Wall clock time and date at job start Tue Mar 31 2020 14:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33648 * 125.80548 * 2 1 4 4 C 1.34214 * 110.91281 * 179.73475 * 3 2 1 5 5 C 1.34177 * 109.12202 * 0.45134 * 4 3 2 6 6 C 1.36414 * 125.79801 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19599 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99610 * 359.97044 * 7 6 2 9 9 N 1.34783 * 120.00408 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99950 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47583 * 34.99186 * 10 9 7 12 12 C 1.53006 * 109.47070 * 274.99370 * 10 9 7 13 13 C 1.53005 * 109.47179 * 155.00036 * 10 9 7 14 14 C 1.53001 * 109.46429 * 294.99663 * 13 10 9 15 15 N 1.46905 * 109.47116 * 180.02562 * 14 13 10 16 16 C 1.46898 * 111.00118 * 179.97438 * 15 14 13 17 17 C 1.50709 * 109.46744 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99850 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99484 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99615 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00304 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99865 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00018 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46762 * 90.00407 * 24 22 20 26 26 H 1.48501 * 109.47582 * 210.00064 * 24 22 20 27 27 H 1.48498 * 109.47136 * 330.00506 * 24 22 20 28 28 H 1.09001 * 109.46861 * 269.99620 * 1 2 3 29 29 H 1.08999 * 109.47154 * 29.99168 * 1 2 3 30 30 H 1.08995 * 109.47634 * 149.99949 * 1 2 3 31 31 H 1.08002 * 125.43915 * 180.28813 * 4 3 2 32 32 H 1.08002 * 127.02647 * 179.84063 * 5 4 3 33 33 H 0.97001 * 119.99484 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47193 * 300.00446 * 12 10 9 35 35 H 1.08998 * 109.46997 * 59.99991 * 12 10 9 36 36 H 1.08993 * 109.47392 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47241 * 54.99172 * 13 10 9 38 38 H 1.08996 * 109.47273 * 174.99965 * 13 10 9 39 39 H 1.09004 * 109.47456 * 299.99546 * 14 13 10 40 40 H 1.08997 * 109.47669 * 60.00192 * 14 13 10 41 41 H 1.00905 * 110.99558 * 303.95553 * 15 14 13 42 42 H 1.08999 * 109.47241 * 299.99356 * 16 15 14 43 43 H 1.08995 * 109.47248 * 60.00292 * 16 15 14 44 44 H 0.97000 * 120.00221 * 0.02562 * 19 17 16 45 45 H 0.96998 * 120.00002 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0002 6 6 2.3049 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0006 8 8 0.6889 -2.7891 0.0003 9 7 2.7929 -3.5016 -0.0016 10 6 2.3644 -4.9025 -0.0023 11 1 1.4528 -5.0033 -0.5912 12 6 2.0958 -5.3543 1.4346 13 6 3.4651 -5.7723 -0.6130 14 6 3.6471 -5.4040 -2.0868 15 7 4.7035 -6.2395 -2.6735 16 6 4.9060 -5.9134 -4.0914 17 6 5.9950 -6.7882 -4.6573 18 8 6.5481 -7.6026 -3.9490 19 7 6.3541 -6.6653 -5.9506 20 6 7.3451 -7.4607 -6.4653 21 1 7.8376 -8.1860 -5.8347 22 6 7.7149 -7.3345 -7.7987 23 7 7.1152 -6.4523 -8.5663 24 14 9.0656 -8.4177 -8.4999 25 1 8.4687 -9.6649 -9.0415 26 1 9.7675 -7.6915 -9.5886 27 1 10.0343 -8.7579 -7.4270 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.4172 1.4284 0.0115 32 1 4.5928 -1.1841 -0.0002 33 1 3.7381 -3.2835 -0.0027 34 1 3.0073 -5.2535 2.0236 35 1 1.3117 -4.7347 1.8697 36 1 1.7773 -6.3967 1.4342 37 1 4.3999 -5.6039 -0.0783 38 1 3.1847 -6.8225 -0.5329 39 1 2.7123 -5.5723 -2.6216 40 1 3.9275 -4.3538 -2.1670 41 1 5.5645 -6.1505 -2.1550 42 1 3.9798 -6.0852 -4.6397 43 1 5.1954 -4.8668 -4.1858 44 1 5.9119 -6.0137 -6.5169 45 1 7.3731 -6.3645 -9.4972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497139980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:18 Heat of formation + Delta-G solvation = -70.515831 kcal Electronic energy + Delta-G solvation = -26265.443269 eV Core-core repulsion = 22284.157879 eV Total energy + Delta-G solvation = -3981.285389 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.91265 -39.85291 -38.31446 -36.93041 -34.99353 -33.83375 -33.46885 -32.32800 -31.49335 -31.18664 -29.25800 -27.25312 -26.22879 -24.31682 -23.76605 -22.30246 -21.72403 -20.73579 -20.13029 -19.21917 -18.24898 -17.87869 -16.69870 -16.56806 -16.17639 -16.07507 -15.51099 -15.08653 -14.74079 -14.66705 -14.39331 -13.93364 -13.78257 -13.73912 -13.59282 -13.44225 -13.26266 -13.22718 -13.06912 -12.67561 -12.24746 -12.20551 -12.08105 -11.69229 -11.51934 -11.31511 -11.13307 -11.04791 -10.94507 -10.39788 -10.22091 -10.17777 -10.15225 -9.51229 -9.33375 -8.90497 -8.46300 -8.06118 -7.96106 -6.41888 -3.82863 1.04891 1.69668 2.44509 3.00598 3.12427 3.17733 3.26255 3.32006 3.90535 4.04284 4.15232 4.25560 4.48211 4.50450 4.78865 4.83037 4.92071 4.99069 5.15149 5.17136 5.19034 5.24332 5.27677 5.30972 5.37064 5.47609 5.53110 5.55696 5.75389 5.78421 5.81122 5.92022 5.92578 5.96128 6.01507 6.08285 6.27016 6.33922 6.65778 7.20715 7.29873 7.54977 7.65910 8.01727 8.06134 8.61028 9.17557 9.54130 10.05509 10.75888 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.002089 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.211104 B =13399.205909 C =14510.766577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.079 3.921 3 O -0.177 6.177 4 C -0.038 4.038 5 C -0.189 4.189 6 C -0.249 4.249 7 C 0.592 3.408 8 O -0.543 6.543 9 N -0.716 5.716 10 C 0.144 3.856 11 H 0.092 0.908 12 C -0.161 4.161 13 C -0.125 4.125 14 C 0.059 3.941 15 N -0.669 5.669 16 C 0.051 3.949 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.208 0.792 32 H 0.157 0.843 33 H 0.399 0.601 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.026 0.974 41 H 0.348 0.652 42 H 0.086 0.914 43 H 0.042 0.958 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.010 15.178 18.620 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.025 3.975 3 O -0.073 6.073 4 C -0.103 4.103 5 C -0.208 4.208 6 C -0.253 4.253 7 C 0.381 3.619 8 O -0.423 6.423 9 N -0.368 5.368 10 C 0.039 3.961 11 H 0.110 0.890 12 C -0.220 4.220 13 C -0.163 4.163 14 C -0.070 4.070 15 N -0.301 5.301 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.194 1.194 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.225 0.775 32 H 0.174 0.826 33 H 0.234 0.766 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.089 0.911 40 H 0.044 0.956 41 H 0.167 0.833 42 H 0.104 0.896 43 H 0.060 0.940 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.953 14.213 18.746 26.387 hybrid contribution 1.706 0.795 -0.813 2.050 sum -10.248 15.008 17.933 25.531 Atomic orbital electron populations 1.20624 0.83708 1.05199 1.04390 1.22853 0.94174 0.83125 0.97301 1.83778 1.17216 1.35012 1.71285 1.23879 0.83499 0.96456 1.06487 1.22885 0.96648 0.94632 1.06622 1.21174 0.93342 0.93947 1.16844 1.17170 0.85484 0.83710 0.75583 1.90752 1.16556 1.84067 1.50883 1.45922 1.09623 1.05997 1.75223 1.21008 0.98694 0.79349 0.97021 0.89044 1.22157 1.01989 1.01813 0.96027 1.21885 0.98288 1.00887 0.95252 1.21969 0.96375 0.94277 0.94414 1.60063 1.11717 1.56329 1.02031 1.21666 0.99472 0.97079 0.89967 1.19817 0.86727 0.87462 0.83367 1.90517 1.57548 1.39424 1.59305 1.41873 1.34258 1.35334 1.08602 1.19707 1.12629 1.16275 0.94267 0.87913 1.25271 0.98995 0.97623 0.96108 1.69617 1.42461 1.34766 1.07504 0.85851 0.80435 0.79421 0.78542 1.20367 1.20943 1.19427 0.89341 0.90358 0.87200 0.77506 0.82558 0.76610 0.92482 0.92155 0.91298 0.91360 0.89005 0.91057 0.95633 0.83321 0.89624 0.93999 0.77452 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 9.89 36.01 0.36 -0.27 16 2 C 0.08 0.75 7.37 -34.97 -0.26 0.50 16 3 O -0.18 -1.59 10.52 7.67 0.08 -1.51 16 4 C -0.04 -0.26 12.03 29.30 0.35 0.09 16 5 C -0.19 -1.48 10.60 -37.45 -0.40 -1.88 16 6 C -0.25 -2.52 6.31 -103.27 -0.65 -3.18 16 7 C 0.59 6.69 7.78 -12.54 -0.10 6.59 16 8 O -0.54 -7.45 14.51 5.26 0.08 -7.38 16 9 N -0.72 -6.61 4.53 -54.90 -0.25 -6.85 16 10 C 0.14 1.35 2.57 -67.93 -0.17 1.17 16 11 H 0.09 1.00 7.58 -51.93 -0.39 0.61 16 12 C -0.16 -1.38 9.48 37.16 0.35 -1.02 16 13 C -0.12 -1.21 5.01 -26.73 -0.13 -1.34 16 14 C 0.06 0.71 5.57 -3.82 -0.02 0.69 16 15 N -0.67 -10.67 6.13 -115.05 -0.70 -11.38 16 16 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 17 C 0.44 10.50 7.82 -10.98 -0.09 10.41 16 18 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 19 N -0.56 -14.43 5.29 -10.96 -0.06 -14.48 16 20 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.11 0.98 6.48 -51.93 -0.34 0.65 16 31 H 0.21 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.16 0.88 7.74 -52.49 -0.41 0.48 16 33 H 0.40 2.99 7.77 -40.82 -0.32 2.67 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.03 0.29 7.75 -51.93 -0.40 -0.11 16 41 H 0.35 5.61 8.43 -39.29 -0.33 5.27 16 42 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 385.06 15.07 5.80 5.80 Total: -1.00 -34.07 385.06 -6.96 -41.04 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -6.67 Total: 13.89 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.03 Total: 4.58 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.29 Total: -56.67 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.24 Total: -24.72 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.07 -6.96 -41.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497139980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.480 kcal (2) G-P(sol) polarization free energy of solvation -34.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds