Wall clock time and date at job start Tue Mar 31 2020 14:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.33651 * 125.80413 * 2 1 4 4 C 1.34219 * 110.90535 * 180.02562 * 3 2 1 5 5 C 1.34177 * 109.12600 * 359.72533 * 4 3 2 6 6 C 1.36421 * 125.79738 * 180.02562 * 2 1 3 7 7 C 1.47381 * 127.19338 * 359.95933 * 6 2 1 8 8 O 1.21610 * 119.99958 * 359.97438 * 7 6 2 9 9 N 1.34774 * 120.00007 * 180.27138 * 7 6 2 10 10 C 1.46500 * 120.00199 * 179.72491 * 9 7 6 11 11 H 1.09001 * 109.46762 * 34.60267 * 10 9 7 12 12 C 1.53001 * 109.47100 * 274.60955 * 10 9 7 13 13 C 1.52992 * 109.47200 * 154.60941 * 10 9 7 14 14 N 1.46897 * 109.47167 * 305.18185 * 13 10 9 15 15 C 1.46908 * 111.00245 * 163.93576 * 14 13 10 16 16 C 1.46899 * 111.00248 * 287.89512 * 14 13 10 17 17 C 1.50707 * 109.47335 * 169.99823 * 16 14 13 18 18 O 1.21295 * 119.99633 * 0.02562 * 17 16 14 19 19 N 1.34769 * 120.00038 * 179.97438 * 17 16 14 20 20 C 1.37103 * 119.99736 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00248 * 0.02562 * 20 19 17 22 22 C 1.38951 * 119.99735 * 179.97438 * 20 19 17 23 23 N 1.31408 * 119.99988 * 180.02562 * 22 20 19 24 24 Si 1.86806 * 120.00169 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47151 * 89.99418 * 24 22 20 26 26 H 1.48497 * 109.46950 * 209.99574 * 24 22 20 27 27 H 1.48505 * 109.46807 * 329.99384 * 24 22 20 28 28 H 1.09005 * 109.47349 * 269.98052 * 1 2 3 29 29 H 1.09003 * 109.46845 * 29.97593 * 1 2 3 30 30 H 1.09002 * 109.47562 * 149.97740 * 1 2 3 31 31 H 1.08002 * 125.43367 * 180.02562 * 4 3 2 32 32 H 1.07998 * 127.01970 * 180.26933 * 5 4 3 33 33 H 0.97002 * 120.00113 * 359.73325 * 9 7 6 34 34 H 1.09002 * 109.47057 * 300.00036 * 12 10 9 35 35 H 1.09003 * 109.47456 * 59.99583 * 12 10 9 36 36 H 1.08997 * 109.47276 * 179.97438 * 12 10 9 37 37 H 1.08997 * 109.47357 * 65.18793 * 13 10 9 38 38 H 1.09010 * 109.47197 * 185.18776 * 13 10 9 39 39 H 1.08998 * 109.46651 * 54.89884 * 15 14 13 40 40 H 1.08995 * 109.46946 * 174.89834 * 15 14 13 41 41 H 1.08998 * 109.46974 * 294.90283 * 15 14 13 42 42 H 1.09000 * 109.46724 * 289.99496 * 16 14 13 43 43 H 1.08999 * 109.47100 * 49.99784 * 16 14 13 44 44 H 0.97001 * 120.00466 * 0.02562 * 19 17 16 45 45 H 0.96999 * 120.00002 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7388 -0.0006 5 6 3.6849 -0.5993 0.0051 6 6 2.3050 -1.1065 -0.0005 7 6 1.8738 -2.5158 -0.0003 8 8 0.6888 -2.7892 0.0009 9 7 2.7928 -3.5017 0.0047 10 6 2.3643 -4.9026 0.0110 11 1 1.4494 -5.0052 -0.5726 12 6 2.1036 -5.3497 1.4508 13 6 3.4615 -5.7743 -0.6030 14 7 3.7989 -5.2674 -1.9398 15 6 5.0797 -5.8174 -2.4037 16 6 2.7241 -5.5555 -2.8989 17 6 2.9870 -4.8159 -4.1854 18 8 3.9732 -4.1179 -4.2928 19 7 2.1271 -4.9309 -5.2167 20 6 2.3662 -4.2576 -6.3868 21 1 3.2437 -3.6354 -6.4823 22 6 1.4798 -4.3766 -7.4503 23 7 1.7091 -3.7317 -8.5720 24 14 -0.0377 -5.4534 -7.2855 25 1 -1.1653 -4.6426 -6.7597 26 1 -0.4015 -6.0031 -8.6161 27 1 0.2473 -6.5706 -6.3494 28 1 -0.3634 -0.0003 1.0277 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5142 31 1 4.4173 1.4283 -0.0003 32 1 4.5927 -1.1842 0.0103 33 1 3.7380 -3.2836 0.0042 34 1 3.0185 -5.2469 2.0344 35 1 1.3220 -4.7286 1.8883 36 1 1.7844 -6.3919 1.4555 37 1 4.3473 -5.7439 0.0314 38 1 3.1069 -6.8020 -0.6830 39 1 5.0439 -6.9060 -2.3623 40 1 5.2617 -5.4985 -3.4299 41 1 5.8838 -5.4557 -1.7628 42 1 2.6908 -6.6270 -3.0961 43 1 1.7697 -5.2328 -2.4828 44 1 1.3387 -5.4895 -5.1308 45 1 1.0902 -3.8145 -9.3143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498221751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:23 Heat of formation + Delta-G solvation = -73.823737 kcal Electronic energy + Delta-G solvation = -27991.132604 eV Core-core repulsion = 24009.703773 eV Total energy + Delta-G solvation = -3981.428831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.49667 -40.82636 -40.26494 -38.28223 -36.16224 -35.55905 -34.08370 -33.75946 -32.85360 -31.76632 -29.74357 -27.97173 -27.82127 -26.48966 -24.74728 -23.52622 -22.43030 -21.52832 -21.12222 -20.77450 -20.13664 -18.88922 -17.89096 -17.33787 -17.24699 -16.81033 -16.77528 -16.66234 -15.88870 -15.67259 -15.55456 -15.24997 -15.08900 -14.94485 -14.41918 -14.35312 -14.22921 -13.99958 -13.82942 -13.76369 -13.55723 -13.38000 -13.14489 -12.91233 -12.81232 -12.69039 -12.66196 -12.43789 -12.40999 -11.99838 -11.68880 -11.47352 -10.96264 -10.79657 -10.35849 -10.23822 -9.97535 -9.48216 -9.19633 -8.42727 -6.02564 0.37760 1.16116 1.26791 1.32905 1.40537 1.87818 1.94963 2.20435 2.31288 2.45468 2.66108 3.13218 3.21437 3.64301 3.78511 3.91202 3.93542 4.05230 4.18884 4.31251 4.32708 4.37395 4.47966 4.57479 4.60830 4.65082 4.66646 4.72804 4.75261 4.79170 4.84332 4.92155 5.09158 5.21666 5.22795 5.32484 5.39950 5.51441 5.62883 5.88972 6.00929 6.05868 6.20705 6.58655 6.66719 6.87537 7.32472 7.38930 7.95887 8.74941 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.004019 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.204738 B = 6965.183364 C = 8144.948960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.058 3.942 3 O -0.184 6.184 4 C -0.036 4.036 5 C -0.197 4.197 6 C -0.270 4.270 7 C 0.584 3.416 8 O -0.582 6.582 9 N -0.690 5.690 10 C 0.142 3.858 11 H 0.064 0.936 12 C -0.150 4.150 13 C 0.050 3.950 14 N -0.534 5.534 15 C 0.029 3.971 16 C 0.054 3.946 17 C 0.453 3.547 18 O -0.599 6.599 19 N -0.596 5.596 20 C -0.324 4.324 21 H 0.057 0.943 22 C -0.013 4.013 23 N -0.934 5.934 24 Si 0.959 3.041 25 H -0.262 1.262 26 H -0.271 1.271 27 H -0.233 1.233 28 H 0.102 0.898 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.247 0.753 32 H 0.175 0.825 33 H 0.409 0.591 34 H 0.074 0.926 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.107 0.893 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.099 0.901 44 H 0.386 0.614 45 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -1.930 24.231 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.005 3.995 3 O -0.081 6.081 4 C -0.101 4.101 5 C -0.216 4.216 6 C -0.275 4.275 7 C 0.373 3.627 8 O -0.465 6.465 9 N -0.339 5.339 10 C 0.037 3.963 11 H 0.082 0.918 12 C -0.209 4.209 13 C -0.077 4.077 14 N -0.258 5.258 15 C -0.119 4.119 16 C -0.078 4.078 17 C 0.241 3.759 18 O -0.483 6.483 19 N -0.238 5.238 20 C -0.454 4.454 21 H 0.075 0.925 22 C -0.211 4.211 23 N -0.574 5.574 24 Si 0.779 3.221 25 H -0.186 1.186 26 H -0.196 1.196 27 H -0.156 1.156 28 H 0.120 0.880 29 H 0.111 0.889 30 H 0.106 0.894 31 H 0.263 0.737 32 H 0.192 0.808 33 H 0.245 0.755 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.090 0.910 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.221 0.779 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.652 -0.846 23.986 24.010 hybrid contribution -0.223 -1.022 -0.972 1.427 sum 0.429 -1.868 23.014 23.094 Atomic orbital electron populations 1.20587 0.83013 1.04875 1.04985 1.23157 0.95015 0.83407 0.97955 1.83763 1.18057 1.34802 1.71432 1.24654 0.83502 0.96945 1.04973 1.23143 0.96335 0.95305 1.06777 1.21401 0.94957 0.93824 1.17284 1.17399 0.85342 0.84642 0.75280 1.90692 1.17867 1.84655 1.53294 1.45530 1.09756 1.05377 1.73274 1.21090 0.97633 0.80087 0.97453 0.91795 1.22053 1.02336 1.02195 0.94319 1.22565 0.99403 0.96880 0.88868 1.61451 1.02120 1.60586 1.01688 1.22401 0.90769 0.97006 1.01699 1.21805 0.96890 0.98655 0.90403 1.20837 0.84101 0.85170 0.85823 1.90505 1.30611 1.43807 1.83384 1.42084 1.24191 1.44779 1.12727 1.18984 1.09792 1.25980 0.90606 0.92492 1.26035 1.01974 0.99062 0.94078 1.69792 1.39210 1.43649 1.04798 0.85444 0.77838 0.79291 0.79485 1.18630 1.19610 1.15644 0.87980 0.88852 0.89411 0.73670 0.80798 0.75511 0.90741 0.93795 0.89652 0.87502 0.90954 0.94397 0.93316 0.89890 0.90338 0.88336 0.77867 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.82 9.89 71.24 0.70 -1.12 16 2 C 0.06 1.58 7.37 25.26 0.19 1.77 16 3 O -0.18 -4.54 10.52 4.45 0.05 -4.50 16 4 C -0.04 -0.71 12.03 66.89 0.80 0.09 16 5 C -0.20 -4.50 10.60 23.65 0.25 -4.25 16 6 C -0.27 -7.82 6.31 -18.99 -0.12 -7.94 16 7 C 0.58 18.12 7.78 86.65 0.67 18.80 16 8 O -0.58 -20.89 14.50 -4.06 -0.06 -20.95 16 9 N -0.69 -17.19 4.79 -445.86 -2.14 -19.33 16 10 C 0.14 3.05 2.52 44.99 0.11 3.16 16 11 H 0.06 1.70 6.22 -2.39 -0.01 1.69 16 12 C -0.15 -2.44 9.49 71.98 0.68 -1.75 16 13 C 0.05 0.92 4.53 86.30 0.39 1.31 16 14 N -0.53 -14.85 4.17 -927.05 -3.87 -18.72 16 15 C 0.03 0.79 9.19 127.69 1.17 1.96 16 16 C 0.05 1.73 5.30 85.56 0.45 2.19 16 17 C 0.45 21.05 7.42 87.66 0.65 21.70 16 18 O -0.60 -33.08 13.96 -3.07 -0.04 -33.13 16 19 N -0.60 -29.32 5.09 -306.98 -1.56 -30.88 16 20 C -0.32 -19.47 10.16 84.04 0.85 -18.62 16 21 H 0.06 4.04 7.39 -2.91 -0.02 4.01 16 22 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 23 N -0.93 -57.32 13.96 21.66 0.30 -57.02 16 24 Si 0.96 40.40 27.74 68.60 1.90 42.30 16 25 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.23 -8.36 6.52 99.48 0.65 -7.71 16 28 H 0.10 1.95 8.14 -2.38 -0.02 1.94 16 29 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.09 2.45 6.49 -2.39 -0.02 2.43 16 31 H 0.25 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.17 3.13 7.74 -2.91 -0.02 3.10 16 33 H 0.41 9.00 7.78 -92.71 -0.72 8.28 16 34 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.11 1.45 7.99 -2.39 -0.02 1.43 16 38 H 0.07 1.06 8.05 -2.38 -0.02 1.04 16 39 H 0.04 0.85 8.13 -2.39 -0.02 0.83 16 40 H 0.05 1.81 5.79 -2.39 -0.01 1.80 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 42 H 0.08 2.09 8.12 -2.39 -0.02 2.07 16 43 H 0.10 3.04 6.50 -2.39 -0.02 3.02 16 44 H 0.39 16.16 5.76 -92.71 -0.53 15.62 16 45 H 0.28 15.65 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -83.82 374.73 1.58 -82.24 By element: Atomic # 1 Polarization: 43.21 SS G_CDS: -0.28 Total: 42.93 kcal Atomic # 6 Polarization: 9.77 SS G_CDS: 7.29 Total: 17.05 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -7.27 Total: -125.95 kcal Atomic # 8 Polarization: -58.51 SS G_CDS: -0.06 Total: -58.57 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.90 Total: 42.30 kcal Total: -83.82 1.58 -82.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498221751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.412 kcal (2) G-P(sol) polarization free energy of solvation -83.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds