Wall clock time and date at job start Tue Mar 31 2020 13:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46903 * 110.99567 * 2 1 4 4 C 1.46898 * 111.00331 * 123.95236 * 2 1 3 5 5 C 1.53006 * 109.46782 * 66.04726 * 4 2 1 6 6 C 1.52998 * 109.47096 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47322 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00321 * 270.00454 * 7 6 5 9 9 C 1.50700 * 109.46912 * 269.99844 * 8 7 6 10 10 H 1.07993 * 120.00098 * 359.97438 * 9 8 7 11 11 C 1.37880 * 119.99664 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00245 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00022 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.47077 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47493 * 119.99404 * 13 11 9 16 16 H 1.48499 * 109.47396 * 239.99847 * 13 11 9 17 17 C 1.34777 * 119.99614 * 89.99901 * 7 6 5 18 18 O 1.21727 * 120.00241 * 0.02562 * 17 7 6 19 19 C 1.46256 * 120.00133 * 179.97438 * 17 7 6 20 20 C 1.35234 * 120.00333 * 179.72358 * 19 17 7 21 21 C 1.46396 * 120.00259 * 180.02562 * 20 19 17 22 22 N 1.30831 * 125.55600 * 180.02562 * 21 20 19 23 23 C 1.30807 * 115.81816 * 180.02562 * 22 21 20 24 24 C 1.34168 * 115.80292 * 0.02562 * 23 22 21 25 25 S 1.71056 * 109.15337 * 359.72441 * 24 23 22 26 26 H 1.09005 * 109.47189 * 296.03772 * 1 2 3 27 27 H 1.08997 * 109.47351 * 56.04813 * 1 2 3 28 28 H 1.09002 * 109.46880 * 176.04312 * 1 2 3 29 29 H 1.09003 * 109.47116 * 183.95559 * 3 2 1 30 30 H 1.09001 * 109.47152 * 303.95499 * 3 2 1 31 31 H 1.09007 * 109.47193 * 63.95411 * 3 2 1 32 32 H 1.08996 * 109.47091 * 306.05291 * 4 2 1 33 33 H 1.08994 * 109.47275 * 186.04511 * 4 2 1 34 34 H 1.09001 * 109.46758 * 59.99929 * 5 4 2 35 35 H 1.08999 * 109.46948 * 300.00409 * 5 4 2 36 36 H 1.09004 * 109.46895 * 59.99992 * 6 5 4 37 37 H 1.08997 * 109.47106 * 300.00478 * 6 5 4 38 38 H 1.09000 * 109.47006 * 30.00140 * 8 7 6 39 39 H 1.09004 * 109.46828 * 149.99522 * 8 7 6 40 40 H 0.96994 * 120.00231 * 180.02562 * 12 11 9 41 41 H 1.08000 * 119.99280 * 0.02562 * 19 17 7 42 42 H 1.08004 * 119.99732 * 0.02562 * 20 19 17 43 43 H 1.08001 * 122.09617 * 180.02562 * 23 22 21 44 44 H 1.08005 * 125.41658 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2426 0.9703 6 6 2.1804 -3.0405 2.1547 7 7 1.8315 -4.4543 1.9949 8 6 0.5750 -4.9657 2.5480 9 6 0.8045 -5.4422 3.9591 10 1 1.7879 -5.3715 4.3997 11 6 -0.2410 -5.9693 4.6873 12 7 -1.4385 -6.0558 4.1506 13 14 0.0435 -6.5606 6.4362 14 1 1.4680 -6.3556 6.8025 15 1 -0.8226 -5.7917 7.3658 16 1 -0.2885 -8.0049 6.5307 17 6 2.6663 -5.2844 1.3389 18 8 3.7105 -4.8596 0.8797 19 6 2.3183 -6.6960 1.1798 20 6 3.1533 -7.5278 0.5167 21 6 2.8047 -8.9406 0.3570 22 7 3.5290 -9.8378 -0.2612 23 6 3.0335 -11.0480 -0.2911 24 6 1.8477 -11.2087 0.3157 25 16 1.3448 -9.7107 0.9706 26 1 -0.3634 0.4511 0.9234 27 1 -0.3634 0.5739 -0.8524 28 1 -0.3633 -1.0252 -0.0709 29 1 3.0827 1.3434 -0.0709 30 1 1.5897 1.9164 -0.8524 31 1 1.7043 1.8724 0.9233 32 1 1.5611 -0.3873 2.0627 33 1 3.0797 -0.6610 1.1756 34 1 2.0659 -2.6213 0.0450 35 1 0.5473 -2.3475 0.9322 36 1 1.7465 -2.6619 3.0802 37 1 3.2647 -2.9355 2.1923 38 1 -0.1713 -4.1713 2.5495 39 1 0.2205 -5.7960 1.9372 40 1 -2.1740 -6.4263 4.6630 41 1 1.3920 -7.0730 1.5876 42 1 4.0775 -7.1498 0.1050 43 1 3.5467 -11.8665 -0.7740 44 1 1.3001 -12.1372 0.3837 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520696858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:29 Heat of formation + Delta-G solvation = 12.689372 kcal Electronic energy + Delta-G solvation = -24491.700447 eV Core-core repulsion = 20956.775977 eV Total energy + Delta-G solvation = -3534.924470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92515 -40.49522 -38.65312 -36.91257 -35.17374 -34.61614 -32.95872 -30.77641 -29.23794 -28.47509 -27.87215 -26.43988 -24.95664 -24.27041 -22.66011 -21.74655 -20.99757 -19.86661 -18.81971 -18.54063 -18.12935 -17.21358 -16.71031 -16.48079 -16.28234 -16.18916 -15.92257 -15.57713 -15.33395 -15.14696 -14.72913 -14.46643 -14.33788 -14.16178 -13.62644 -13.41202 -13.23350 -13.12453 -13.02370 -12.71978 -12.62679 -12.55549 -12.41011 -12.36894 -12.28122 -12.02692 -11.66551 -11.55444 -11.46415 -10.94767 -10.86068 -10.55715 -10.53108 -9.58486 -9.30911 -9.27753 -8.18527 -6.32448 -0.94583 0.26925 0.59669 0.79771 1.40892 1.45456 1.54899 1.87283 2.18670 2.38443 2.46019 3.02082 3.12180 3.14711 3.83094 3.96593 4.08587 4.13173 4.22255 4.25729 4.33916 4.41995 4.45809 4.48133 4.53009 4.63208 4.67988 4.75746 4.81780 4.86940 4.90309 5.01505 5.02769 5.06557 5.18259 5.19958 5.29078 5.31338 5.68016 5.84262 6.05622 6.07076 6.13111 6.51989 6.62033 6.81109 7.24848 7.40602 8.87068 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008902 B = 0.003849 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3144.611934 B = 7272.632792 C = 9614.797004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.566 5.566 3 C 0.025 3.975 4 C 0.066 3.934 5 C -0.114 4.114 6 C 0.121 3.879 7 N -0.588 5.588 8 C 0.250 3.750 9 C -0.546 4.546 10 H 0.051 0.949 11 C 0.029 3.971 12 N -0.915 5.915 13 Si 0.948 3.052 14 H -0.274 1.274 15 H -0.278 1.278 16 H -0.276 1.276 17 C 0.544 3.456 18 O -0.589 6.589 19 C -0.168 4.168 20 C -0.003 4.003 21 C 0.036 3.964 22 N -0.467 5.467 23 C 0.017 3.983 24 C -0.269 4.269 25 S 0.180 5.820 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.029 0.971 32 H 0.041 0.959 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.026 0.974 39 H 0.032 0.968 40 H 0.268 0.732 41 H 0.136 0.864 42 H 0.149 0.851 43 H 0.205 0.795 44 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -0.045 -6.771 7.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.290 5.290 3 C -0.123 4.123 4 C -0.063 4.063 5 C -0.153 4.153 6 C -0.003 4.003 7 N -0.316 5.316 8 C 0.129 3.871 9 C -0.584 4.584 10 H 0.070 0.930 11 C -0.172 4.172 12 N -0.554 5.554 13 Si 0.774 3.226 14 H -0.198 1.198 15 H -0.204 1.204 16 H -0.201 1.201 17 C 0.335 3.665 18 O -0.474 6.474 19 C -0.194 4.194 20 C -0.026 4.026 21 C -0.233 4.233 22 N -0.182 5.182 23 C -0.139 4.139 24 C -0.409 4.409 25 S 0.436 5.564 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.045 0.955 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.154 0.846 42 H 0.167 0.833 43 H 0.221 0.779 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 2.311 0.369 -7.053 7.431 hybrid contribution -0.056 -0.755 1.372 1.567 sum 2.255 -0.385 -5.681 6.124 Atomic orbital electron populations 1.22447 0.86923 1.02267 1.01017 1.61958 1.08740 1.14941 1.43352 1.22425 1.01048 0.87690 1.01109 1.21961 1.00474 0.92265 0.91583 1.21758 1.00764 0.94714 0.98037 1.21352 1.00615 0.79773 0.98523 1.48085 1.21792 1.09171 1.52543 1.19187 0.80251 0.94665 0.92948 1.21669 0.95663 1.41791 0.99284 0.93045 1.25526 0.94655 0.95467 1.01551 1.69996 1.01086 1.45625 1.38660 0.85654 0.78172 0.78334 0.80452 1.19820 1.20399 1.20109 1.18221 0.83171 0.86875 0.78261 1.90710 1.25893 1.78632 1.52132 1.23167 1.01510 0.93535 1.01205 1.21289 0.99189 0.87149 0.94960 1.26101 0.95917 0.97951 1.03361 1.67027 1.32187 1.01888 1.17071 1.22200 0.94707 0.94416 1.02555 1.27089 1.02442 1.05049 1.06356 1.84590 1.21702 1.00951 1.49133 0.95321 0.90120 0.92112 0.90987 0.90271 0.95211 0.94101 0.90213 0.92791 0.92267 0.90244 0.90945 0.95544 0.95006 0.92243 0.84647 0.83326 0.77852 0.76871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.32 127.69 1.19 1.68 16 2 N -0.57 -14.03 5.02 -948.82 -4.76 -18.79 16 3 C 0.03 0.48 9.57 127.69 1.22 1.70 16 4 C 0.07 1.74 4.96 86.31 0.43 2.16 16 5 C -0.11 -3.65 5.46 30.60 0.17 -3.48 16 6 C 0.12 4.38 5.41 86.38 0.47 4.84 16 7 N -0.59 -24.69 2.46 -831.36 -2.04 -26.73 16 8 C 0.25 11.62 4.87 85.63 0.42 12.03 16 9 C -0.55 -27.57 9.39 25.60 0.24 -27.33 16 10 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 11 C 0.03 1.47 5.46 84.66 0.46 1.93 16 12 N -0.91 -48.26 13.29 21.45 0.28 -47.97 16 13 Si 0.95 40.65 29.54 68.60 2.03 42.68 16 14 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 15 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 16 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 17 C 0.54 23.16 7.60 86.33 0.66 23.82 16 18 O -0.59 -26.73 15.81 -4.43 -0.07 -26.80 16 19 C -0.17 -6.48 8.77 23.66 0.21 -6.27 16 20 C 0.00 -0.10 9.74 23.70 0.23 0.13 16 21 C 0.04 1.16 7.41 86.97 0.64 1.81 16 22 N -0.47 -14.13 10.67 -190.92 -2.04 -16.17 16 23 C 0.02 0.38 11.24 83.92 0.94 1.32 16 24 C -0.27 -5.58 11.08 66.89 0.74 -4.84 16 25 S 0.18 4.99 22.05 -56.49 -1.25 3.75 16 26 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.08 1.53 8.12 -2.39 -0.02 1.51 16 28 H 0.06 1.53 6.47 -2.39 -0.02 1.51 16 29 H 0.07 1.29 8.12 -2.39 -0.02 1.27 16 30 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.04 1.03 8.12 -2.39 -0.02 1.01 16 33 H 0.08 2.02 8.06 -2.39 -0.02 2.00 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.06 1.96 6.55 -2.39 -0.02 1.94 16 36 H 0.08 2.82 8.07 -2.38 -0.02 2.80 16 37 H 0.07 2.64 7.42 -2.39 -0.02 2.63 16 38 H 0.03 1.29 8.07 -2.39 -0.02 1.27 16 39 H 0.03 1.53 6.09 -2.38 -0.01 1.51 16 40 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 41 H 0.14 5.40 5.30 -2.91 -0.02 5.38 16 42 H 0.15 5.22 7.52 -2.91 -0.02 5.20 16 43 H 0.20 3.15 8.06 -2.91 -0.02 3.12 16 44 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -61.10 383.15 1.16 -59.94 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.99 Total: 20.60 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 8.02 Total: 9.50 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -8.56 Total: -109.67 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.07 Total: -26.80 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.25 Total: 3.75 kcal Total: -61.10 1.16 -59.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520696858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.629 kcal (2) G-P(sol) polarization free energy of solvation -61.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds