Wall clock time and date at job start Tue Mar 31 2020 14:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33654 * 125.80109 * 2 1 4 4 C 1.34210 * 110.90996 * 180.02562 * 3 2 1 5 5 C 1.34182 * 109.12634 * 359.70586 * 4 3 2 6 6 C 1.36419 * 125.80288 * 180.02562 * 2 1 3 7 7 C 1.47379 * 127.19205 * 359.97438 * 6 2 1 8 8 O 1.21613 * 119.99913 * 0.02562 * 7 6 2 9 9 N 1.34770 * 120.00055 * 180.02562 * 7 6 2 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 14 14 C 1.53001 * 109.47049 * 64.99864 * 13 10 9 15 15 N 1.46898 * 109.46911 * 180.02562 * 14 13 10 16 16 C 1.46898 * 110.99940 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47330 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00114 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00180 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99795 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00277 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99403 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00401 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99451 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47406 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.46901 * 119.99974 * 24 22 20 27 27 H 1.48500 * 109.47036 * 239.99521 * 24 22 20 28 28 H 1.09005 * 109.46694 * 269.99208 * 1 2 3 29 29 H 1.09000 * 109.47316 * 29.99154 * 1 2 3 30 30 H 1.09001 * 109.47430 * 149.99743 * 1 2 3 31 31 H 1.08005 * 125.44037 * 180.02562 * 4 3 2 32 32 H 1.07997 * 127.02821 * 180.26731 * 5 4 3 33 33 H 0.97005 * 120.00370 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 37 37 H 1.08998 * 109.47192 * 185.00019 * 13 10 9 38 38 H 1.08998 * 109.46934 * 304.99865 * 13 10 9 39 39 H 1.08998 * 109.47250 * 300.00119 * 14 13 10 40 40 H 1.08998 * 109.47252 * 60.00195 * 14 13 10 41 41 H 1.00907 * 111.00010 * 303.95245 * 15 14 13 42 42 H 1.09011 * 109.47184 * 299.99820 * 16 15 14 43 43 H 1.09003 * 109.47492 * 59.99945 * 16 15 14 44 44 H 0.96999 * 119.99404 * 359.97438 * 19 17 16 45 45 H 0.97005 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5858 0.7391 -0.0006 5 6 3.6849 -0.5990 0.0056 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5158 -0.0006 8 8 0.6890 -2.7892 -0.0007 9 7 2.7930 -3.5015 -0.0006 10 6 2.3646 -4.9025 -0.0013 11 1 1.4531 -5.0039 0.5878 12 6 2.0958 -5.3529 -1.4386 13 6 3.4654 -5.7727 0.6085 14 6 3.6476 -5.4059 2.0827 15 7 4.7049 -6.2411 2.6679 16 6 4.9077 -5.9164 4.0861 17 6 5.9967 -6.7916 4.6511 18 8 6.5498 -7.6054 3.9420 19 7 6.3567 -6.6693 5.9442 20 6 7.3478 -7.4652 6.4580 21 1 7.8397 -8.1904 5.8267 22 6 7.7186 -7.3394 7.7912 23 7 7.1197 -6.4574 8.5594 24 14 9.0684 -8.4243 8.4914 25 1 9.5792 -9.3271 7.4288 26 1 10.1775 -7.5732 8.9926 27 1 8.5222 -9.2345 9.6097 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 4.4172 1.4286 -0.0003 32 1 4.5928 -1.1839 0.0108 33 1 3.7382 -3.2834 -0.0001 34 1 3.0073 -5.2514 -2.0277 35 1 1.7766 -6.3951 -1.4390 36 1 1.3115 -4.7329 -1.8730 37 1 3.1850 -6.8229 0.5274 38 1 4.4000 -5.6039 0.0738 39 1 3.9280 -4.3557 2.1638 40 1 2.7129 -5.5748 2.6174 41 1 4.4994 -7.2217 2.5476 42 1 5.1962 -4.8695 4.1816 43 1 3.9818 -6.0896 4.6346 44 1 5.9151 -6.0177 6.5110 45 1 7.3783 -6.3699 9.4902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497139977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:15 Heat of formation + Delta-G solvation = -70.827485 kcal Electronic energy + Delta-G solvation = -26258.757885 eV Core-core repulsion = 22277.458982 eV Total energy + Delta-G solvation = -3981.298904 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.88369 -39.83538 -38.31495 -36.92109 -34.99437 -33.83489 -33.44322 -32.30729 -31.47855 -31.18451 -29.25924 -27.23019 -26.23048 -24.31218 -23.74688 -22.29608 -21.71156 -20.69775 -20.11697 -19.22120 -18.22852 -17.87261 -16.68119 -16.58762 -16.11598 -16.06370 -15.53424 -15.06052 -14.83790 -14.52951 -14.37046 -13.92060 -13.74735 -13.71257 -13.60664 -13.46850 -13.27139 -13.19693 -13.06208 -12.68486 -12.26935 -12.22906 -12.06544 -11.66565 -11.50707 -11.25183 -11.24369 -11.05792 -10.91521 -10.34726 -10.22840 -10.15022 -10.13275 -9.52482 -9.30478 -8.87771 -8.47115 -8.06856 -7.96335 -6.42104 -3.82977 1.07180 1.73025 2.47131 3.02646 3.14471 3.15986 3.26513 3.33849 3.90380 4.04117 4.18076 4.25481 4.51097 4.53311 4.82353 4.85105 4.92943 4.96758 5.12697 5.18348 5.20629 5.24180 5.31959 5.33005 5.36934 5.49342 5.53316 5.60178 5.68312 5.80325 5.82119 5.93294 5.95009 5.95772 5.99989 6.09160 6.26769 6.34472 6.68547 7.20453 7.32892 7.55018 7.65603 8.03795 8.06209 8.60895 9.17533 9.54042 10.05374 10.75735 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.002090 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.720581 B =13396.373396 C =14517.224423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.078 3.922 3 O -0.177 6.177 4 C -0.038 4.038 5 C -0.188 4.188 6 C -0.248 4.248 7 C 0.592 3.408 8 O -0.545 6.545 9 N -0.715 5.715 10 C 0.144 3.856 11 H 0.089 0.911 12 C -0.162 4.162 13 C -0.125 4.125 14 C 0.059 3.941 15 N -0.669 5.669 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.109 0.891 31 H 0.208 0.792 32 H 0.158 0.842 33 H 0.402 0.598 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.349 0.651 42 H 0.085 0.915 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.173 13.961 -18.217 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.025 3.975 3 O -0.073 6.073 4 C -0.104 4.104 5 C -0.207 4.207 6 C -0.253 4.253 7 C 0.381 3.619 8 O -0.424 6.424 9 N -0.367 5.367 10 C 0.040 3.960 11 H 0.107 0.893 12 C -0.220 4.220 13 C -0.164 4.164 14 C -0.071 4.071 15 N -0.302 5.302 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.127 0.873 31 H 0.225 0.775 32 H 0.176 0.824 33 H 0.237 0.763 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.045 0.955 41 H 0.168 0.832 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.186 13.922 -18.696 26.303 hybrid contribution 0.473 -0.421 1.317 1.462 sum -11.713 13.500 -17.379 24.930 Atomic orbital electron populations 1.20619 0.83757 1.05017 1.04508 1.22843 0.94153 0.83149 0.97385 1.83776 1.17237 1.34997 1.71306 1.23884 0.83466 0.96481 1.06543 1.22908 0.96682 0.94628 1.06460 1.21169 0.93375 0.93905 1.16831 1.17171 0.85461 0.83735 0.75560 1.90747 1.16598 1.84085 1.51007 1.45911 1.09776 1.05876 1.75119 1.20989 0.98497 0.79581 0.96966 0.89275 1.22161 1.02066 1.01690 0.96093 1.21878 0.98767 0.99923 0.95804 1.21963 0.92753 0.98419 0.93953 1.60101 1.45177 1.09921 1.14964 1.21667 0.97581 1.00390 0.88588 1.19817 0.87104 0.87314 0.83121 1.90518 1.57574 1.39638 1.59045 1.41881 1.34286 1.35363 1.08572 1.19758 1.12646 1.16184 0.94226 0.87854 1.25271 0.98975 0.97653 0.96122 1.69621 1.42404 1.34839 1.07465 0.85798 0.80148 0.79538 0.78850 1.19206 1.20739 1.20765 0.89254 0.90442 0.87283 0.77495 0.82424 0.76345 0.92340 0.91442 0.92152 0.90115 0.90207 0.91200 0.95508 0.83209 0.89704 0.93914 0.77460 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.89 36.00 0.36 -0.28 16 2 C 0.08 0.76 7.37 -34.97 -0.26 0.50 16 3 O -0.18 -1.61 10.52 7.66 0.08 -1.53 16 4 C -0.04 -0.27 12.03 29.30 0.35 0.08 16 5 C -0.19 -1.52 10.60 -37.45 -0.40 -1.91 16 6 C -0.25 -2.56 6.31 -103.27 -0.65 -3.21 16 7 C 0.59 6.75 7.78 -12.54 -0.10 6.66 16 8 O -0.54 -7.51 14.51 5.27 0.08 -7.43 16 9 N -0.72 -6.73 4.53 -54.89 -0.25 -6.98 16 10 C 0.14 1.36 2.57 -67.93 -0.17 1.18 16 11 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 12 C -0.16 -1.37 9.48 37.16 0.35 -1.02 16 13 C -0.13 -1.21 5.01 -26.73 -0.13 -1.35 16 14 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 15 N -0.67 -10.67 6.13 -115.06 -0.70 -11.38 16 16 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 17 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 18 O -0.58 -15.92 15.78 5.55 0.09 -15.83 16 19 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.11 0.96 6.48 -51.93 -0.34 0.62 16 31 H 0.21 0.70 8.06 -52.48 -0.42 0.28 16 32 H 0.16 0.94 7.74 -52.49 -0.41 0.54 16 33 H 0.40 3.16 7.77 -40.82 -0.32 2.84 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.84 7.75 -51.93 -0.40 0.43 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.35 5.72 8.43 -39.29 -0.33 5.38 16 42 H 0.08 1.41 8.14 -51.92 -0.42 0.99 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.65 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -34.00 385.06 -6.96 -40.97 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -6.67 Total: 14.18 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.03 Total: 4.57 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: -0.29 Total: -56.79 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: 0.24 Total: -24.79 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.00 -6.96 -40.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497139977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.860 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds