Wall clock time and date at job start Tue Mar 31 2020 14:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.33650 * 125.80484 * 2 1 4 4 C 1.34215 * 110.91388 * 179.73295 * 3 2 1 5 5 C 1.34174 * 109.11866 * 0.44995 * 4 3 2 6 6 C 1.36420 * 125.80170 * 180.02562 * 2 1 3 7 7 C 1.47375 * 127.19248 * 359.97438 * 6 2 1 8 8 O 1.21619 * 119.99869 * 321.28208 * 7 6 2 9 9 N 1.34778 * 120.00320 * 141.28737 * 7 6 2 10 10 C 1.46500 * 119.99708 * 5.18521 * 9 7 6 11 11 C 1.46496 * 119.99862 * 185.18098 * 9 7 6 12 12 C 1.53005 * 109.46753 * 90.00582 * 11 9 7 13 13 C 1.53004 * 109.46997 * 179.97438 * 12 11 9 14 14 N 1.46894 * 109.47100 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99858 * 179.97438 * 14 13 12 16 16 C 1.50704 * 109.46959 * 179.97438 * 15 14 13 17 17 O 1.21293 * 119.99976 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99786 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99907 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99729 * 0.02562 * 19 18 16 21 21 C 1.38949 * 119.99803 * 179.97438 * 19 18 16 22 22 N 1.31406 * 120.00133 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99494 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47426 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46817 * 120.00660 * 23 21 19 26 26 H 1.48499 * 109.47024 * 239.99913 * 23 21 19 27 27 H 1.09004 * 109.46555 * 269.99935 * 1 2 3 28 28 H 1.09000 * 109.47289 * 29.99488 * 1 2 3 29 29 H 1.09000 * 109.47457 * 150.00372 * 1 2 3 30 30 H 1.07993 * 125.44072 * 180.28254 * 4 3 2 31 31 H 1.08004 * 127.01916 * 179.83433 * 5 4 3 32 32 H 1.08999 * 109.47285 * 84.54689 * 10 9 7 33 33 H 1.08993 * 109.46857 * 204.54791 * 10 9 7 34 34 H 1.09001 * 109.47044 * 324.54852 * 10 9 7 35 35 H 1.09000 * 109.46733 * 209.99764 * 11 9 7 36 36 H 1.08995 * 109.47917 * 330.00074 * 11 9 7 37 37 H 1.09000 * 109.46833 * 299.99121 * 12 11 9 38 38 H 1.08995 * 109.47354 * 59.99917 * 12 11 9 39 39 H 1.09003 * 109.46550 * 299.99829 * 13 12 11 40 40 H 1.09006 * 109.47222 * 59.99411 * 13 12 11 41 41 H 1.00901 * 111.00032 * 56.04522 * 14 13 12 42 42 H 1.09001 * 109.47032 * 299.99288 * 15 14 13 43 43 H 1.08996 * 109.47067 * 59.99989 * 15 14 13 44 44 H 0.96996 * 120.00071 * 0.02562 * 18 16 15 45 45 H 0.96999 * 119.99843 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0839 0.0000 4 6 3.5859 0.7390 0.0058 5 6 3.6849 -0.5991 -0.0001 6 6 2.3050 -1.1064 -0.0005 7 6 1.8740 -2.5157 -0.0006 8 8 0.9105 -2.8570 0.6585 9 7 2.5475 -3.4265 -0.7310 10 6 3.7735 -3.0401 -1.4337 11 6 2.0537 -4.8027 -0.8220 12 6 1.1038 -4.9257 -2.0152 13 6 0.5885 -6.3632 -2.1107 14 7 -0.3239 -6.4812 -3.2559 15 6 -0.8391 -7.8513 -3.3794 16 6 -1.7698 -7.9333 -4.5619 17 8 -1.9833 -6.9472 -5.2351 18 7 -2.3650 -9.1023 -4.8712 19 6 -3.2121 -9.1767 -5.9467 20 1 -3.4021 -8.2987 -6.5462 21 6 -3.8252 -10.3820 -6.2659 22 7 -3.5936 -11.4504 -5.5368 23 14 -4.9788 -10.4836 -7.7317 24 1 -5.0698 -9.1523 -8.3832 25 1 -4.4562 -11.4759 -8.7051 26 1 -6.3271 -10.9036 -7.2723 27 1 -0.3632 0.0000 1.0277 28 1 -0.3634 0.8900 -0.5137 29 1 -0.3634 -0.8900 -0.5138 30 1 4.4172 1.4284 0.0114 31 1 4.5928 -1.1840 -0.0002 32 1 4.6201 -3.1057 -0.7503 33 1 3.9351 -3.7105 -2.2778 34 1 3.6775 -2.0165 -1.7959 35 1 2.8951 -5.4825 -0.9559 36 1 1.5215 -5.0592 0.0940 37 1 0.2624 -4.2459 -1.8813 38 1 1.6360 -4.6693 -2.9312 39 1 1.4302 -7.0427 -2.2447 40 1 0.0565 -6.6201 -1.1946 41 1 0.1268 -6.1864 -4.1091 42 1 -0.0072 -8.5408 -3.5230 43 1 -1.3806 -8.1191 -2.4721 44 1 -2.1945 -9.8907 -4.3326 45 1 -4.0213 -12.2919 -5.7599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498511290.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:34 Heat of formation + Delta-G solvation = -81.762349 kcal Electronic energy + Delta-G solvation = -26088.069053 eV Core-core repulsion = 22106.295978 eV Total energy + Delta-G solvation = -3981.773075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.55126 -40.73810 -40.16586 -37.66586 -36.54059 -35.86951 -34.26946 -33.31921 -32.96032 -32.47537 -28.97486 -28.17837 -27.51004 -26.48710 -25.08822 -23.44236 -22.56014 -21.88381 -21.06431 -19.94027 -19.87830 -18.55737 -17.91446 -17.53427 -17.21251 -17.14537 -16.79697 -16.52915 -16.30873 -15.90519 -15.65377 -15.31195 -15.08648 -14.93025 -14.35151 -14.33383 -14.13659 -13.95104 -13.90904 -13.70761 -13.55301 -13.33179 -13.09637 -12.93946 -12.88203 -12.79635 -12.66371 -12.45610 -12.40741 -12.11803 -11.70064 -11.52677 -11.15821 -10.69528 -10.37956 -10.03082 -9.78228 -9.48671 -9.33018 -8.47933 -5.96939 0.40186 1.16239 1.36068 1.41314 1.55852 1.75966 1.95342 2.03196 2.19590 2.28849 2.93266 3.19137 3.50635 3.57284 3.65092 3.95540 3.97754 4.11422 4.23665 4.29192 4.31338 4.37807 4.44669 4.50700 4.53979 4.57061 4.60837 4.62354 4.67202 4.72953 4.79245 4.83103 4.92170 5.13966 5.15177 5.19291 5.39841 5.40051 5.54368 5.88346 6.05176 6.10163 6.32268 6.40484 6.58762 7.08491 7.11183 7.54426 8.09836 8.69695 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.026348 B = 0.001764 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.446161 B =15873.128458 C =16344.032627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.052 3.948 3 O -0.183 6.183 4 C -0.030 4.030 5 C -0.194 4.194 6 C -0.265 4.265 7 C 0.581 3.419 8 O -0.579 6.579 9 N -0.607 5.607 10 C 0.071 3.929 11 C 0.120 3.880 12 C -0.119 4.119 13 C 0.067 3.933 14 N -0.690 5.690 15 C 0.066 3.934 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.995 3.005 24 H -0.274 1.274 25 H -0.269 1.269 26 H -0.271 1.271 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.250 0.750 31 H 0.182 0.818 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.344 0.656 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.397 0.603 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.283 19.617 12.979 31.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.000 4.000 3 O -0.080 6.080 4 C -0.095 4.095 5 C -0.212 4.212 6 C -0.269 4.269 7 C 0.371 3.629 8 O -0.460 6.460 9 N -0.338 5.338 10 C -0.071 4.071 11 C -0.002 4.002 12 C -0.158 4.158 13 C -0.062 4.062 14 N -0.322 5.322 15 C -0.067 4.067 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.818 3.182 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.266 0.734 31 H 0.200 0.800 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.089 0.911 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.119 0.881 44 H 0.231 0.769 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.959 20.386 13.200 31.435 hybrid contribution 0.123 -1.312 -0.757 1.520 sum 20.081 19.074 12.442 30.363 Atomic orbital electron populations 1.20456 0.83721 1.04528 1.04713 1.22915 0.94624 0.83461 0.99042 1.83778 1.18228 1.34559 1.71404 1.24757 0.83356 0.96982 1.04366 1.23215 0.95785 0.94921 1.07325 1.21237 0.95631 0.92904 1.17137 1.17699 0.81731 0.84967 0.78494 1.90777 1.29755 1.81323 1.44124 1.47759 1.26870 1.10244 1.48967 1.22230 0.84762 1.02508 0.97555 1.21462 0.98631 0.81862 0.98292 1.21764 0.98767 0.96300 0.99018 1.21902 0.94364 0.96342 0.93627 1.60024 1.41799 1.22271 1.08156 1.21532 0.97414 0.91130 0.96601 1.20913 0.85232 0.83136 0.88351 1.90487 1.67601 1.37230 1.55864 1.41937 1.40926 1.10347 1.27763 1.19714 1.22744 0.96979 1.07028 0.90386 1.26065 0.99553 0.94137 1.01570 1.69675 1.44690 1.01144 1.40541 0.84851 0.77702 0.78248 0.77393 1.19857 1.19399 1.19609 0.88777 0.88202 0.90472 0.73406 0.80036 0.90356 0.89325 0.90435 0.87116 0.91121 0.93891 0.91074 0.92743 0.90952 0.83696 0.91051 0.88059 0.76899 0.91247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.87 71.24 0.70 -0.68 16 2 C 0.05 1.04 7.37 25.26 0.19 1.22 16 3 O -0.18 -2.98 10.52 4.49 0.05 -2.93 16 4 C -0.03 -0.29 12.03 66.89 0.80 0.51 16 5 C -0.19 -2.36 8.84 23.65 0.21 -2.15 16 6 C -0.26 -5.39 5.44 -18.99 -0.10 -5.50 16 7 C 0.58 14.42 7.32 86.65 0.63 15.05 16 8 O -0.58 -18.92 15.89 -4.09 -0.07 -18.99 16 9 N -0.61 -11.35 2.87 -850.73 -2.44 -13.79 16 10 C 0.07 0.73 9.10 127.77 1.16 1.89 16 11 C 0.12 2.22 5.42 86.38 0.47 2.69 16 12 C -0.12 -2.67 5.80 30.60 0.18 -2.49 16 13 C 0.07 1.59 5.68 86.31 0.49 2.09 16 14 N -0.69 -22.90 6.13 -517.92 -3.17 -26.07 16 15 C 0.07 2.32 6.17 85.56 0.53 2.85 16 16 C 0.44 21.43 7.82 87.66 0.69 22.12 16 17 O -0.63 -35.86 15.78 -3.07 -0.05 -35.91 16 18 N -0.57 -30.07 5.29 -306.98 -1.62 -31.69 16 19 C -0.34 -19.42 9.68 84.04 0.81 -18.61 16 20 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 21 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 22 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 23 Si 0.99 43.48 29.55 68.60 2.03 45.50 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 28 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 1.66 7.65 -2.39 -0.02 1.64 16 30 H 0.25 0.00 8.06 -2.91 -0.02 -0.03 16 31 H 0.18 1.15 6.67 -2.91 -0.02 1.13 16 32 H 0.08 0.47 7.42 -2.39 -0.02 0.46 16 33 H 0.09 0.67 8.03 -2.39 -0.02 0.65 16 34 H 0.08 0.80 5.92 -2.39 -0.01 0.79 16 35 H 0.11 1.32 8.07 -2.39 -0.02 1.30 16 36 H 0.07 1.58 7.36 -2.39 -0.02 1.56 16 37 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.75 8.14 -2.38 -0.02 1.74 16 41 H 0.34 11.73 8.43 -89.69 -0.76 10.97 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 44 H 0.40 19.69 7.90 -92.71 -0.73 18.95 16 45 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -80.01 382.56 1.77 -78.24 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -0.46 Total: 36.75 kcal Atomic # 6 Polarization: 11.50 SS G_CDS: 7.23 Total: 18.72 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.96 Total: -121.39 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -0.07 Total: -57.83 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -80.01 1.77 -78.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498511290.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.519 kcal (2) G-P(sol) polarization free energy of solvation -80.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds