Wall clock time and date at job start Tue Mar 31 2020 13:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46891 * 111.00013 * 2 1 4 4 C 1.46903 * 110.99902 * 123.95495 * 2 1 3 5 5 C 1.53006 * 109.46904 * 169.99678 * 4 2 1 6 6 C 1.52998 * 109.46568 * 179.97438 * 5 4 2 7 7 N 1.46500 * 109.46673 * 180.02562 * 6 5 4 8 8 C 1.46509 * 120.00180 * 269.99947 * 7 6 5 9 9 C 1.50698 * 109.47214 * 270.00008 * 8 7 6 10 10 H 1.08001 * 120.00164 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00196 * 179.97438 * 9 8 7 12 12 N 1.31519 * 119.99646 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 120.00258 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47281 * 89.99897 * 13 11 9 15 15 H 1.48501 * 109.47263 * 209.99888 * 13 11 9 16 16 H 1.48509 * 109.47087 * 330.00041 * 13 11 9 17 17 C 1.34782 * 120.00298 * 90.00471 * 7 6 5 18 18 O 1.21719 * 119.99485 * 359.97438 * 17 7 6 19 19 C 1.46244 * 120.00258 * 180.02562 * 17 7 6 20 20 C 1.35246 * 120.00265 * 173.28041 * 19 17 7 21 21 C 1.46402 * 119.99521 * 352.32647 * 20 19 17 22 22 N 1.30837 * 125.54958 * 317.39188 * 21 20 19 23 23 C 1.30807 * 115.80978 * 180.02562 * 22 21 20 24 24 C 1.34170 * 115.80827 * 359.97438 * 23 22 21 25 25 S 1.71061 * 109.15150 * 359.73556 * 24 23 22 26 26 H 1.09005 * 109.47355 * 296.04262 * 1 2 3 27 27 H 1.08997 * 109.47533 * 56.04487 * 1 2 3 28 28 H 1.09001 * 109.47268 * 176.04493 * 1 2 3 29 29 H 1.09001 * 109.47105 * 183.95590 * 3 2 1 30 30 H 1.08999 * 109.47467 * 303.95220 * 3 2 1 31 31 H 1.09005 * 109.47370 * 63.95721 * 3 2 1 32 32 H 1.09002 * 109.46981 * 50.00220 * 4 2 1 33 33 H 1.09000 * 109.47399 * 289.99987 * 4 2 1 34 34 H 1.08995 * 109.46500 * 60.00268 * 5 4 2 35 35 H 1.08998 * 109.47390 * 299.99812 * 5 4 2 36 36 H 1.08995 * 109.47432 * 60.00912 * 6 5 4 37 37 H 1.09000 * 109.47627 * 300.00243 * 6 5 4 38 38 H 1.09001 * 109.46444 * 29.99751 * 8 7 6 39 39 H 1.08998 * 109.46953 * 149.99723 * 8 7 6 40 40 H 0.96995 * 119.99468 * 179.97438 * 12 11 9 41 41 H 1.08002 * 120.00038 * 353.27929 * 19 17 7 42 42 H 1.07995 * 120.00377 * 172.60254 * 20 19 17 43 43 H 1.08004 * 122.09541 * 180.02562 * 23 22 21 44 44 H 1.08001 * 125.42414 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 4.0527 -1.7527 2.1554 7 7 5.4977 -1.9336 1.9955 8 6 6.0151 -3.1048 1.2835 9 6 6.2372 -4.2296 2.2615 10 1 6.0148 -4.0866 3.3086 11 6 6.7233 -5.4417 1.8193 12 7 6.9936 -5.6161 0.5440 13 14 6.9979 -6.8362 3.0314 14 1 5.7613 -7.6519 3.1360 15 1 8.1160 -7.6910 2.5576 16 1 7.3346 -6.2745 4.3642 17 6 6.3513 -1.0225 2.5036 18 8 5.9214 -0.0493 3.0948 19 6 7.7937 -1.2028 2.3435 20 6 8.6445 -0.2257 2.7314 21 6 8.1217 1.0749 3.1538 22 7 7.1580 1.7352 2.5646 23 6 6.8418 2.8840 3.1044 24 6 7.5473 3.2327 4.1911 25 16 8.6822 2.0018 4.5421 26 1 -0.3634 0.4512 0.9234 27 1 -0.3634 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0827 1.3431 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5089 -1.7407 1.1756 33 1 1.7975 -0.2249 2.0628 34 1 3.9908 0.0192 0.9323 35 1 3.7023 -1.4967 0.0451 36 1 3.5664 -2.7274 2.1939 37 1 3.8548 -1.2111 3.0805 38 1 5.2949 -3.4176 0.5274 39 1 6.9593 -2.8497 0.8025 40 1 7.3359 -6.4687 0.2331 41 1 8.1795 -2.1162 1.9155 42 1 9.7097 -0.4033 2.7253 43 1 6.0612 3.5120 2.7011 44 1 7.4166 4.1435 4.7566 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520696859.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:32 Heat of formation + Delta-G solvation = 33.661952 kcal Electronic energy + Delta-G solvation = -25248.808558 eV Core-core repulsion = 21714.793527 eV Total energy + Delta-G solvation = -3534.015031 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.141 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.99903 -40.04431 -38.64627 -36.79265 -34.97287 -34.40345 -32.93037 -30.41037 -29.19732 -28.52024 -27.72958 -26.33691 -24.90395 -24.30502 -22.86236 -21.79418 -20.74262 -19.55192 -18.92487 -18.38912 -17.89417 -17.18743 -16.62193 -16.42678 -16.24884 -16.12816 -15.59629 -15.53954 -15.28426 -14.90134 -14.67195 -14.50967 -14.21569 -13.85264 -13.61515 -13.43363 -13.27001 -13.15949 -12.90051 -12.83512 -12.64892 -12.50764 -12.42198 -12.35715 -12.34634 -11.93169 -11.66331 -11.51831 -11.19736 -10.75201 -10.53253 -10.41971 -10.03843 -9.38032 -9.34146 -9.18870 -8.16158 -6.31664 -0.55804 0.27905 0.84194 0.94816 1.44012 1.46340 1.55899 2.21502 2.33879 2.47405 2.58346 3.03987 3.13438 3.43648 3.80532 3.99922 4.09895 4.20410 4.22999 4.37024 4.40832 4.43484 4.48012 4.58857 4.61190 4.64312 4.66493 4.73694 4.77791 4.95555 4.97393 4.99028 5.06992 5.10928 5.23567 5.28870 5.31118 5.39252 5.70539 5.92726 6.02622 6.09690 6.10576 6.63236 6.87109 6.99550 7.37308 7.52039 8.88852 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.006589 B = 0.005482 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4248.560279 B = 5106.732139 C = 8854.451622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.564 5.564 3 C 0.026 3.974 4 C 0.068 3.932 5 C -0.109 4.109 6 C 0.128 3.872 7 N -0.596 5.596 8 C 0.254 3.746 9 C -0.544 4.544 10 H 0.051 0.949 11 C 0.024 3.976 12 N -0.919 5.919 13 Si 0.956 3.044 14 H -0.277 1.277 15 H -0.279 1.279 16 H -0.271 1.271 17 C 0.532 3.468 18 O -0.564 6.564 19 C -0.157 4.157 20 C -0.029 4.029 21 C 0.057 3.943 22 N -0.440 5.440 23 C 0.015 3.985 24 C -0.284 4.284 25 S 0.169 5.831 26 H 0.028 0.972 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.025 0.975 32 H 0.082 0.918 33 H 0.034 0.966 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.017 0.983 39 H 0.031 0.969 40 H 0.268 0.732 41 H 0.147 0.853 42 H 0.187 0.813 43 H 0.174 0.826 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.037 14.535 4.048 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.288 5.288 3 C -0.122 4.122 4 C -0.060 4.060 5 C -0.148 4.148 6 C 0.004 3.996 7 N -0.325 5.325 8 C 0.133 3.867 9 C -0.583 4.583 10 H 0.069 0.931 11 C -0.177 4.177 12 N -0.558 5.558 13 Si 0.782 3.218 14 H -0.203 1.203 15 H -0.204 1.204 16 H -0.195 1.195 17 C 0.323 3.677 18 O -0.445 6.445 19 C -0.183 4.183 20 C -0.052 4.052 21 C -0.215 4.215 22 N -0.153 5.153 23 C -0.141 4.141 24 C -0.424 4.424 25 S 0.426 5.574 26 H 0.047 0.953 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.044 0.956 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.035 0.965 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.164 0.836 42 H 0.204 0.796 43 H 0.191 0.809 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.559 14.359 4.116 15.018 hybrid contribution -0.996 -0.138 0.666 1.206 sum -2.555 14.220 4.782 15.219 Atomic orbital electron populations 1.22430 0.85814 1.02917 1.01090 1.61952 1.09228 1.14387 1.43238 1.22387 1.00467 0.88495 1.00840 1.21945 0.94180 0.98617 0.91292 1.21707 0.95364 0.99622 0.98151 1.21186 0.80499 0.99946 0.97993 1.48106 1.06169 1.23571 1.54700 1.19074 0.94422 0.81709 0.91449 1.21656 1.44306 0.97722 0.94601 0.93113 1.25625 0.94765 1.00568 0.96694 1.70020 1.44775 1.25884 1.15142 0.85581 0.77911 0.79070 0.79254 1.20279 1.20432 1.19536 1.18606 0.88136 0.81861 0.79104 1.90740 1.79675 1.30017 1.44115 1.23512 0.92779 1.00971 1.01041 1.21929 1.00675 0.87360 0.95260 1.26170 0.97252 1.00527 0.97579 1.67010 1.09832 1.06077 1.32402 1.21891 1.02760 0.93763 0.95650 1.26751 1.04353 1.07192 1.04065 1.83339 1.34462 1.10819 1.28772 0.95301 0.90138 0.90859 0.92693 0.89946 0.95612 0.89946 0.94805 0.93282 0.92579 0.90768 0.91878 0.96476 0.95150 0.92295 0.83555 0.79570 0.80855 0.77966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.57 127.69 1.22 1.73 16 2 N -0.56 -15.01 5.02 -948.84 -4.76 -19.77 16 3 C 0.03 0.65 9.32 127.69 1.19 1.84 16 4 C 0.07 1.96 4.96 86.30 0.43 2.39 16 5 C -0.11 -3.83 5.46 30.60 0.17 -3.67 16 6 C 0.13 4.97 5.41 86.38 0.47 5.44 16 7 N -0.60 -26.26 2.46 -831.36 -2.04 -28.30 16 8 C 0.25 12.42 4.83 85.63 0.41 12.83 16 9 C -0.54 -28.38 9.39 25.60 0.24 -28.14 16 10 H 0.05 2.70 7.81 -2.91 -0.02 2.68 16 11 C 0.02 1.25 5.46 84.65 0.46 1.71 16 12 N -0.92 -50.39 13.29 21.45 0.28 -50.10 16 13 Si 0.96 41.50 29.54 68.60 2.03 43.52 16 14 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 15 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 C 0.53 23.18 7.40 86.32 0.64 23.82 16 18 O -0.56 -25.61 12.11 -4.41 -0.05 -25.66 16 19 C -0.16 -5.95 9.20 23.66 0.22 -5.74 16 20 C -0.03 -0.91 10.23 23.71 0.24 -0.67 16 21 C 0.06 1.86 5.84 86.97 0.51 2.37 16 22 N -0.44 -15.90 7.80 -190.91 -1.49 -17.39 16 23 C 0.02 0.45 11.24 83.92 0.94 1.39 16 24 C -0.28 -6.68 11.08 66.89 0.74 -5.94 16 25 S 0.17 4.09 23.20 -56.49 -1.31 2.78 16 26 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 27 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 28 H 0.07 1.40 8.12 -2.39 -0.02 1.38 16 29 H 0.05 1.56 6.47 -2.39 -0.02 1.54 16 30 H 0.08 1.69 8.12 -2.39 -0.02 1.67 16 31 H 0.03 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 2.23 8.06 -2.39 -0.02 2.21 16 33 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 34 H 0.05 1.87 6.55 -2.39 -0.02 1.86 16 35 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 2.86 8.07 -2.39 -0.02 2.84 16 37 H 0.06 2.50 7.42 -2.39 -0.02 2.48 16 38 H 0.02 0.90 8.07 -2.39 -0.02 0.88 16 39 H 0.03 1.53 6.19 -2.39 -0.01 1.52 16 40 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 41 H 0.15 5.70 6.33 -2.91 -0.02 5.68 16 42 H 0.19 4.00 8.06 -2.91 -0.02 3.98 16 43 H 0.17 4.41 8.06 -2.91 -0.02 4.39 16 44 H 0.20 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -65.19 378.49 1.52 -63.68 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 0.98 Total: 21.87 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 7.88 Total: 9.37 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -8.01 Total: -115.56 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.31 Total: 2.78 kcal Total: -65.19 1.52 -63.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520696859.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.339 kcal (2) G-P(sol) polarization free energy of solvation -65.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds