Wall clock time and date at job start Tue Mar 31 2020 13:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34772 * 120.00102 * 2 1 4 4 O 1.21283 * 120.00036 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00005 * 179.97438 * 3 2 1 6 6 C 1.50703 * 109.46992 * 179.97438 * 5 3 2 7 7 N 1.29023 * 124.91308 * 89.98439 * 6 5 3 8 8 C 1.31785 * 117.12342 * 180.02562 * 7 6 5 9 9 C 1.50695 * 122.75402 * 180.02562 * 8 7 6 10 10 N 1.46905 * 109.47097 * 274.98358 * 9 8 7 11 11 C 1.46846 * 111.00063 * 66.04137 * 10 9 8 12 12 C 1.53041 * 109.52161 * 185.83735 * 11 10 9 13 13 C 1.53120 * 109.27799 * 300.82102 * 12 11 10 14 14 C 1.53127 * 109.15954 * 57.65674 * 13 12 11 15 15 H 1.08998 * 109.49945 * 62.28641 * 14 13 12 16 16 C 1.50701 * 109.49969 * 182.36086 * 14 13 12 17 17 H 1.07995 * 119.99570 * 119.99829 * 16 14 13 18 18 C 1.37872 * 120.00081 * 299.99853 * 16 14 13 19 19 N 1.31514 * 120.00315 * 0.02562 * 18 16 14 20 20 Si 1.86801 * 119.99864 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47362 * 89.99825 * 20 18 16 22 22 H 1.48505 * 109.47176 * 209.99899 * 20 18 16 23 23 H 1.48502 * 109.47159 * 329.99510 * 20 18 16 24 24 C 1.46847 * 110.99618 * 190.25162 * 10 9 8 25 25 C 1.33643 * 114.49774 * 0.02562 * 8 7 6 26 26 S 1.70974 * 124.91459 * 270.02278 * 6 5 3 27 27 H 1.09002 * 109.46934 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47238 * 300.00087 * 1 2 3 29 29 H 1.09007 * 109.46713 * 60.00205 * 1 2 3 30 30 H 0.97001 * 119.99253 * 179.97438 * 2 1 3 31 31 H 1.09006 * 109.46827 * 60.00390 * 5 3 2 32 32 H 1.08999 * 109.47224 * 299.99897 * 5 3 2 33 33 H 1.09005 * 109.46695 * 34.97828 * 9 8 7 34 34 H 1.08995 * 109.47696 * 154.97822 * 9 8 7 35 35 H 1.08993 * 109.46484 * 305.85827 * 11 10 9 36 36 H 1.08997 * 109.46097 * 65.82577 * 11 10 9 37 37 H 1.09004 * 109.49953 * 60.76483 * 12 11 10 38 38 H 1.08994 * 109.50026 * 180.88052 * 12 11 10 39 39 H 1.09002 * 109.51665 * 177.55468 * 13 12 11 40 40 H 1.08990 * 109.52539 * 297.68460 * 13 12 11 41 41 H 0.97000 * 120.00412 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.46893 * 294.17333 * 24 10 9 43 43 H 1.09008 * 109.46305 * 54.14620 * 24 10 9 44 44 H 1.08007 * 126.03527 * 180.25708 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6459 1.1671 0.0006 6 6 4.1483 2.5880 -0.0002 7 7 4.3937 3.2850 1.0575 8 6 4.8286 4.5160 0.8782 9 6 5.1548 5.4403 2.0228 10 7 3.9293 6.1140 2.4728 11 6 2.9851 5.1533 3.0576 12 6 1.6681 5.8628 3.3806 13 6 1.9372 7.0053 4.3638 14 6 2.9601 7.9657 3.7504 15 1 2.5495 8.4014 2.8395 16 6 3.2743 9.0622 4.7352 17 1 4.2864 9.1988 5.0864 18 6 2.2697 9.8909 5.1879 19 7 1.0372 9.7243 4.7606 20 14 2.6594 11.2506 6.4082 21 1 3.0112 12.4910 5.6716 22 1 1.4723 11.5028 7.2640 23 1 3.8045 10.8386 7.2593 24 6 4.2396 7.1953 3.4167 25 6 4.9565 4.8776 -0.4020 26 16 4.4745 3.5098 -1.4027 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.9500 -0.8401 0.0004 31 1 4.0096 0.6531 -0.8892 32 1 4.0089 0.6535 0.8908 33 1 5.5759 4.8638 2.8466 34 1 5.8790 6.1853 1.6933 35 1 2.7992 4.3482 2.3468 36 1 3.4084 4.7392 3.9726 37 1 1.2373 6.2653 2.4638 38 1 0.9730 5.1530 3.8290 39 1 1.0088 7.5406 4.5630 40 1 2.3307 6.5991 5.2955 41 1 0.3304 10.3076 5.0788 42 1 4.6570 6.7716 4.3301 43 1 4.9648 7.8733 2.9666 44 1 5.2996 5.8372 -0.7600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473635821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:49 Heat of formation + Delta-G solvation = -17.178656 kcal Electronic energy + Delta-G solvation = -25129.418703 eV Core-core repulsion = 21593.199058 eV Total energy + Delta-G solvation = -3536.219645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.28263 -40.47704 -39.41605 -35.74792 -35.59954 -34.10451 -32.96443 -31.70496 -30.26176 -27.71633 -27.43926 -26.89979 -24.53584 -23.50027 -22.86233 -21.51896 -20.66167 -20.40258 -18.81836 -18.37398 -18.28004 -17.08401 -16.90379 -16.53137 -16.49229 -16.10079 -15.52786 -15.27190 -15.16253 -14.98007 -14.56357 -14.44592 -14.30959 -13.98545 -13.89377 -13.78387 -13.44676 -13.06922 -12.95550 -12.86754 -12.80314 -12.55926 -12.45897 -12.29718 -11.86914 -11.75846 -11.42994 -11.13920 -10.96203 -10.69149 -10.59500 -10.39831 -10.25019 -10.13959 -9.69777 -9.17394 -8.07265 -6.22345 -0.23075 0.47655 0.77145 1.41793 1.42375 1.52895 1.59777 1.68651 2.34907 2.43719 3.02353 3.19363 3.24697 3.70954 3.98404 4.07834 4.17610 4.19447 4.31254 4.36510 4.39871 4.48867 4.54903 4.58073 4.59496 4.63145 4.71136 4.82492 4.85671 4.93955 4.97482 5.05772 5.14413 5.19716 5.31645 5.42654 5.48103 5.62481 5.92658 6.07918 6.17356 6.25729 6.43841 6.54147 6.83345 6.90264 7.26799 7.45642 8.97762 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.018088 B = 0.003007 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.636942 B = 9310.714296 C =10379.055481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.508 3.492 4 O -0.580 6.580 5 C -0.060 4.060 6 C 0.047 3.953 7 N -0.485 5.485 8 C 0.061 3.939 9 C 0.129 3.871 10 N -0.543 5.543 11 C 0.080 3.920 12 C -0.108 4.108 13 C -0.100 4.100 14 C 0.055 3.945 15 H -0.005 1.005 16 C -0.534 4.534 17 H 0.056 0.944 18 C 0.011 3.989 19 N -0.918 5.918 20 Si 0.959 3.041 21 H -0.275 1.275 22 H -0.284 1.284 23 H -0.267 1.267 24 C 0.082 3.918 25 C -0.245 4.245 26 S 0.163 5.837 27 H 0.115 0.885 28 H 0.039 0.961 29 H 0.048 0.952 30 H 0.424 0.576 31 H 0.158 0.842 32 H 0.144 0.856 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.020 0.980 37 H 0.040 0.960 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.024 0.976 41 H 0.260 0.740 42 H 0.019 0.981 43 H 0.068 0.932 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.942 -24.516 -13.980 29.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.293 3.707 4 O -0.459 6.459 5 C -0.103 4.103 6 C -0.232 4.232 7 N -0.200 5.200 8 C -0.071 4.071 9 C -0.001 4.001 10 N -0.268 5.268 11 C -0.048 4.048 12 C -0.146 4.146 13 C -0.138 4.138 14 C 0.036 3.964 15 H 0.013 0.987 16 C -0.572 4.572 17 H 0.074 0.926 18 C -0.188 4.188 19 N -0.557 5.557 20 Si 0.784 3.216 21 H -0.200 1.200 22 H -0.210 1.210 23 H -0.191 1.191 24 C -0.045 4.045 25 C -0.385 4.385 26 S 0.418 5.582 27 H 0.134 0.866 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.261 0.739 31 H 0.176 0.824 32 H 0.162 0.838 33 H 0.062 0.938 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.087 0.913 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.960 -23.942 -14.939 28.843 hybrid contribution 0.340 1.034 2.203 2.458 sum 6.300 -22.908 -12.736 26.957 Atomic orbital electron populations 1.21640 0.79091 1.04246 1.01035 1.45612 1.08143 1.08471 1.74910 1.20828 0.90422 0.83940 0.75506 1.90807 1.71283 1.33349 1.50480 1.20408 0.90979 0.89370 1.09525 1.26621 1.03370 1.01607 0.91578 1.65983 1.14578 1.06496 1.32954 1.20033 1.01389 0.90987 0.94647 1.20593 0.91818 0.94372 0.93296 1.61926 1.12612 1.11625 1.40593 1.21846 0.92591 0.93711 0.96656 1.21553 0.96540 0.97603 0.98874 1.21451 1.01590 0.94985 0.95787 1.18568 0.91317 0.92299 0.94248 0.98702 1.21504 0.94653 1.14950 1.26140 0.92551 1.25787 0.94866 0.99802 0.98302 1.70061 1.01043 1.39365 1.45273 0.85551 0.77720 0.79408 0.78925 1.20021 1.21016 1.19096 1.22027 0.98545 0.91820 0.92096 1.27087 1.10674 1.05107 0.95668 1.83435 1.59012 1.04553 1.11179 0.86621 0.94243 0.93305 0.73890 0.82401 0.83816 0.93775 0.87739 0.91128 0.96135 0.94131 0.92322 0.92289 0.95694 0.93102 0.96305 0.91309 0.79116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.04 10.70 127.77 1.37 2.41 16 2 N -0.72 -8.42 5.71 -484.51 -2.77 -11.19 16 3 C 0.51 10.30 7.82 87.66 0.69 10.99 16 4 O -0.58 -19.22 16.03 -3.04 -0.05 -19.27 16 5 C -0.06 -0.85 6.28 29.10 0.18 -0.67 16 6 C 0.05 1.12 5.88 88.52 0.52 1.64 16 7 N -0.48 -14.83 9.16 -179.40 -1.64 -16.47 16 8 C 0.06 1.90 5.58 41.52 0.23 2.13 16 9 C 0.13 4.28 5.41 85.55 0.46 4.74 16 10 N -0.54 -22.36 4.65 -900.93 -4.19 -26.55 16 11 C 0.08 3.39 5.28 86.33 0.46 3.85 16 12 C -0.11 -5.01 6.09 30.65 0.19 -4.83 16 13 C -0.10 -5.28 5.02 30.68 0.15 -5.13 16 14 C 0.05 2.96 2.26 -11.48 -0.03 2.94 16 15 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 16 C -0.53 -30.71 8.57 25.60 0.22 -30.49 16 17 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 18 C 0.01 0.63 5.30 84.65 0.45 1.08 16 19 N -0.92 -55.68 11.35 21.45 0.24 -55.44 16 20 Si 0.96 45.02 29.54 68.60 2.03 47.04 16 21 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C 0.08 3.72 4.68 86.33 0.40 4.12 16 25 C -0.25 -6.51 11.11 66.78 0.74 -5.77 16 26 S 0.16 3.51 23.18 -56.49 -1.31 2.20 16 27 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.67 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.42 1.15 8.83 -92.71 -0.82 0.33 16 31 H 0.16 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.14 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.04 1.45 8.12 -2.38 -0.02 1.43 16 34 H 0.10 3.00 7.94 -2.39 -0.02 2.99 16 35 H 0.07 3.03 6.12 -2.39 -0.01 3.01 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.06 3.47 6.15 -2.39 -0.01 3.46 16 40 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 2.94 8.01 -2.38 -0.02 2.92 16 44 H 0.19 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -79.97 369.80 -1.46 -81.43 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.19 Total: 11.22 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 6.04 Total: -12.98 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -8.35 Total: -109.65 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -0.05 Total: -19.27 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.31 Total: 2.20 kcal Total: -79.97 -1.46 -81.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473635821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.252 kcal (2) G-P(sol) polarization free energy of solvation -79.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds