Wall clock time and date at job start Tue Mar 31 2020 13:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52883 * 109.55040 * 179.84370 * 3 2 1 5 5 C 1.54193 * 110.79159 * 178.50556 * 4 3 2 6 6 C 1.53369 * 109.12495 * 0.49471 * 5 4 3 7 7 C 1.50694 * 110.78888 * 178.11595 * 6 5 4 8 8 O 1.21284 * 120.00337 * 0.63943 * 7 6 5 9 9 N 1.34770 * 120.00084 * 180.64139 * 7 6 5 10 10 C 1.47071 * 136.05935 * 359.62531 * 9 7 6 11 11 C 1.53753 * 87.89140 * 152.96523 * 10 9 7 12 12 O 1.42896 * 114.39453 * 272.68021 * 11 10 9 13 13 C 1.50697 * 114.08656 * 139.78214 * 11 10 9 14 14 H 1.08009 * 119.99777 * 266.56272 * 13 11 10 15 15 C 1.37874 * 120.00168 * 86.56151 * 13 11 10 16 16 N 1.31518 * 119.99933 * 179.97438 * 15 13 11 17 17 Si 1.86797 * 119.99764 * 0.02562 * 15 13 11 18 18 H 1.48497 * 109.47425 * 90.00050 * 17 15 13 19 19 H 1.48506 * 109.46734 * 209.99811 * 17 15 13 20 20 H 1.48499 * 109.47296 * 329.99476 * 17 15 13 21 21 C 1.47068 * 136.05863 * 180.02562 * 9 7 6 22 22 C 1.53371 * 109.13766 * 300.36375 * 6 5 4 23 23 C 1.52875 * 109.55307 * 300.16060 * 3 2 1 24 24 C 1.52211 * 107.60274 * 56.85057 * 6 5 4 25 25 O 1.20758 * 122.58838 * 120.93048 * 24 6 5 26 26 C 1.52125 * 114.82733 * 300.90913 * 24 6 5 27 27 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 28 28 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 29 29 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.24869 * 298.39715 * 4 3 2 31 31 H 1.09001 * 109.25233 * 57.81920 * 4 3 2 32 32 H 1.09004 * 109.17528 * 240.96722 * 5 4 3 33 33 H 1.09008 * 110.31649 * 120.71884 * 5 4 3 34 34 H 1.08996 * 113.46836 * 267.70153 * 10 9 7 35 35 H 1.09006 * 113.46236 * 38.13751 * 10 9 7 36 36 H 0.96698 * 114.00350 * 273.58352 * 12 11 10 37 37 H 0.97001 * 119.99630 * 180.02562 * 16 15 13 38 38 H 1.08995 * 113.46809 * 321.86451 * 21 9 7 39 39 H 1.09006 * 113.46890 * 92.30544 * 21 9 7 40 40 H 1.08995 * 109.39659 * 180.50373 * 22 6 5 41 41 H 1.09005 * 109.40056 * 300.33785 * 22 6 5 42 42 H 1.09004 * 109.24924 * 302.18206 * 23 3 2 43 43 H 1.08994 * 109.25306 * 61.60407 * 23 3 2 44 44 H 1.08999 * 110.13139 * 240.86293 * 26 24 6 45 45 H 1.09000 * 110.23165 * 119.17990 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5344 1.1870 0.0039 5 6 4.1919 2.5812 -0.0336 6 6 3.0956 3.6535 -0.0507 7 6 3.6981 5.0347 -0.0411 8 8 4.9033 5.1706 -0.0340 9 7 2.8978 6.1191 -0.0405 10 6 1.4479 6.3652 -0.0539 11 6 1.7251 7.6990 0.6588 12 8 1.7800 7.6066 2.0837 13 6 0.8826 8.8468 0.1651 14 1 1.2575 9.4969 -0.6116 15 6 -0.3668 9.0670 0.7050 16 7 -1.1019 10.0690 0.2744 17 14 -1.0149 7.9430 2.0488 18 1 -0.6200 8.4794 3.3760 19 1 -2.4958 7.8729 1.9639 20 1 -0.4442 6.5831 1.8747 21 6 3.0901 7.5771 -0.0333 22 6 2.2148 3.4524 -1.2901 23 6 1.5570 2.0673 -1.2456 24 6 2.2207 3.4369 1.1759 25 8 2.0645 4.2849 2.0213 26 6 1.5579 2.0699 1.2544 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.8525 0.6722 0.9105 31 1 3.8524 0.6117 -0.8656 32 1 4.7970 2.6675 -0.9362 33 1 4.8253 2.7246 0.8420 34 1 1.0373 6.4858 -1.0563 35 1 0.8819 5.6572 0.5517 36 1 0.9187 7.6838 2.5164 37 1 -1.9807 10.2241 0.6545 38 1 3.9234 7.9019 0.5897 39 1 3.1120 8.0170 -1.0304 40 1 1.4393 4.2180 -1.3111 41 1 2.8284 3.5336 -2.1873 42 1 1.8442 1.5057 -2.1346 43 1 0.4728 2.1769 -1.2252 44 1 0.4733 2.1784 1.2567 45 1 1.8836 1.5440 2.1519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001528124174.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:52 Heat of formation + Delta-G solvation = -129.816881 kcal Electronic energy + Delta-G solvation = -30026.301880 eV Core-core repulsion = 26010.152253 eV Total energy + Delta-G solvation = -4016.149627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.83077 -41.16702 -39.56516 -39.30616 -37.22936 -36.39951 -34.59604 -32.54975 -31.91250 -30.74303 -30.00756 -27.88361 -27.13910 -27.03900 -24.18423 -23.61645 -22.82383 -21.91223 -20.45987 -19.46629 -18.63693 -18.48422 -18.27838 -17.94186 -17.48735 -16.88174 -16.48146 -16.28875 -15.99022 -15.72271 -15.60963 -15.37227 -15.11355 -14.87264 -14.57575 -14.54608 -14.34740 -14.18384 -13.92332 -13.79906 -13.45236 -13.31071 -13.11911 -12.96733 -12.87600 -12.66895 -12.44855 -12.30066 -11.98901 -11.95679 -11.76822 -11.47318 -11.14558 -11.13360 -10.95525 -10.57307 -10.50455 -10.44218 -9.72336 -8.48494 -6.58963 0.70854 1.18549 1.23776 1.31692 1.38355 1.74369 2.10188 2.52015 2.70739 2.85039 3.09564 3.27581 3.34816 3.36670 3.57718 3.75010 3.83504 3.90731 3.99446 4.10570 4.15020 4.25182 4.28548 4.40805 4.43798 4.51334 4.56555 4.58109 4.62006 4.65412 4.72034 4.77132 4.84161 4.90541 4.98864 5.02001 5.05077 5.06892 5.16939 5.19907 5.23866 5.98065 6.19261 6.24368 6.48402 6.63537 6.70644 6.95678 7.09059 8.66670 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.004911 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.152564 B = 5700.678397 C = 6565.402828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.378 6.378 3 C 0.129 3.871 4 C -0.100 4.100 5 C -0.079 4.079 6 C -0.125 4.125 7 C 0.549 3.451 8 O -0.584 6.584 9 N -0.625 5.625 10 C 0.078 3.922 11 C 0.184 3.816 12 O -0.555 6.555 13 C -0.538 4.538 14 H 0.066 0.934 15 C 0.038 3.962 16 N -0.916 5.916 17 Si 0.910 3.090 18 H -0.262 1.262 19 H -0.274 1.274 20 H -0.245 1.245 21 C 0.119 3.881 22 C -0.098 4.098 23 C -0.138 4.138 24 C 0.366 3.634 25 O -0.463 6.463 26 C -0.185 4.185 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.065 0.935 36 H 0.351 0.649 37 H 0.275 0.725 38 H 0.060 0.940 39 H 0.112 0.888 40 H 0.068 0.932 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.087 0.913 44 H 0.119 0.881 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.616 -23.104 -3.566 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.297 6.297 3 C 0.089 3.911 4 C -0.137 4.137 5 C -0.117 4.117 6 C -0.129 4.129 7 C 0.340 3.660 8 O -0.466 6.466 9 N -0.356 5.356 10 C -0.045 4.045 11 C 0.143 3.857 12 O -0.367 6.367 13 C -0.576 4.576 14 H 0.084 0.916 15 C -0.164 4.164 16 N -0.553 5.553 17 Si 0.736 3.264 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.170 1.170 21 C -0.004 4.004 22 C -0.136 4.136 23 C -0.176 4.176 24 C 0.240 3.760 25 O -0.335 6.335 26 C -0.222 4.222 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.204 0.796 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.105 0.895 44 H 0.137 0.863 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.851 -22.902 -3.226 23.202 hybrid contribution -1.121 0.815 0.906 1.655 sum 0.730 -22.087 -2.320 22.221 Atomic orbital electron populations 1.23066 0.80016 1.04173 1.01187 1.87966 1.21046 1.25779 1.94921 1.21351 0.94352 0.83197 0.92220 1.21653 0.91138 0.95394 1.05562 1.21577 0.94668 0.91079 1.04406 1.21930 0.99200 0.92529 0.99261 1.20060 0.85505 0.85262 0.75200 1.90624 1.15414 1.86928 1.53601 1.49498 1.09645 1.06160 1.70337 1.24284 0.80512 0.97726 1.01938 1.20329 0.94457 0.92409 0.78538 1.86507 1.33835 1.95897 1.20431 1.21255 1.00636 1.13071 1.22638 0.91563 1.25627 0.96680 0.95964 0.98111 1.69960 1.12027 1.29981 1.43365 0.86461 0.78633 0.80901 0.80439 1.18853 1.20011 1.16995 1.23177 0.97525 0.78919 1.00769 1.21652 0.98298 0.98952 0.94670 1.22215 1.01736 0.94166 0.99474 1.25437 0.77580 0.89062 0.83903 1.90563 1.54896 1.47562 1.40517 1.23210 1.03348 0.93142 1.02487 0.93374 0.92429 0.88011 0.89775 0.87871 0.88886 0.91841 0.87226 0.91643 0.79600 0.91533 0.92147 0.87042 0.91297 0.88534 0.87735 0.89486 0.86292 0.86076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 10.22 113.37 1.16 1.28 16 2 O -0.38 -5.69 10.36 -148.98 -1.54 -7.23 16 3 C 0.13 2.04 0.89 -10.64 -0.01 2.03 16 4 C -0.10 -1.57 5.29 30.96 0.16 -1.41 16 5 C -0.08 -1.78 4.46 31.12 0.14 -1.64 16 6 C -0.13 -3.50 0.62 -52.94 -0.03 -3.53 16 7 C 0.55 21.25 6.48 87.66 0.57 21.82 16 8 O -0.58 -25.87 16.87 -3.04 -0.05 -25.92 16 9 N -0.62 -25.47 3.35 -858.17 -2.88 -28.35 16 10 C 0.08 3.15 5.02 83.26 0.42 3.57 16 11 C 0.18 8.67 1.11 -11.11 -0.01 8.65 16 12 O -0.56 -28.01 13.33 -148.98 -1.99 -30.00 16 13 C -0.54 -28.44 9.27 25.60 0.24 -28.21 16 14 H 0.07 3.76 8.06 -2.91 -0.02 3.74 16 15 C 0.04 2.03 5.47 84.65 0.46 2.50 16 16 N -0.92 -51.98 13.96 21.45 0.30 -51.68 16 17 Si 0.91 40.09 24.42 68.60 1.68 41.76 16 18 H -0.26 -11.37 7.06 99.48 0.70 -10.67 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 20 H -0.25 -10.38 5.50 99.48 0.55 -9.83 16 21 C 0.12 5.14 8.03 83.18 0.67 5.81 16 22 C -0.10 -2.05 4.94 30.85 0.15 -1.90 16 23 C -0.14 -2.02 4.67 30.69 0.14 -1.88 16 24 C 0.37 10.74 5.56 30.04 0.17 10.91 16 25 O -0.46 -18.22 15.36 -1.44 -0.02 -18.24 16 26 C -0.18 -3.59 4.98 30.54 0.15 -3.44 16 27 H 0.05 0.49 6.45 -2.39 -0.02 0.48 16 28 H 0.06 0.51 6.45 -2.39 -0.02 0.49 16 29 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 33 H 0.06 1.64 8.09 -2.38 -0.02 1.62 16 34 H 0.11 3.98 8.06 -2.39 -0.02 3.96 16 35 H 0.07 2.63 5.39 -2.38 -0.01 2.62 16 36 H 0.35 16.87 3.16 -74.06 -0.23 16.63 16 37 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 38 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.11 4.37 8.10 -2.38 -0.02 4.36 16 40 H 0.07 1.60 6.35 -2.39 -0.02 1.58 16 41 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.09 1.10 6.62 -2.39 -0.02 1.08 16 44 H 0.12 2.02 6.66 -2.39 -0.02 2.01 16 45 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -71.72 341.14 0.50 -71.23 By element: Atomic # 1 Polarization: 33.24 SS G_CDS: 0.63 Total: 33.87 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 4.37 Total: 14.56 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -2.58 Total: -80.02 kcal Atomic # 8 Polarization: -77.79 SS G_CDS: -3.60 Total: -81.39 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.68 Total: 41.76 kcal Total: -71.72 0.50 -71.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001528124174.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.588 kcal (2) G-P(sol) polarization free energy of solvation -71.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds