Wall clock time and date at job start Tue Mar 31 2020 13:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52883 * 109.55040 * 179.84370 * 3 2 1 5 5 C 1.54193 * 110.79159 * 178.50556 * 4 3 2 6 6 C 1.53369 * 109.12495 * 0.49471 * 5 4 3 7 7 C 1.50694 * 110.78888 * 178.11595 * 6 5 4 8 8 O 1.21284 * 120.00337 * 0.63943 * 7 6 5 9 9 N 1.34770 * 120.00084 * 180.64139 * 7 6 5 10 10 C 1.47071 * 136.05935 * 359.62531 * 9 7 6 11 11 C 1.53753 * 87.89140 * 152.96523 * 10 9 7 12 12 O 1.42896 * 114.39453 * 272.68021 * 11 10 9 13 13 C 1.50697 * 114.08656 * 139.78214 * 11 10 9 14 14 H 1.08009 * 119.99777 * 266.56272 * 13 11 10 15 15 C 1.37874 * 120.00168 * 86.56151 * 13 11 10 16 16 N 1.31518 * 119.99933 * 179.97438 * 15 13 11 17 17 Si 1.86797 * 119.99764 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47425 * 90.00050 * 17 15 13 19 19 H 1.48506 * 109.46734 * 209.99811 * 17 15 13 20 20 H 1.48499 * 109.47296 * 329.99476 * 17 15 13 21 21 C 1.47068 * 136.05863 * 180.02562 * 9 7 6 22 22 C 1.53371 * 109.13766 * 300.36375 * 6 5 4 23 23 C 1.52875 * 109.55307 * 300.16060 * 3 2 1 24 24 C 1.52211 * 107.60274 * 56.85057 * 6 5 4 25 25 O 1.20758 * 122.58838 * 120.93048 * 24 6 5 26 26 C 1.52125 * 114.82733 * 300.90913 * 24 6 5 27 27 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 28 28 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 29 29 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.24869 * 298.39715 * 4 3 2 31 31 H 1.09001 * 109.25233 * 57.81920 * 4 3 2 32 32 H 1.09004 * 109.17528 * 240.96722 * 5 4 3 33 33 H 1.09008 * 110.31649 * 120.71884 * 5 4 3 34 34 H 1.08996 * 113.46836 * 267.70153 * 10 9 7 35 35 H 1.09006 * 113.46236 * 38.13751 * 10 9 7 36 36 H 0.96698 * 114.00350 * 273.58352 * 12 11 10 37 37 H 0.97001 * 119.99630 * 180.02562 * 16 15 13 38 38 H 1.08995 * 113.46809 * 321.86451 * 21 9 7 39 39 H 1.09006 * 113.46890 * 92.30544 * 21 9 7 40 40 H 1.08995 * 109.39659 * 180.50373 * 22 6 5 41 41 H 1.09005 * 109.40056 * 300.33785 * 22 6 5 42 42 H 1.09004 * 109.24924 * 302.18206 * 23 3 2 43 43 H 1.08994 * 109.25306 * 61.60407 * 23 3 2 44 44 H 1.08999 * 110.13139 * 240.86293 * 26 24 6 45 45 H 1.09000 * 110.23165 * 119.17990 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5344 1.1870 0.0039 5 6 4.1919 2.5812 -0.0336 6 6 3.0956 3.6535 -0.0507 7 6 3.6981 5.0347 -0.0411 8 8 4.9033 5.1706 -0.0340 9 7 2.8978 6.1191 -0.0405 10 6 1.4479 6.3652 -0.0539 11 6 1.7251 7.6990 0.6588 12 8 1.7800 7.6066 2.0837 13 6 0.8826 8.8468 0.1651 14 1 1.2575 9.4969 -0.6116 15 6 -0.3668 9.0670 0.7050 16 7 -1.1019 10.0690 0.2744 17 14 -1.0149 7.9430 2.0488 18 1 -0.6200 8.4794 3.3760 19 1 -2.4958 7.8729 1.9639 20 1 -0.4442 6.5831 1.8747 21 6 3.0901 7.5771 -0.0333 22 6 2.2148 3.4524 -1.2901 23 6 1.5570 2.0673 -1.2456 24 6 2.2207 3.4369 1.1759 25 8 2.0645 4.2849 2.0213 26 6 1.5579 2.0699 1.2544 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8525 0.6722 0.9105 31 1 3.8524 0.6117 -0.8656 32 1 4.7970 2.6675 -0.9362 33 1 4.8253 2.7246 0.8420 34 1 1.0373 6.4858 -1.0563 35 1 0.8819 5.6572 0.5517 36 1 0.9187 7.6838 2.5164 37 1 -1.9807 10.2241 0.6545 38 1 3.9234 7.9019 0.5897 39 1 3.1120 8.0170 -1.0304 40 1 1.4393 4.2180 -1.3111 41 1 2.8284 3.5336 -2.1873 42 1 1.8442 1.5057 -2.1346 43 1 0.4728 2.1769 -1.2252 44 1 0.4733 2.1784 1.2567 45 1 1.8836 1.5440 2.1519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001528124174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:52 Heat of formation + Delta-G solvation = -104.745772 kcal Electronic energy + Delta-G solvation = -30025.214715 eV Core-core repulsion = 26010.152253 eV Total energy + Delta-G solvation = -4015.062462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.72685 -39.64861 -38.44285 -37.73921 -36.24882 -34.53400 -32.54876 -31.55815 -31.01441 -29.48086 -28.67125 -27.03672 -25.54586 -25.29308 -23.23894 -22.64414 -21.64187 -20.35156 -18.95922 -17.64078 -17.58615 -17.07961 -16.95755 -16.50665 -16.21743 -15.73703 -15.27186 -15.11497 -14.79397 -14.73897 -14.13800 -13.81906 -13.71640 -13.56715 -13.36572 -13.13770 -12.88323 -12.83809 -12.58829 -12.47612 -12.35572 -12.32891 -12.07804 -11.88692 -11.50117 -11.22295 -11.10166 -10.93030 -10.90855 -10.53482 -10.33603 -10.09559 -9.87277 -9.79152 -9.43941 -9.19780 -9.01916 -8.65004 -8.03703 -6.44043 -4.49814 1.87903 2.85171 3.00531 3.08026 3.14128 3.21450 3.35317 3.90698 4.02634 4.19721 4.22916 4.42089 4.48923 4.65924 4.74977 4.86917 4.89062 4.92150 4.97063 5.05524 5.08395 5.10483 5.12228 5.30146 5.41589 5.52056 5.56903 5.59771 5.71448 5.76649 5.85024 5.86900 5.96502 5.97432 6.05036 6.15683 6.20486 6.38220 6.42162 6.60195 6.84414 7.19267 7.40294 8.00996 8.28691 8.52715 8.57484 8.59786 9.14298 10.67898 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.004911 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.152564 B = 5700.678397 C = 6565.402828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.373 6.373 3 C 0.123 3.877 4 C -0.106 4.106 5 C -0.084 4.084 6 C -0.123 4.123 7 C 0.558 3.442 8 O -0.553 6.553 9 N -0.622 5.622 10 C 0.058 3.942 11 C 0.200 3.800 12 O -0.542 6.542 13 C -0.534 4.534 14 H 0.093 0.907 15 C 0.082 3.918 16 N -0.876 5.876 17 Si 0.855 3.145 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.255 1.255 21 C 0.121 3.879 22 C -0.101 4.101 23 C -0.144 4.144 24 C 0.366 3.634 25 O -0.408 6.408 26 C -0.191 4.191 27 H 0.045 0.955 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.350 0.650 37 H 0.271 0.729 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.104 0.896 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.545 -19.650 -3.000 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.292 6.292 3 C 0.084 3.916 4 C -0.144 4.144 5 C -0.122 4.122 6 C -0.127 4.127 7 C 0.346 3.654 8 O -0.432 6.432 9 N -0.354 5.354 10 C -0.065 4.065 11 C 0.158 3.842 12 O -0.353 6.353 13 C -0.571 4.571 14 H 0.111 0.889 15 C -0.123 4.123 16 N -0.511 5.511 17 Si 0.683 3.317 18 H -0.192 1.192 19 H -0.211 1.211 20 H -0.180 1.180 21 C 0.000 4.000 22 C -0.139 4.139 23 C -0.182 4.182 24 C 0.237 3.763 25 O -0.277 6.277 26 C -0.229 4.229 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.202 0.798 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.113 0.887 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.778 -19.413 -2.640 19.788 hybrid contribution -1.496 -0.321 0.754 1.706 sum 1.282 -19.734 -1.886 19.865 Atomic orbital electron populations 1.22850 0.81250 1.02879 1.00574 1.87961 1.19721 1.26572 1.94923 1.21449 0.94324 0.82939 0.92916 1.21686 0.91301 0.97285 1.04106 1.21567 0.95411 0.90274 1.04900 1.21802 0.98005 0.95211 0.97705 1.19106 0.85803 0.83850 0.76596 1.90652 1.13988 1.86190 1.52404 1.49478 1.09631 1.06390 1.69892 1.24549 0.80366 0.99980 1.01591 1.20208 0.93423 0.91499 0.79050 1.86507 1.33461 1.95791 1.19510 1.21168 1.00215 1.12524 1.23241 0.88913 1.24973 0.96520 0.94726 0.96118 1.69854 1.11353 1.28187 1.41711 0.87377 0.78798 0.82318 0.83158 1.19219 1.21093 1.18002 1.23179 0.99052 0.77481 1.00326 1.21603 0.98895 0.97417 0.95937 1.22208 1.01202 0.95922 0.98821 1.24793 0.78523 0.88040 0.84981 1.90579 1.52839 1.45506 1.38778 1.23156 1.02908 0.95846 1.00959 0.93634 0.93417 0.89478 0.90527 0.89939 0.89460 0.90073 0.89006 0.91807 0.79775 0.91883 0.90940 0.88704 0.90237 0.89655 0.89837 0.90749 0.87746 0.87187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.22 101.05 1.03 1.19 16 2 O -0.37 -3.62 10.36 -35.23 -0.36 -3.99 16 3 C 0.12 1.22 0.89 -90.38 -0.08 1.14 16 4 C -0.11 -1.02 5.29 -26.17 -0.14 -1.16 16 5 C -0.08 -1.01 4.46 -25.92 -0.12 -1.13 16 6 C -0.12 -1.81 0.62 -155.68 -0.10 -1.91 16 7 C 0.56 10.85 6.48 -10.99 -0.07 10.78 16 8 O -0.55 -12.11 16.87 5.55 0.09 -12.01 16 9 N -0.62 -12.71 3.35 -185.03 -0.62 -13.33 16 10 C 0.06 1.20 5.02 -8.37 -0.04 1.15 16 11 C 0.20 4.68 1.11 -91.11 -0.10 4.58 16 12 O -0.54 -13.60 13.33 -35.23 -0.47 -14.07 16 13 C -0.53 -13.85 9.27 -34.44 -0.32 -14.17 16 14 H 0.09 2.54 8.06 -52.48 -0.42 2.12 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.88 -24.48 13.96 55.43 0.77 -23.71 16 17 Si 0.85 19.52 24.42 -169.99 -4.15 15.37 16 18 H -0.27 -6.00 7.06 56.52 0.40 -5.60 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.25 -5.66 5.50 56.52 0.31 -5.35 16 21 C 0.12 2.59 8.03 -8.50 -0.07 2.52 16 22 C -0.10 -1.19 4.94 -26.33 -0.13 -1.32 16 23 C -0.14 -1.35 4.67 -26.59 -0.12 -1.47 16 24 C 0.37 5.64 5.56 -27.58 -0.15 5.49 16 25 O -0.41 -8.12 15.36 6.00 0.09 -8.02 16 26 C -0.19 -2.14 4.98 -26.81 -0.13 -2.28 16 27 H 0.05 0.32 6.45 -51.93 -0.34 -0.01 16 28 H 0.05 0.32 6.45 -51.93 -0.34 -0.02 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.07 8.09 -51.92 -0.42 0.65 16 34 H 0.09 1.72 8.06 -51.93 -0.42 1.31 16 35 H 0.06 1.32 5.39 -51.93 -0.28 1.04 16 36 H 0.35 8.47 3.16 45.56 0.14 8.61 16 37 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 39 H 0.10 1.83 8.10 -51.93 -0.42 1.41 16 40 H 0.08 1.02 6.35 -51.93 -0.33 0.69 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.64 6.62 -51.93 -0.34 0.29 16 44 H 0.10 1.07 6.66 -51.93 -0.35 0.72 16 45 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 341.14 15.07 5.14 5.14 Total: -1.00 -32.43 341.14 -6.26 -38.70 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.12 Total: 10.44 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -0.64 Total: 5.49 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.15 Total: -37.04 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -0.65 Total: -38.09 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -4.15 Total: 15.37 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.43 -6.26 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528124174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.049 kcal (2) G-P(sol) polarization free energy of solvation -32.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds