 8.1609 5.5256 17 1 4.0757 8.3088 5.8866 18 6 2.0004 8.6677 6.2352 19 7 0.7726 8.3322 5.9045 20 14 2.2975 9.8308 7.6663 21 1 2.1936 11.2346 7.1932 22 1 1.2810 9.5875 8.7212 23 1 3.6541 9.5952 8.2225 24 6 4.1571 6.8351 3.7339 25 6 4.9582 4.8774 -0.3987 26 16 4.4756 3.5107 -1.4006 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.9499 -0.8401 0.0004 31 1 4.0096 0.6531 -0.8891 32 1 4.0089 0.6535 0.8909 33 1 5.8792 6.1838 1.6979 34 1 5.5752 4.8615 2.8502 35 1 4.1129 7.8241 1.2737 36 1 3.2797 6.4504 0.5078 37 1 1.3514 6.7638 2.0282 38 1 1.6815 8.2555 1.1136 39 1 1.2766 8.7151 3.5355 40 1 2.9210 9.1819 3.0352 41 1 0.0213 8.6884 6.4038 42 1 4.5715 6.1522 4.4755 43 1 4.8576 7.6521 3.5612 44 1 5.2982 5.8383 -0.7560 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473635814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:46 Heat of formation + Delta-G solvation = -20.188148 kcal Electronic energy + Delta-G solvation = -25011.307332 eV Core-core repulsion = 21474.957186 eV Total energy + Delta-G solvation = -3536.350146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.26631 -40.49079 -39.44569 -35.76086 -35.60745 -34.09794 -33.00755 -31.73298 -30.18842 -27.88338 -27.42507 -26.88845 -24.44870 -23.43935 -22.98584 -21.54484 -20.71832 -20.38758 -18.78518 -18.38437 -18.28584 -17.10280 -16.89804 -16.53036 -16.49450 -16.02508 -15.69955 -15.32198 -15.05733 -14.97656 -14.52223 -14.44819 -14.38617 -13.99955 -13.89785 -13.74892 -13.49809 -13.07621 -13.00209 -12.86731 -12.81019 -12.71539 -12.56295 -12.09690 -11.94109 -11.77363 -11.41662 -11.14555 -10.89243 -10.71253 -10.55649 -10.43379 -10.26955 -10.14767 -9.68887 -9.10830 -8.12234 -6.22238 -0.25620 0.47115 0.76020 1.40574 1.41160 1.52238 1.59151 1.70900 2.35427 2.43168 3.05991 3.17509 3.21840 3.67871 3.97977 4.09318 4.15228 4.21146 4.28601 4.33368 4.37783 4.48130 4.54553 4.55434 4.58199 4.62174 4.65548 4.81395 4.84283 4.90407 4.96597 5.03781 5.13159 5.14711 5.33573 5.41109 5.42120 5.62344 5.91581 6.02293 6.15284 6.29806 6.44528 6.53576 6.89393 6.91127 7.26403 7.44589 8.96977 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.003077 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.122299 B = 9096.208616 C =10127.842531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.507 3.493 4 O -0.582 6.582 5 C -0.061 4.061 6 C 0.046 3.954 7 N -0.483 5.483 8 C 0.068 3.932 9 C 0.129 3.871 10 N -0.550 5.550 11 C 0.071 3.929 12 C -0.110 4.110 13 C -0.094 4.094 14 C 0.052 3.948 15 H -0.009 1.009 16 C -0.535 4.535 17 H 0.056 0.944 18 C 0.013 3.987 19 N -0.920 5.920 20 Si 0.956 3.044 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.265 1.265 24 C 0.086 3.914 25 C -0.257 4.257 26 S 0.166 5.834 27 H 0.036 0.964 28 H 0.050 0.950 29 H 0.116 0.884 30 H 0.424 0.576 31 H 0.160 0.840 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.037 0.963 40 H 0.039 0.961 41 H 0.260 0.740 42 H 0.055 0.945 43 H 0.028 0.972 44 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.374 -18.465 -19.249 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.293 3.707 4 O -0.461 6.461 5 C -0.104 4.104 6 C -0.233 4.233 7 N -0.198 5.198 8 C -0.065 4.065 9 C 0.000 4.000 10 N -0.275 5.275 11 C -0.056 4.056 12 C -0.148 4.148 13 C -0.133 4.133 14 C 0.033 3.967 15 H 0.009 0.991 16 C -0.574 4.574 17 H 0.074 0.926 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.781 3.219 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.189 1.189 24 C -0.041 4.041 25 C -0.397 4.397 26 S 0.422 5.578 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.261 0.739 31 H 0.178 0.822 32 H 0.160 0.840 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.046 0.954 44 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 7.262 -18.513 -19.685 27.981 hybrid contribution 0.373 1.620 1.773 2.430 sum 7.635 -16.893 -17.912 25.778 Atomic orbital electron populations 1.21640 0.79107 1.04284 1.00992 1.45608 1.08149 1.08469 1.74925 1.20854 0.90492 0.83925 0.75457 1.90801 1.71332 1.33428 1.50513 1.20411 0.90896 0.89560 1.09495 1.26650 1.03336 1.01687 0.91586 1.65943 1.14082 1.06864 1.32938 1.20050 1.00931 0.91125 0.94351 1.20541 0.90816 0.94303 0.94386 1.61763 1.29564 1.31959 1.04249 1.21972 0.95620 0.94046 0.94011 1.21561 0.96888 0.98704 0.97664 1.21389 0.99922 0.97737 0.94222 1.18576 0.91858 0.93361 0.92878 0.99122 1.21492 0.92915 1.34974 1.08003 0.92556 1.25790 0.94845 0.97947 1.00018 1.70142 0.98971 1.44279 1.42501 0.85578 0.78123 0.79328 0.78843 1.19999 1.21113 1.18887 1.21967 0.97896 0.94886 0.89371 1.27138 1.11580 1.05410 0.95536 1.83388 1.58746 1.04663 1.11019 0.94505 0.93143 0.86515 0.73858 0.82207 0.84014 0.91472 0.90061 0.94105 0.90952 0.94775 0.90932 0.94436 0.94261 0.93109 0.92640 0.95359 0.78760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.18 10.70 127.77 1.37 2.54 16 2 N -0.72 -9.63 5.71 -484.53 -2.77 -12.40 16 3 C 0.51 11.24 7.82 87.66 0.69 11.92 16 4 O -0.58 -20.48 16.03 -3.04 -0.05 -20.53 16 5 C -0.06 -0.96 6.28 29.10 0.18 -0.77 16 6 C 0.05 1.15 5.88 88.52 0.52 1.67 16 7 N -0.48 -15.76 10.53 -179.40 -1.89 -17.65 16 8 C 0.07 2.11 5.57 41.52 0.23 2.34 16 9 C 0.13 4.27 5.41 85.56 0.46 4.73 16 10 N -0.55 -22.50 4.65 -900.94 -4.19 -26.69 16 11 C 0.07 2.68 5.24 86.33 0.45 3.13 16 12 C -0.11 -4.78 6.09 30.65 0.19 -4.59 16 13 C -0.09 -4.80 5.09 30.67 0.16 -4.64 16 14 C 0.05 2.86 2.13 -11.49 -0.02 2.84 16 15 H -0.01 -0.61 8.09 -2.39 -0.02 -0.63 16 16 C -0.54 -31.06 8.48 25.60 0.22 -30.85 16 17 H 0.06 3.16 7.77 -2.91 -0.02 3.14 16 18 C 0.01 0.74 5.22 84.66 0.44 1.19 16 19 N -0.92 -56.87 12.19 21.45 0.26 -56.60 16 20 Si 0.96 45.30 29.55 68.60 2.03 47.33 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.09 3.92 4.68 86.33 0.40 4.32 16 25 C -0.26 -6.38 9.73 66.78 0.65 -5.73 16 26 S 0.17 3.49 23.18 -56.49 -1.31 2.18 16 27 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.42 1.78 8.83 -92.71 -0.82 0.96 16 31 H 0.16 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.87 8.08 -2.39 -0.02 1.86 16 34 H 0.08 2.73 7.99 -2.39 -0.02 2.71 16 35 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.07 2.54 6.13 -2.39 -0.01 2.53 16 37 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.04 2.13 6.99 -2.39 -0.02 2.11 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.06 2.54 8.02 -2.39 -0.02 2.52 16 43 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.20 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -83.33 371.19 -1.80 -85.13 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.18 Total: 11.11 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 5.94 Total: -11.89 kcal Atomic # 7 Polarization: -104.76 SS G_CDS: -8.58 Total: -113.34 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.31 Total: 2.18 kcal Total: -83.33 -1.80 -85.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473635814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.942 kcal (2) G-P(sol) polarization free energy of solvation -83.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds