Wall clock time and date at job start Tue Mar 31 2020 14:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33654 * 125.80109 * 2 1 4 4 C 1.34210 * 110.90996 * 180.02562 * 3 2 1 5 5 C 1.34182 * 109.12634 * 359.70586 * 4 3 2 6 6 C 1.36419 * 125.80288 * 180.02562 * 2 1 3 7 7 C 1.47379 * 127.19205 * 359.97438 * 6 2 1 8 8 O 1.21613 * 119.99913 * 0.02562 * 7 6 2 9 9 N 1.34770 * 120.00055 * 180.02562 * 7 6 2 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 14 14 C 1.53001 * 109.47049 * 64.99864 * 13 10 9 15 15 N 1.46898 * 109.46911 * 180.02562 * 14 13 10 16 16 C 1.46898 * 110.99940 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47330 * 179.97438 * 16 15 14 18 18 O 1.21291 * 120.00114 * 0.02562 * 17 16 15 19 19 N 1.34783 * 120.00180 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99795 * 180.02562 * 19 17 16 21 21 H 1.07998 * 120.00277 * 359.97438 * 20 19 17 22 22 C 1.38954 * 119.99403 * 180.02562 * 20 19 17 23 23 N 1.31404 * 120.00401 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99451 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47406 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.46901 * 119.99974 * 24 22 20 27 27 H 1.48500 * 109.47036 * 239.99521 * 24 22 20 28 28 H 1.09005 * 109.46694 * 269.99208 * 1 2 3 29 29 H 1.09000 * 109.47316 * 29.99154 * 1 2 3 30 30 H 1.09001 * 109.47430 * 149.99743 * 1 2 3 31 31 H 1.08005 * 125.44037 * 180.02562 * 4 3 2 32 32 H 1.07997 * 127.02821 * 180.26731 * 5 4 3 33 33 H 0.97005 * 120.00370 * 0.02562 * 9 7 6 34 34 H 1.09001 * 109.47002 * 60.00085 * 12 10 9 35 35 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 37 37 H 1.08998 * 109.47192 * 185.00019 * 13 10 9 38 38 H 1.08998 * 109.46934 * 304.99865 * 13 10 9 39 39 H 1.08998 * 109.47250 * 300.00119 * 14 13 10 40 40 H 1.08998 * 109.47252 * 60.00195 * 14 13 10 41 41 H 1.00907 * 111.00010 * 303.95245 * 15 14 13 42 42 H 1.09011 * 109.47184 * 299.99820 * 16 15 14 43 43 H 1.09003 * 109.47492 * 59.99945 * 16 15 14 44 44 H 0.96999 * 119.99404 * 359.97438 * 19 17 16 45 45 H 0.97005 * 120.00119 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2888 1.0840 0.0000 4 6 3.5858 0.7391 -0.0006 5 6 3.6849 -0.5990 0.0056 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5158 -0.0006 8 8 0.6890 -2.7892 -0.0007 9 7 2.7930 -3.5015 -0.0006 10 6 2.3646 -4.9025 -0.0013 11 1 1.4531 -5.0039 0.5878 12 6 2.0958 -5.3529 -1.4386 13 6 3.4654 -5.7727 0.6085 14 6 3.6476 -5.4059 2.0827 15 7 4.7049 -6.2411 2.6679 16 6 4.9077 -5.9164 4.0861 17 6 5.9967 -6.7916 4.6511 18 8 6.5498 -7.6054 3.9420 19 7 6.3567 -6.6693 5.9442 20 6 7.3478 -7.4652 6.4580 21 1 7.8397 -8.1904 5.8267 22 6 7.7186 -7.3394 7.7912 23 7 7.1197 -6.4574 8.5594 24 14 9.0684 -8.4243 8.4914 25 1 9.5792 -9.3271 7.4288 26 1 10.1775 -7.5732 8.9926 27 1 8.5222 -9.2345 9.6097 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8900 -0.5139 31 1 4.4172 1.4286 -0.0003 32 1 4.5928 -1.1839 0.0108 33 1 3.7382 -3.2834 -0.0001 34 1 3.0073 -5.2514 -2.0277 35 1 1.7766 -6.3951 -1.4390 36 1 1.3115 -4.7329 -1.8730 37 1 3.1850 -6.8229 0.5274 38 1 4.4000 -5.6039 0.0738 39 1 3.9280 -4.3557 2.1638 40 1 2.7129 -5.5748 2.6174 41 1 4.4994 -7.2217 2.5476 42 1 5.1962 -4.8695 4.1816 43 1 3.9818 -6.0896 4.6346 44 1 5.9151 -6.0177 6.5110 45 1 7.3783 -6.3699 9.4902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497139977.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:14 Heat of formation + Delta-G solvation = -96.273577 kcal Electronic energy + Delta-G solvation = -26259.861311 eV Core-core repulsion = 22277.458982 eV Total energy + Delta-G solvation = -3982.402329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.52434 -40.68838 -40.15219 -37.94703 -36.30081 -35.70418 -34.16492 -33.29414 -32.94964 -32.24629 -30.32023 -27.87767 -27.76913 -25.83990 -24.67525 -23.26780 -22.46455 -21.50615 -21.13031 -20.75508 -19.91254 -18.88736 -17.85609 -17.43662 -17.31495 -16.96925 -16.78788 -16.46193 -15.97250 -15.83394 -15.55967 -15.37795 -15.07170 -14.81263 -14.45825 -14.37977 -14.06975 -13.85580 -13.82999 -13.75938 -13.57614 -13.50226 -13.19712 -12.93423 -12.80167 -12.67145 -12.41964 -12.22170 -12.12128 -12.10808 -11.77821 -11.52152 -11.01377 -10.83027 -10.36914 -10.10578 -10.02819 -9.51705 -9.36338 -8.47618 -5.96560 0.33944 1.13731 1.36466 1.41904 1.56307 1.85583 2.03443 2.28524 2.28874 2.33979 2.87285 3.19544 3.47444 3.61920 3.79312 3.90645 3.95464 4.06101 4.09946 4.31370 4.37139 4.42202 4.49126 4.52045 4.60668 4.62010 4.64356 4.67599 4.75514 4.82322 4.90093 4.92115 5.07343 5.20119 5.22371 5.32165 5.38419 5.40512 5.56543 5.87002 6.04799 6.08142 6.38922 6.56582 6.58655 7.11462 7.22750 7.54722 8.09605 8.70071 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.002090 C = 0.001928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.720581 B =13396.373396 C =14517.224423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.065 3.935 3 O -0.184 6.184 4 C -0.033 4.033 5 C -0.199 4.199 6 C -0.272 4.272 7 C 0.588 3.412 8 O -0.576 6.576 9 N -0.707 5.707 10 C 0.149 3.851 11 H 0.074 0.926 12 C -0.156 4.156 13 C -0.114 4.114 14 C 0.062 3.938 15 N -0.679 5.679 16 C 0.064 3.936 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.271 1.271 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.245 0.755 32 H 0.177 0.823 33 H 0.410 0.590 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.029 0.971 41 H 0.345 0.655 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 14.782 -18.361 26.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 O -0.080 6.080 4 C -0.098 4.098 5 C -0.218 4.218 6 C -0.276 4.276 7 C 0.377 3.623 8 O -0.458 6.458 9 N -0.358 5.358 10 C 0.045 3.955 11 H 0.092 0.908 12 C -0.214 4.214 13 C -0.152 4.152 14 C -0.067 4.067 15 N -0.311 5.311 16 C -0.069 4.069 17 C 0.226 3.774 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.196 1.196 28 H 0.111 0.889 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.261 0.739 32 H 0.194 0.806 33 H 0.247 0.753 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.164 0.836 42 H 0.120 0.880 43 H 0.080 0.920 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.626 14.767 -18.842 26.613 hybrid contribution 0.289 -0.641 1.322 1.497 sum -11.337 14.126 -17.520 25.199 Atomic orbital electron populations 1.20616 0.82975 1.05270 1.04823 1.23168 0.94976 0.83338 0.97396 1.83789 1.18092 1.34856 1.71278 1.24658 0.83432 0.97008 1.04688 1.23176 0.96324 0.95276 1.06976 1.21309 0.94903 0.93450 1.17965 1.17412 0.85227 0.84520 0.75138 1.90725 1.17867 1.84629 1.52629 1.45859 1.10025 1.05616 1.74314 1.20915 0.97715 0.79532 0.97372 0.90794 1.22103 1.02020 1.02048 0.95258 1.21776 0.98955 1.00356 0.94105 1.22017 0.91631 0.97910 0.95111 1.60115 1.47078 1.10224 1.13707 1.21530 0.95935 0.99639 0.89756 1.20845 0.87386 0.86959 0.82239 1.90486 1.59154 1.41390 1.59804 1.41956 1.34268 1.35446 1.09428 1.19715 1.14357 1.17262 0.94918 0.90221 1.26069 1.00801 0.98685 0.95843 1.69679 1.43173 1.35449 1.07919 0.84855 0.77536 0.77873 0.77976 1.19699 1.19574 1.19610 0.88853 0.88416 0.88732 0.73875 0.80584 0.75313 0.91414 0.90282 0.93585 0.89331 0.89770 0.90792 0.95281 0.83626 0.87964 0.92006 0.77016 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 9.89 71.23 0.70 -0.53 16 2 C 0.06 1.23 7.37 25.26 0.19 1.41 16 3 O -0.18 -3.11 10.52 4.50 0.05 -3.07 16 4 C -0.03 -0.40 12.03 66.89 0.80 0.40 16 5 C -0.20 -2.89 10.60 23.65 0.25 -2.64 16 6 C -0.27 -5.46 6.31 -18.99 -0.12 -5.58 16 7 C 0.59 13.34 7.78 86.65 0.67 14.02 16 8 O -0.58 -16.26 14.51 -4.07 -0.06 -16.32 16 9 N -0.71 -12.66 4.53 -445.84 -2.02 -14.68 16 10 C 0.15 2.66 2.57 44.99 0.12 2.77 16 11 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 12 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 13 C -0.11 -2.00 5.01 30.59 0.15 -1.85 16 14 C 0.06 1.39 5.57 86.30 0.48 1.88 16 15 N -0.68 -20.71 6.13 -517.93 -3.17 -23.88 16 16 C 0.06 2.20 6.17 85.56 0.53 2.73 16 17 C 0.44 20.89 7.82 87.65 0.69 21.57 16 18 O -0.62 -34.37 15.78 -3.06 -0.05 -34.42 16 19 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 20 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 23 N -0.92 -49.84 13.05 21.66 0.28 -49.56 16 24 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.74 6.48 -2.39 -0.02 1.72 16 31 H 0.25 0.84 8.06 -2.91 -0.02 0.82 16 32 H 0.18 1.73 7.74 -2.91 -0.02 1.70 16 33 H 0.41 5.84 7.77 -92.70 -0.72 5.12 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.04 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.61 7.75 -2.39 -0.02 1.59 16 40 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.35 10.98 8.43 -89.69 -0.76 10.23 16 42 H 0.10 3.19 8.14 -2.38 -0.02 3.17 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.40 19.43 7.90 -92.71 -0.73 18.70 16 45 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -73.84 385.06 0.69 -73.15 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -1.17 Total: 41.16 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.43 Total: 13.94 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -6.53 Total: -119.33 kcal Atomic # 8 Polarization: -53.75 SS G_CDS: -0.06 Total: -53.81 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.84 0.69 -73.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497139977.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.122 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds