Wall clock time and date at job start Tue Mar 31 2020 14:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.33648 * 125.80018 * 2 1 4 4 C 1.34218 * 110.90826 * 179.73468 * 3 2 1 5 5 C 1.34181 * 109.11996 * 0.44916 * 4 3 2 6 6 C 1.36414 * 125.79951 * 180.02562 * 2 1 3 7 7 C 1.47378 * 127.19381 * 359.97438 * 6 2 1 8 8 O 1.21611 * 120.00341 * 359.97438 * 7 6 2 9 9 N 1.34777 * 119.99739 * 179.97438 * 7 6 2 10 10 C 1.46500 * 119.99924 * 180.02562 * 9 7 6 11 11 H 1.09008 * 109.46807 * 322.99245 * 10 9 7 12 12 C 1.53004 * 109.47195 * 82.99021 * 10 9 7 13 13 C 1.52995 * 109.47173 * 202.99448 * 10 9 7 14 14 N 1.46896 * 109.47642 * 55.16010 * 13 10 9 15 15 C 1.46898 * 111.00198 * 198.92982 * 14 13 10 16 16 C 1.46907 * 110.99617 * 74.97313 * 14 13 10 17 17 C 1.50704 * 109.46891 * 190.00064 * 16 14 13 18 18 O 1.21290 * 120.00124 * 0.02562 * 17 16 14 19 19 N 1.34770 * 119.99913 * 180.02562 * 17 16 14 20 20 C 1.37096 * 120.00211 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99707 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00325 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99970 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00313 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47123 * 59.99668 * 24 22 20 26 26 H 1.48494 * 109.47149 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46762 * 300.00388 * 24 22 20 28 28 H 1.08999 * 109.46971 * 269.99973 * 1 2 3 29 29 H 1.08999 * 109.47172 * 29.99829 * 1 2 3 30 30 H 1.09002 * 109.47258 * 149.99634 * 1 2 3 31 31 H 1.07995 * 125.43737 * 180.28811 * 4 3 2 32 32 H 1.08001 * 127.02135 * 179.83979 * 5 4 3 33 33 H 0.96998 * 120.00138 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.46744 * 299.99835 * 12 10 9 35 35 H 1.08996 * 109.46771 * 60.00042 * 12 10 9 36 36 H 1.09001 * 109.47069 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.47201 * 175.16705 * 13 10 9 38 38 H 1.09007 * 109.46790 * 295.15814 * 13 10 9 39 39 H 1.08996 * 109.47171 * 54.12139 * 15 14 13 40 40 H 1.09000 * 109.46633 * 174.12454 * 15 14 13 41 41 H 1.09002 * 109.46874 * 294.11919 * 15 14 13 42 42 H 1.08998 * 109.47238 * 310.00160 * 16 14 13 43 43 H 1.09001 * 109.46790 * 70.00804 * 16 14 13 44 44 H 0.97003 * 119.99938 * 0.02562 * 19 17 16 45 45 H 0.97002 * 120.00526 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2889 1.0840 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0001 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0006 8 8 0.6890 -2.7892 0.0002 9 7 2.7931 -3.5015 -0.0016 10 6 2.3646 -4.9025 -0.0023 11 1 1.4738 -5.0102 0.6167 12 6 2.0465 -5.3378 -1.4342 13 6 3.4855 -5.7788 0.5601 14 7 3.8706 -5.2879 1.8900 15 6 5.1991 -5.7860 2.2707 16 6 2.8640 -5.6505 2.8967 17 6 3.1611 -4.9296 4.1864 18 8 4.1169 -4.1866 4.2595 19 7 2.3646 -5.1105 5.2584 20 6 2.6345 -4.4544 6.4315 21 1 3.4857 -3.7928 6.4966 22 6 1.8137 -4.6413 7.5369 23 7 0.7790 -5.4475 7.4581 24 14 2.1811 -3.7467 9.1351 25 1 2.1409 -2.2807 8.9023 26 1 1.1648 -4.1148 10.1533 27 1 3.5301 -4.1340 9.6203 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8900 -0.5139 31 1 4.4172 1.4285 0.0115 32 1 4.5928 -1.1840 -0.0002 33 1 3.7382 -3.2834 -0.0019 34 1 1.2478 -4.7134 -1.8347 35 1 2.9372 -5.2300 -2.0531 36 1 1.7272 -6.3800 -1.4346 37 1 3.1365 -6.8084 0.6398 38 1 4.3475 -5.7380 -0.1059 39 1 5.9187 -5.5335 1.4919 40 1 5.5040 -5.3255 3.2104 41 1 5.1601 -6.8685 2.3923 42 1 1.8743 -5.3646 2.5403 43 1 2.8920 -6.7267 3.0673 44 1 1.6003 -5.7051 5.2000 45 1 0.2061 -5.5783 8.2299 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498221749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:20 Heat of formation + Delta-G solvation = -78.940638 kcal Electronic energy + Delta-G solvation = -27860.224941 eV Core-core repulsion = 23878.574225 eV Total energy + Delta-G solvation = -3981.650717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.49570 -40.77191 -40.17385 -38.24293 -36.12790 -35.53691 -34.08481 -33.27935 -32.85238 -31.76855 -29.59119 -27.96724 -27.82260 -26.60691 -24.75913 -23.57193 -22.45063 -21.51434 -20.86673 -20.74171 -19.84830 -18.88941 -17.89494 -17.33036 -17.23442 -16.78945 -16.63696 -16.59707 -15.98662 -15.72389 -15.52595 -15.29991 -15.12498 -14.99109 -14.38510 -14.27450 -13.98450 -13.86475 -13.75408 -13.70094 -13.43997 -13.32406 -13.06257 -12.90640 -12.82520 -12.65869 -12.62405 -12.47602 -12.38268 -12.13882 -11.71044 -11.44061 -10.96593 -10.79493 -10.27023 -10.00959 -9.97533 -9.48438 -9.19115 -8.46495 -5.95347 0.37504 1.16543 1.38370 1.39606 1.50915 1.87729 2.05513 2.26453 2.32028 2.46226 2.80077 3.20138 3.37459 3.64696 3.79977 3.90853 3.93864 4.14106 4.20106 4.34094 4.36861 4.42080 4.51159 4.58240 4.59886 4.65473 4.66749 4.72198 4.75403 4.78116 4.83076 4.92112 5.08732 5.21629 5.24229 5.31208 5.39755 5.40381 5.61886 5.87840 6.06020 6.06911 6.22605 6.60133 6.67124 7.12628 7.32651 7.56149 8.11861 8.71005 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009912 B = 0.003802 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.063670 B = 7363.447472 C = 8808.879968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.059 3.941 3 O -0.183 6.183 4 C -0.034 4.034 5 C -0.197 4.197 6 C -0.270 4.270 7 C 0.583 3.417 8 O -0.584 6.584 9 N -0.689 5.689 10 C 0.145 3.855 11 H 0.057 0.943 12 C -0.150 4.150 13 C 0.049 3.951 14 N -0.531 5.531 15 C 0.028 3.972 16 C 0.058 3.942 17 C 0.443 3.557 18 O -0.609 6.609 19 N -0.577 5.577 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.923 5.923 24 Si 0.993 3.007 25 H -0.274 1.274 26 H -0.270 1.270 27 H -0.269 1.269 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.249 0.751 32 H 0.175 0.825 33 H 0.409 0.591 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.393 0.607 45 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.685 3.852 -19.838 20.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.005 3.995 3 O -0.079 6.079 4 C -0.099 4.099 5 C -0.216 4.216 6 C -0.274 4.274 7 C 0.372 3.628 8 O -0.467 6.467 9 N -0.339 5.339 10 C 0.040 3.960 11 H 0.075 0.925 12 C -0.209 4.209 13 C -0.078 4.078 14 N -0.255 5.255 15 C -0.119 4.119 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.495 6.495 19 N -0.215 5.215 20 C -0.461 4.461 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.816 3.184 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.194 1.194 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.113 0.887 31 H 0.265 0.735 32 H 0.192 0.808 33 H 0.245 0.755 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.107 0.893 43 H 0.086 0.914 44 H 0.227 0.773 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.307 4.852 -19.669 20.712 hybrid contribution 0.074 -0.888 1.232 1.521 sum 4.381 3.964 -18.437 19.361 Atomic orbital electron populations 1.20584 0.83080 1.05387 1.04430 1.23125 0.94963 0.83396 0.97979 1.83762 1.18059 1.34708 1.71418 1.24662 0.83489 0.96874 1.04872 1.23143 0.96250 0.95348 1.06819 1.21382 0.95084 0.93662 1.17292 1.17449 0.85316 0.84734 0.75304 1.90697 1.17982 1.84704 1.53297 1.45518 1.09774 1.05309 1.73253 1.21037 0.97269 0.80229 0.97496 0.92502 1.22051 1.02216 1.02172 0.94456 1.22565 0.98957 0.96865 0.89452 1.61465 1.02031 1.60767 1.01235 1.22440 0.89730 0.97154 1.02604 1.21727 0.97168 0.97955 0.90437 1.20731 0.84590 0.85810 0.85879 1.90441 1.31912 1.42304 1.84835 1.41955 1.27105 1.42129 1.10274 1.19611 1.12453 1.24813 0.89241 0.90281 1.26047 0.95089 0.97779 1.02445 1.69674 1.16350 1.37356 1.32990 0.84998 0.78271 0.78280 0.76850 1.19900 1.19467 1.19415 0.89702 0.87985 0.88667 0.73530 0.80803 0.75456 0.93772 0.90548 0.89815 0.91334 0.87275 0.89231 0.92823 0.95353 0.89263 0.91387 0.77342 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.86 9.89 71.24 0.70 -1.15 16 2 C 0.06 1.61 7.37 25.26 0.19 1.80 16 3 O -0.18 -4.45 10.52 4.47 0.05 -4.40 16 4 C -0.03 -0.66 12.03 66.89 0.80 0.14 16 5 C -0.20 -4.48 10.60 23.65 0.25 -4.23 16 6 C -0.27 -7.91 6.31 -18.99 -0.12 -8.03 16 7 C 0.58 18.84 7.75 86.65 0.67 19.51 16 8 O -0.58 -21.99 14.53 -4.07 -0.06 -22.05 16 9 N -0.69 -18.29 4.82 -445.84 -2.15 -20.44 16 10 C 0.14 3.46 2.55 44.99 0.11 3.58 16 11 H 0.06 1.72 6.41 -2.38 -0.02 1.71 16 12 C -0.15 -2.77 9.46 71.98 0.68 -2.09 16 13 C 0.05 1.02 4.54 86.30 0.39 1.41 16 14 N -0.53 -15.92 4.16 -927.04 -3.86 -19.78 16 15 C 0.03 0.81 9.17 127.69 1.17 1.98 16 16 C 0.06 2.10 5.28 85.56 0.45 2.55 16 17 C 0.44 21.65 7.52 87.66 0.66 22.31 16 18 O -0.61 -33.58 13.88 -3.06 -0.04 -33.62 16 19 N -0.58 -30.80 5.29 -306.99 -1.62 -32.42 16 20 C -0.33 -19.33 9.68 84.04 0.81 -18.52 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -51.38 13.05 21.66 0.28 -51.10 16 24 Si 0.99 43.97 29.55 68.60 2.03 46.00 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.09 2.50 6.49 -2.39 -0.02 2.48 16 31 H 0.25 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.17 3.13 7.74 -2.91 -0.02 3.11 16 33 H 0.41 9.51 7.76 -92.71 -0.72 8.79 16 34 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 35 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.23 8.01 -2.39 -0.02 1.21 16 38 H 0.11 1.66 7.81 -2.38 -0.02 1.64 16 39 H 0.09 1.97 7.94 -2.39 -0.02 1.95 16 40 H 0.05 2.04 5.92 -2.39 -0.01 2.02 16 41 H 0.03 0.73 8.13 -2.39 -0.02 0.71 16 42 H 0.09 3.19 6.66 -2.39 -0.02 3.18 16 43 H 0.07 2.17 8.11 -2.39 -0.02 2.15 16 44 H 0.39 20.25 7.90 -92.71 -0.73 19.52 16 45 H 0.28 14.47 8.31 -92.71 -0.77 13.70 16 Total: -1.00 -76.80 377.87 1.45 -75.35 By element: Atomic # 1 Polarization: 43.93 SS G_CDS: -0.42 Total: 43.51 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 7.25 Total: 18.95 kcal Atomic # 7 Polarization: -116.39 SS G_CDS: -7.35 Total: -123.74 kcal Atomic # 8 Polarization: -60.02 SS G_CDS: -0.05 Total: -60.08 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -76.80 1.45 -75.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498221749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.589 kcal (2) G-P(sol) polarization free energy of solvation -76.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds