Wall clock time and date at job start Tue Mar 31 2020 13:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00013 * 2 1 4 4 C 1.46903 * 110.99902 * 123.95495 * 2 1 3 5 5 C 1.53006 * 109.46904 * 169.99678 * 4 2 1 6 6 C 1.52998 * 109.46568 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46673 * 180.02562 * 6 5 4 8 8 C 1.46509 * 120.00180 * 269.99947 * 7 6 5 9 9 C 1.50698 * 109.47214 * 270.00008 * 8 7 6 10 10 H 1.08001 * 120.00164 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00196 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99646 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00258 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47281 * 89.99897 * 13 11 9 15 15 H 1.48501 * 109.47263 * 209.99888 * 13 11 9 16 16 H 1.48509 * 109.47087 * 330.00041 * 13 11 9 17 17 C 1.34782 * 120.00298 * 90.00471 * 7 6 5 18 18 O 1.21719 * 119.99485 * 359.97438 * 17 7 6 19 19 C 1.46244 * 120.00258 * 180.02562 * 17 7 6 20 20 C 1.35246 * 120.00265 * 173.28041 * 19 17 7 21 21 C 1.46402 * 119.99521 * 352.32647 * 20 19 17 22 22 N 1.30837 * 125.54958 * 317.39188 * 21 20 19 23 23 C 1.30807 * 115.80978 * 180.02562 * 22 21 20 24 24 C 1.34170 * 115.80827 * 359.97438 * 23 22 21 25 25 S 1.71061 * 109.15150 * 359.73556 * 24 23 22 26 26 H 1.09005 * 109.47355 * 296.04262 * 1 2 3 27 27 H 1.08997 * 109.47533 * 56.04487 * 1 2 3 28 28 H 1.09001 * 109.47268 * 176.04493 * 1 2 3 29 29 H 1.09001 * 109.47105 * 183.95590 * 3 2 1 30 30 H 1.08999 * 109.47467 * 303.95220 * 3 2 1 31 31 H 1.09005 * 109.47370 * 63.95721 * 3 2 1 32 32 H 1.09002 * 109.46981 * 50.00220 * 4 2 1 33 33 H 1.09000 * 109.47399 * 289.99987 * 4 2 1 34 34 H 1.08995 * 109.46500 * 60.00268 * 5 4 2 35 35 H 1.08998 * 109.47390 * 299.99812 * 5 4 2 36 36 H 1.08995 * 109.47432 * 60.00912 * 6 5 4 37 37 H 1.09000 * 109.47627 * 300.00243 * 6 5 4 38 38 H 1.09001 * 109.46444 * 29.99751 * 8 7 6 39 39 H 1.08998 * 109.46953 * 149.99723 * 8 7 6 40 40 H 0.96995 * 119.99468 * 179.97438 * 12 11 9 41 41 H 1.08002 * 120.00038 * 353.27929 * 19 17 7 42 42 H 1.07995 * 120.00377 * 172.60254 * 20 19 17 43 43 H 1.08004 * 122.09541 * 180.02562 * 23 22 21 44 44 H 1.08001 * 125.42414 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 4.0527 -1.7527 2.1554 7 7 5.4977 -1.9336 1.9955 8 6 6.0151 -3.1048 1.2835 9 6 6.2372 -4.2296 2.2615 10 1 6.0148 -4.0866 3.3086 11 6 6.7233 -5.4417 1.8193 12 7 6.9936 -5.6161 0.5440 13 14 6.9979 -6.8362 3.0314 14 1 5.7613 -7.6519 3.1360 15 1 8.1160 -7.6910 2.5576 16 1 7.3346 -6.2745 4.3642 17 6 6.3513 -1.0225 2.5036 18 8 5.9214 -0.0493 3.0948 19 6 7.7937 -1.2028 2.3435 20 6 8.6445 -0.2257 2.7314 21 6 8.1217 1.0749 3.1538 22 7 7.1580 1.7352 2.5646 23 6 6.8418 2.8840 3.1044 24 6 7.5473 3.2327 4.1911 25 16 8.6822 2.0018 4.5421 26 1 -0.3634 0.4512 0.9234 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0827 1.3431 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5089 -1.7407 1.1756 33 1 1.7975 -0.2249 2.0628 34 1 3.9908 0.0192 0.9323 35 1 3.7023 -1.4967 0.0451 36 1 3.5664 -2.7274 2.1939 37 1 3.8548 -1.2111 3.0805 38 1 5.2949 -3.4176 0.5274 39 1 6.9593 -2.8497 0.8025 40 1 7.3359 -6.4687 0.2331 41 1 8.1795 -2.1162 1.9155 42 1 9.7097 -0.4033 2.7253 43 1 6.0612 3.5120 2.7011 44 1 7.4166 4.1435 4.7566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520696859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:33 Heat of formation + Delta-G solvation = 51.364672 kcal Electronic energy + Delta-G solvation = -25248.040911 eV Core-core repulsion = 21714.793527 eV Total energy + Delta-G solvation = -3533.247383 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.58138 -38.69161 -37.51433 -35.17595 -33.43593 -32.72261 -31.46152 -29.21409 -27.57951 -27.37556 -26.36472 -25.08092 -23.15025 -22.94343 -21.59434 -20.56088 -19.37443 -18.35518 -17.33911 -16.51287 -16.42083 -15.75512 -15.45906 -15.15179 -14.88854 -14.62545 -14.35465 -14.24019 -13.81670 -13.66647 -13.45854 -13.12744 -12.61518 -12.38583 -12.32504 -12.10681 -11.99015 -11.73787 -11.60088 -11.34513 -11.29773 -11.18567 -11.15076 -10.87668 -10.69558 -10.21408 -10.04717 -9.93348 -9.72653 -9.36895 -9.09086 -8.81228 -8.54668 -8.30623 -8.00798 -7.61089 -6.17999 -4.25977 0.66837 1.46157 1.98627 2.16393 3.22665 3.30248 3.33573 3.42506 3.86607 4.05485 4.19893 4.34905 4.57955 5.10927 5.14977 5.18530 5.29068 5.32187 5.33172 5.41538 5.44713 5.60184 5.68313 5.71945 5.77014 5.81426 5.82235 5.91384 5.99580 6.06637 6.22993 6.35843 6.47443 6.57057 6.66511 6.69847 6.83628 7.08411 7.11439 7.21430 7.59853 7.77590 8.06131 8.13794 8.39044 8.81010 9.11038 9.42457 10.88135 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.006589 B = 0.005482 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4248.560279 B = 5106.732139 C = 8854.451622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.127 4.127 6 C 0.126 3.874 7 N -0.587 5.587 8 C 0.236 3.764 9 C -0.538 4.538 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.895 3.105 14 H -0.280 1.280 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.536 3.464 18 O -0.548 6.548 19 C -0.111 4.111 20 C -0.067 4.067 21 C 0.109 3.891 22 N -0.407 5.407 23 C 0.046 3.954 24 C -0.300 4.300 25 S 0.106 5.894 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.022 0.978 32 H 0.074 0.926 33 H 0.032 0.968 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.038 0.962 39 H 0.039 0.961 40 H 0.265 0.735 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.162 0.838 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.310 13.405 2.592 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.125 4.125 4 C -0.068 4.068 5 C -0.166 4.166 6 C 0.002 3.998 7 N -0.317 5.317 8 C 0.116 3.884 9 C -0.577 4.577 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.206 1.206 15 H -0.211 1.211 16 H -0.198 1.198 17 C 0.325 3.675 18 O -0.429 6.429 19 C -0.137 4.137 20 C -0.091 4.091 21 C -0.165 4.165 22 N -0.119 5.119 23 C -0.110 4.110 24 C -0.440 4.440 25 S 0.364 5.636 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.179 0.821 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.825 13.225 2.660 13.612 hybrid contribution -0.953 0.000 1.036 1.407 sum -2.777 13.224 3.696 14.009 Atomic orbital electron populations 1.22366 0.87767 1.02128 1.00063 1.61968 1.07385 1.13985 1.43763 1.22415 1.01602 0.88642 0.99841 1.22077 0.96189 0.97861 0.90714 1.21929 0.93486 1.01342 0.99881 1.21137 0.81361 0.99868 0.97445 1.48095 1.05184 1.23935 1.54445 1.19469 0.95426 0.81328 0.92173 1.21525 1.44395 0.96900 0.94876 0.92126 1.24937 0.95083 0.98481 0.95247 1.69927 1.44052 1.25201 1.13658 0.86533 0.77953 0.81900 0.81316 1.20562 1.21051 1.19775 1.18202 0.87104 0.82398 0.79747 1.90772 1.79126 1.29648 1.43329 1.23738 0.93820 0.99650 0.96542 1.21395 0.99174 0.88592 0.99902 1.25987 0.95957 0.99532 0.95050 1.67054 1.09246 1.04854 1.30749 1.21607 1.01322 0.93752 0.94364 1.26234 1.05990 1.06445 1.05344 1.83603 1.35941 1.12495 1.31570 0.95990 0.91658 0.91379 0.90730 0.91857 0.95915 0.90736 0.94998 0.91618 0.90990 0.90619 0.91420 0.94441 0.94347 0.92498 0.82721 0.83541 0.82083 0.81451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.06 0.57 0.85 16 2 N -0.55 -7.43 5.02 -251.26 -1.26 -8.69 16 3 C 0.02 0.29 9.32 60.06 0.56 0.85 16 4 C 0.06 0.86 4.96 -3.82 -0.02 0.84 16 5 C -0.13 -2.13 5.46 -26.73 -0.15 -2.28 16 6 C 0.13 2.35 5.41 -4.04 -0.02 2.33 16 7 N -0.59 -12.34 2.46 -176.76 -0.43 -12.77 16 8 C 0.24 5.50 4.83 -5.19 -0.03 5.47 16 9 C -0.54 -13.69 9.39 -34.44 -0.32 -14.01 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -24.03 13.29 55.43 0.74 -23.30 16 13 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 14 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 17 C 0.54 11.25 7.40 -13.04 -0.10 11.16 16 18 O -0.55 -12.13 12.11 5.17 0.06 -12.07 16 19 C -0.11 -2.05 9.20 -37.43 -0.34 -2.39 16 20 C -0.07 -1.06 10.23 -37.36 -0.38 -1.45 16 21 C 0.11 1.82 5.84 -14.69 -0.09 1.73 16 22 N -0.41 -7.38 7.80 -11.69 -0.09 -7.47 16 23 C 0.05 0.70 11.24 -19.42 -0.22 0.49 16 24 C -0.30 -3.97 11.08 29.30 0.32 -3.64 16 25 S 0.11 1.44 23.20 -107.50 -2.49 -1.06 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 28 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 29 H 0.07 1.03 6.47 -51.93 -0.34 0.69 16 30 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 31 H 0.02 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 1.02 8.06 -51.93 -0.42 0.60 16 33 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.07 1.19 6.55 -51.93 -0.34 0.85 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 37 H 0.07 1.29 7.42 -51.93 -0.39 0.90 16 38 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 39 H 0.04 0.91 6.19 -51.93 -0.32 0.59 16 40 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.16 2.87 6.33 -52.49 -0.33 2.53 16 42 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 43 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 44 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -29.82 378.49 -9.84 -39.66 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.74 Total: 3.27 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -0.30 Total: 1.55 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -1.05 Total: -52.23 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.49 Total: -1.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.82 -9.84 -39.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520696859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.028 kcal (2) G-P(sol) polarization free energy of solvation -29.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds