Wall clock time and date at job start Tue Mar 31 2020 14:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33648 * 125.80548 * 2 1 4 4 C 1.34214 * 110.91281 * 179.73475 * 3 2 1 5 5 C 1.34177 * 109.12202 * 0.45134 * 4 3 2 6 6 C 1.36414 * 125.79801 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19599 * 359.97438 * 6 2 1 8 8 O 1.21616 * 119.99610 * 359.97044 * 7 6 2 9 9 N 1.34783 * 120.00408 * 179.97438 * 7 6 2 10 10 C 1.46491 * 119.99950 * 180.02562 * 9 7 6 11 11 H 1.08996 * 109.47583 * 34.99186 * 10 9 7 12 12 C 1.53006 * 109.47070 * 274.99370 * 10 9 7 13 13 C 1.53005 * 109.47179 * 155.00036 * 10 9 7 14 14 C 1.53001 * 109.46429 * 294.99663 * 13 10 9 15 15 N 1.46905 * 109.47116 * 180.02562 * 14 13 10 16 16 C 1.46898 * 111.00118 * 179.97438 * 15 14 13 17 17 C 1.50709 * 109.46744 * 179.97438 * 16 15 14 18 18 O 1.21290 * 119.99850 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99484 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99615 * 179.97438 * 19 17 16 21 21 H 1.07994 * 120.00304 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99865 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00018 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00100 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46762 * 90.00407 * 24 22 20 26 26 H 1.48501 * 109.47582 * 210.00064 * 24 22 20 27 27 H 1.48498 * 109.47136 * 330.00506 * 24 22 20 28 28 H 1.09001 * 109.46861 * 269.99620 * 1 2 3 29 29 H 1.08999 * 109.47154 * 29.99168 * 1 2 3 30 30 H 1.08995 * 109.47634 * 149.99949 * 1 2 3 31 31 H 1.08002 * 125.43915 * 180.28813 * 4 3 2 32 32 H 1.08002 * 127.02647 * 179.84063 * 5 4 3 33 33 H 0.97001 * 119.99484 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47193 * 300.00446 * 12 10 9 35 35 H 1.08998 * 109.46997 * 59.99991 * 12 10 9 36 36 H 1.08993 * 109.47392 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47241 * 54.99172 * 13 10 9 38 38 H 1.08996 * 109.47273 * 174.99965 * 13 10 9 39 39 H 1.09004 * 109.47456 * 299.99546 * 14 13 10 40 40 H 1.08997 * 109.47669 * 60.00192 * 14 13 10 41 41 H 1.00905 * 110.99558 * 303.95553 * 15 14 13 42 42 H 1.08999 * 109.47241 * 299.99356 * 16 15 14 43 43 H 1.08995 * 109.47248 * 60.00292 * 16 15 14 44 44 H 0.97000 * 120.00221 * 0.02562 * 19 17 16 45 45 H 0.96998 * 120.00002 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0002 6 6 2.3049 -1.1064 -0.0005 7 6 1.8739 -2.5157 -0.0006 8 8 0.6889 -2.7891 0.0003 9 7 2.7929 -3.5016 -0.0016 10 6 2.3644 -4.9025 -0.0023 11 1 1.4528 -5.0033 -0.5912 12 6 2.0958 -5.3543 1.4346 13 6 3.4651 -5.7723 -0.6130 14 6 3.6471 -5.4040 -2.0868 15 7 4.7035 -6.2395 -2.6735 16 6 4.9060 -5.9134 -4.0914 17 6 5.9950 -6.7882 -4.6573 18 8 6.5481 -7.6026 -3.9490 19 7 6.3541 -6.6653 -5.9506 20 6 7.3451 -7.4607 -6.4653 21 1 7.8376 -8.1860 -5.8347 22 6 7.7149 -7.3345 -7.7987 23 7 7.1152 -6.4523 -8.5663 24 14 9.0656 -8.4177 -8.4999 25 1 8.4687 -9.6649 -9.0415 26 1 9.7675 -7.6915 -9.5886 27 1 10.0343 -8.7579 -7.4270 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.4172 1.4284 0.0115 32 1 4.5928 -1.1841 -0.0002 33 1 3.7381 -3.2835 -0.0027 34 1 3.0073 -5.2535 2.0236 35 1 1.3117 -4.7347 1.8697 36 1 1.7773 -6.3967 1.4342 37 1 4.3999 -5.6039 -0.0783 38 1 3.1847 -6.8225 -0.5329 39 1 2.7123 -5.5723 -2.6216 40 1 3.9275 -4.3538 -2.1670 41 1 5.5645 -6.1505 -2.1550 42 1 3.9798 -6.0852 -4.6397 43 1 5.1954 -4.8668 -4.1858 44 1 5.9119 -6.0137 -6.5169 45 1 7.3731 -6.3645 -9.4972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497139980.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:17 Heat of formation + Delta-G solvation = -96.072505 kcal Electronic energy + Delta-G solvation = -26266.551489 eV Core-core repulsion = 22284.157879 eV Total energy + Delta-G solvation = -3982.393610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.53752 -40.69768 -40.15043 -37.95320 -36.29878 -35.70131 -34.17736 -33.29236 -32.95796 -32.25505 -30.31987 -27.88393 -27.77175 -25.83724 -24.69127 -23.26487 -22.47237 -21.54446 -21.11270 -20.76610 -19.91059 -18.89472 -17.84860 -17.45013 -17.32599 -16.97044 -16.75896 -16.47751 -15.98696 -15.83980 -15.57900 -15.25592 -15.18377 -14.94283 -14.43242 -14.27614 -14.09678 -13.84440 -13.83801 -13.75305 -13.56339 -13.48307 -13.22512 -12.92737 -12.79661 -12.68340 -12.42942 -12.26769 -12.13313 -12.04835 -11.80004 -11.51345 -11.02147 -10.84415 -10.37584 -10.11664 -10.02758 -9.52964 -9.33437 -8.47367 -5.96436 0.33003 1.12360 1.38029 1.41883 1.54752 1.84392 2.03712 2.27704 2.28734 2.33042 2.87659 3.19807 3.48221 3.60622 3.77819 3.89154 3.91550 4.04044 4.20012 4.29912 4.36145 4.43202 4.45898 4.52253 4.60364 4.61024 4.62881 4.67644 4.74394 4.80953 4.89779 4.95295 5.09461 5.18942 5.21632 5.31977 5.37119 5.40373 5.56295 5.87395 6.03620 6.08534 6.42103 6.55438 6.58797 7.11454 7.22072 7.54866 8.09729 8.70104 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015894 B = 0.002089 C = 0.001929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.211104 B =13399.205909 C =14510.766577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.065 3.935 3 O -0.184 6.184 4 C -0.033 4.033 5 C -0.199 4.199 6 C -0.272 4.272 7 C 0.587 3.413 8 O -0.576 6.576 9 N -0.707 5.707 10 C 0.149 3.851 11 H 0.074 0.926 12 C -0.156 4.156 13 C -0.113 4.113 14 C 0.063 3.937 15 N -0.681 5.681 16 C 0.065 3.935 17 C 0.438 3.562 18 O -0.622 6.622 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.080 0.920 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.245 0.755 32 H 0.177 0.823 33 H 0.410 0.590 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.347 0.653 42 H 0.099 0.901 43 H 0.065 0.935 44 H 0.396 0.604 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 16.130 18.893 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 O -0.080 6.080 4 C -0.098 4.098 5 C -0.218 4.218 6 C -0.276 4.276 7 C 0.377 3.623 8 O -0.458 6.458 9 N -0.358 5.358 10 C 0.045 3.955 11 H 0.092 0.908 12 C -0.214 4.214 13 C -0.151 4.151 14 C -0.066 4.066 15 N -0.314 5.314 16 C -0.068 4.068 17 C 0.225 3.775 18 O -0.508 6.508 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.261 0.739 32 H 0.195 0.805 33 H 0.246 0.754 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.055 0.945 41 H 0.165 0.835 42 H 0.117 0.883 43 H 0.083 0.917 44 H 0.230 0.770 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.187 15.185 19.021 26.787 hybrid contribution 1.452 0.532 -0.857 1.768 sum -9.735 15.717 18.163 25.917 Atomic orbital electron populations 1.20618 0.82989 1.05179 1.04932 1.23169 0.94980 0.83346 0.97357 1.83790 1.18102 1.34866 1.71269 1.24662 0.83439 0.97021 1.04660 1.23167 0.96288 0.95258 1.07048 1.21309 0.94920 0.93435 1.17984 1.17421 0.85247 0.84524 0.75151 1.90730 1.17888 1.84625 1.52528 1.45846 1.09947 1.05612 1.74403 1.20910 0.97856 0.79411 0.97362 0.90782 1.22099 1.02038 1.02014 0.95255 1.21771 0.98927 1.00679 0.93744 1.22005 0.94780 0.94304 0.95492 1.60053 1.12451 1.57827 1.01072 1.21520 0.97508 0.96698 0.91068 1.20849 0.86980 0.87134 0.82487 1.90485 1.59111 1.41188 1.60064 1.41951 1.34240 1.35425 1.09463 1.19681 1.14321 1.17360 0.94975 0.90207 1.26071 1.00832 0.98648 0.95832 1.69677 1.43239 1.35383 1.07924 0.84912 0.77621 0.77882 0.77832 1.19701 1.19510 1.19614 0.88499 0.88573 0.88915 0.73871 0.80538 0.75403 0.91347 0.93594 0.90387 0.89948 0.89226 0.91530 0.94492 0.83456 0.88315 0.91679 0.77014 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 9.89 71.24 0.70 -0.52 16 2 C 0.06 1.21 7.37 25.26 0.19 1.40 16 3 O -0.18 -3.05 10.52 4.52 0.05 -3.01 16 4 C -0.03 -0.39 12.03 66.89 0.80 0.42 16 5 C -0.20 -2.76 10.60 23.65 0.25 -2.50 16 6 C -0.27 -5.36 6.31 -18.99 -0.12 -5.48 16 7 C 0.59 13.16 7.78 86.65 0.67 13.83 16 8 O -0.58 -16.21 14.51 -4.08 -0.06 -16.27 16 9 N -0.71 -12.27 4.53 -445.84 -2.02 -14.29 16 10 C 0.15 2.65 2.57 45.00 0.12 2.77 16 11 H 0.07 1.61 7.58 -2.39 -0.02 1.60 16 12 C -0.16 -2.48 9.48 71.98 0.68 -1.80 16 13 C -0.11 -1.99 5.01 30.60 0.15 -1.83 16 14 C 0.06 1.41 5.57 86.30 0.48 1.89 16 15 N -0.68 -20.77 6.13 -517.91 -3.17 -23.95 16 16 C 0.06 2.22 6.17 85.56 0.53 2.75 16 17 C 0.44 20.88 7.82 87.66 0.69 21.56 16 18 O -0.62 -34.37 15.78 -3.06 -0.05 -34.42 16 19 N -0.57 -29.59 5.29 -306.98 -1.62 -31.21 16 20 C -0.33 -19.01 9.68 84.04 0.81 -18.19 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 23 N -0.92 -49.88 13.05 21.66 0.28 -49.60 16 24 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.75 6.48 -2.39 -0.02 1.73 16 31 H 0.25 0.71 8.06 -2.91 -0.02 0.69 16 32 H 0.18 1.54 7.74 -2.91 -0.02 1.52 16 33 H 0.41 5.36 7.77 -92.71 -0.72 4.64 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.04 0.76 7.75 -2.39 -0.02 0.74 16 41 H 0.35 10.72 8.43 -89.69 -0.76 9.96 16 42 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 43 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.40 19.44 7.90 -92.71 -0.73 18.71 16 45 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 Total: -1.00 -74.21 385.06 0.69 -73.52 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -1.17 Total: 40.33 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 6.43 Total: 13.99 kcal Atomic # 7 Polarization: -112.51 SS G_CDS: -6.53 Total: -119.04 kcal Atomic # 8 Polarization: -53.63 SS G_CDS: -0.06 Total: -53.69 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.21 0.69 -73.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497139980.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.550 kcal (2) G-P(sol) polarization free energy of solvation -74.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds