Wall clock time and date at job start Tue Mar 31 2020 14:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33650 * 125.80484 * 2 1 4 4 C 1.34215 * 110.91388 * 179.73295 * 3 2 1 5 5 C 1.34174 * 109.11866 * 0.44995 * 4 3 2 6 6 C 1.36420 * 125.80170 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19248 * 359.97438 * 6 2 1 8 8 O 1.21619 * 119.99869 * 321.28208 * 7 6 2 9 9 N 1.34778 * 120.00320 * 141.28737 * 7 6 2 10 10 C 1.46500 * 119.99708 * 5.18521 * 9 7 6 11 11 C 1.46496 * 119.99862 * 185.18098 * 9 7 6 12 12 C 1.53005 * 109.46753 * 90.00582 * 11 9 7 13 13 C 1.53004 * 109.46997 * 179.97438 * 12 11 9 14 14 N 1.46894 * 109.47100 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99858 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46959 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99976 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99786 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99907 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99729 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99803 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00133 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99494 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47426 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46817 * 120.00660 * 23 21 19 26 26 H 1.48499 * 109.47024 * 239.99913 * 23 21 19 27 27 H 1.09004 * 109.46555 * 269.99935 * 1 2 3 28 28 H 1.09000 * 109.47289 * 29.99488 * 1 2 3 29 29 H 1.09000 * 109.47457 * 150.00372 * 1 2 3 30 30 H 1.07993 * 125.44072 * 180.28254 * 4 3 2 31 31 H 1.08004 * 127.01916 * 179.83433 * 5 4 3 32 32 H 1.08999 * 109.47285 * 84.54689 * 10 9 7 33 33 H 1.08993 * 109.46857 * 204.54791 * 10 9 7 34 34 H 1.09001 * 109.47044 * 324.54852 * 10 9 7 35 35 H 1.09000 * 109.46733 * 209.99764 * 11 9 7 36 36 H 1.08995 * 109.47917 * 330.00074 * 11 9 7 37 37 H 1.09000 * 109.46833 * 299.99121 * 12 11 9 38 38 H 1.08995 * 109.47354 * 59.99917 * 12 11 9 39 39 H 1.09003 * 109.46550 * 299.99829 * 13 12 11 40 40 H 1.09006 * 109.47222 * 59.99411 * 13 12 11 41 41 H 1.00901 * 111.00032 * 56.04522 * 14 13 12 42 42 H 1.09001 * 109.47032 * 299.99288 * 15 14 13 43 43 H 1.08996 * 109.47067 * 59.99989 * 15 14 13 44 44 H 0.96996 * 120.00071 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99843 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0001 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0006 8 8 0.9105 -2.8570 0.6585 9 7 2.5475 -3.4265 -0.7310 10 6 3.7735 -3.0401 -1.4337 11 6 2.0537 -4.8027 -0.8220 12 6 1.1038 -4.9257 -2.0152 13 6 0.5885 -6.3632 -2.1107 14 7 -0.3239 -6.4812 -3.2559 15 6 -0.8391 -7.8513 -3.3794 16 6 -1.7698 -7.9333 -4.5619 17 8 -1.9833 -6.9472 -5.2351 18 7 -2.3650 -9.1023 -4.8712 19 6 -3.2121 -9.1767 -5.9467 20 1 -3.4021 -8.2987 -6.5462 21 6 -3.8252 -10.3820 -6.2659 22 7 -3.5936 -11.4504 -5.5368 23 14 -4.9788 -10.4836 -7.7317 24 1 -5.0698 -9.1523 -8.3832 25 1 -4.4562 -11.4759 -8.7051 26 1 -6.3271 -10.9036 -7.2723 27 1 -0.3632 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 4.4172 1.4284 0.0114 31 1 4.5928 -1.1840 -0.0002 32 1 4.6201 -3.1057 -0.7503 33 1 3.9351 -3.7105 -2.2778 34 1 3.6775 -2.0165 -1.7959 35 1 2.8951 -5.4825 -0.9559 36 1 1.5215 -5.0592 0.0940 37 1 0.2624 -4.2459 -1.8813 38 1 1.6360 -4.6693 -2.9312 39 1 1.4302 -7.0427 -2.2447 40 1 0.0565 -6.6201 -1.1946 41 1 0.1268 -6.1864 -4.1091 42 1 -0.0072 -8.5408 -3.5230 43 1 -1.3806 -8.1191 -2.4721 44 1 -2.1945 -9.8907 -4.3326 45 1 -4.0213 -12.2919 -5.7599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498511290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:35 Heat of formation + Delta-G solvation = -55.154615 kcal Electronic energy + Delta-G solvation = -26086.915255 eV Core-core repulsion = 22106.295978 eV Total energy + Delta-G solvation = -3980.619277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.94328 -39.88804 -38.27662 -36.56399 -35.42582 -33.89294 -33.50643 -32.30687 -31.61759 -31.12687 -27.79385 -27.53055 -26.49055 -25.07986 -23.71033 -22.61179 -21.67213 -21.13973 -19.25694 -19.15009 -17.88657 -17.85061 -16.82699 -16.53153 -16.39552 -15.89923 -15.63033 -15.50849 -14.71927 -14.61024 -14.30466 -14.21730 -13.72795 -13.64691 -13.51612 -13.37176 -13.32594 -13.29223 -12.98274 -12.71099 -12.38448 -12.13307 -12.04697 -11.84475 -11.66948 -11.46185 -11.33995 -11.04689 -10.73806 -10.32715 -10.28788 -10.20483 -10.02904 -9.49947 -9.03872 -8.84567 -8.42922 -8.01804 -7.93280 -6.39702 -3.80395 1.12071 1.70286 2.42109 2.65651 2.93762 3.17922 3.28249 3.35827 3.93700 4.11615 4.13687 4.28927 4.38297 4.52732 4.78459 4.79704 4.90144 4.98815 5.09899 5.15806 5.18558 5.19723 5.24831 5.26922 5.31222 5.35781 5.42478 5.43526 5.51830 5.70418 5.78161 5.82434 5.89409 6.02017 6.08342 6.12353 6.29857 6.34774 6.65692 7.08572 7.26751 7.57477 7.70722 7.93197 8.09064 8.63824 9.20215 9.56900 10.08518 10.78197 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.001764 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.446161 B =15873.128458 C =16344.032627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.071 3.929 3 O -0.176 6.176 4 C -0.040 4.040 5 C -0.189 4.189 6 C -0.242 4.242 7 C 0.590 3.410 8 O -0.531 6.531 9 N -0.609 5.609 10 C 0.077 3.923 11 C 0.117 3.883 12 C -0.131 4.131 13 C 0.063 3.937 14 N -0.669 5.669 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.208 0.792 31 H 0.158 0.842 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.348 0.652 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.392 0.608 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.002 19.588 12.977 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.019 3.981 3 O -0.072 6.072 4 C -0.105 4.105 5 C -0.208 4.208 6 C -0.247 4.247 7 C 0.379 3.621 8 O -0.409 6.409 9 N -0.342 5.342 10 C -0.066 4.066 11 C -0.006 4.006 12 C -0.170 4.170 13 C -0.067 4.067 14 N -0.302 5.302 15 C -0.082 4.082 16 C 0.227 3.773 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.115 0.885 30 H 0.224 0.776 31 H 0.176 0.824 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.044 0.956 40 H 0.091 0.909 41 H 0.167 0.833 42 H 0.061 0.939 43 H 0.104 0.896 44 H 0.225 0.775 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.627 20.376 13.187 29.997 hybrid contribution 0.758 -1.344 -0.773 1.726 sum 18.385 19.032 12.414 29.229 Atomic orbital electron populations 1.20498 0.83780 1.04639 1.04645 1.22751 0.94073 0.83021 0.98285 1.83768 1.17122 1.34906 1.71412 1.23873 0.83601 0.96364 1.06699 1.22953 0.96523 0.94354 1.06985 1.21106 0.93593 0.93801 1.16156 1.17296 0.82189 0.83871 0.78769 1.90817 1.27676 1.80442 1.41926 1.47632 1.26268 1.10642 1.49683 1.21979 0.85768 1.02047 0.96810 1.21492 0.97983 0.81053 1.00047 1.21897 0.99539 0.97746 0.97819 1.21857 0.94219 0.95160 0.95467 1.60039 1.39965 1.23043 1.07108 1.21673 0.97786 0.89495 0.99236 1.19833 0.85558 0.84408 0.87535 1.90520 1.66230 1.35968 1.54022 1.41873 1.40742 1.09549 1.27984 1.19762 1.20463 0.97044 1.05528 0.87871 1.25267 0.98688 0.94919 0.99161 1.69620 1.44369 1.00755 1.39614 0.85796 0.79454 0.78464 0.80601 1.19222 1.20801 1.20739 0.88891 0.90060 0.88493 0.77591 0.82445 0.92648 0.90771 0.90575 0.90435 0.89362 0.90496 0.91926 0.95563 0.90865 0.83308 0.93910 0.89554 0.77451 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 9.87 36.00 0.36 -0.30 16 2 C 0.07 0.70 7.37 -34.96 -0.26 0.44 16 3 O -0.18 -1.53 10.52 7.66 0.08 -1.45 16 4 C -0.04 -0.24 12.03 29.30 0.35 0.11 16 5 C -0.19 -1.35 8.84 -37.46 -0.33 -1.68 16 6 C -0.24 -2.48 5.44 -103.28 -0.56 -3.04 16 7 C 0.59 7.14 7.32 -12.54 -0.09 7.05 16 8 O -0.53 -8.16 15.89 5.26 0.08 -8.08 16 9 N -0.61 -5.96 2.87 -182.87 -0.53 -6.49 16 10 C 0.08 0.49 9.10 59.85 0.54 1.03 16 11 C 0.12 1.14 5.42 -4.04 -0.02 1.12 16 12 C -0.13 -1.50 5.80 -26.73 -0.15 -1.65 16 13 C 0.06 0.80 5.68 -3.83 -0.02 0.78 16 14 N -0.67 -11.32 6.13 -115.05 -0.70 -12.03 16 15 C 0.05 0.93 6.17 -4.97 -0.03 0.90 16 16 C 0.44 10.72 7.82 -10.98 -0.09 10.63 16 17 O -0.58 -16.28 15.78 5.55 0.09 -16.19 16 18 N -0.56 -14.62 5.29 -10.96 -0.06 -14.68 16 19 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 20 H 0.10 3.08 7.16 -52.49 -0.38 2.70 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 23 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.92 7.65 -51.93 -0.40 0.52 16 30 H 0.21 0.43 8.06 -52.49 -0.42 0.01 16 31 H 0.16 0.75 6.67 -52.48 -0.35 0.40 16 32 H 0.05 0.26 7.42 -51.93 -0.39 -0.12 16 33 H 0.07 0.40 8.03 -51.93 -0.42 -0.02 16 34 H 0.08 0.48 5.92 -51.93 -0.31 0.17 16 35 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 36 H 0.09 0.98 7.36 -51.93 -0.38 0.60 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.35 5.98 8.43 -39.29 -0.33 5.65 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 44 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 45 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 382.56 15.07 5.77 5.77 Total: -1.00 -35.52 382.56 -6.74 -42.26 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -6.63 Total: 11.48 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -0.55 Total: 7.25 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -0.56 Total: -57.31 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: 0.25 Total: -25.72 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.52 -6.74 -42.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498511290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.892 kcal (2) G-P(sol) polarization free energy of solvation -35.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds