Wall clock time and date at job start Tue Mar 31 2020 14:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00440 * 2 1 4 4 H 1.08999 * 110.36336 * 332.18226 * 3 2 1 5 5 C 1.54374 * 110.32167 * 94.36522 * 3 2 1 6 6 N 1.48555 * 104.59550 * 142.75130 * 5 3 2 7 7 C 1.48566 * 104.22339 * 320.51584 * 6 5 3 8 8 H 1.08997 * 110.51029 * 280.65865 * 7 6 5 9 9 C 1.50700 * 110.41353 * 158.26002 * 7 6 5 10 10 O 1.21205 * 120.00234 * 344.82880 * 9 7 6 11 11 O 1.34194 * 119.99662 * 164.82622 * 9 7 6 12 12 C 1.36185 * 116.99758 * 180.02562 * 11 9 7 13 13 C 1.40181 * 126.08115 * 270.15444 * 12 11 9 14 14 C 1.50696 * 125.88601 * 359.97438 * 13 12 11 15 15 N 1.30854 * 108.21815 * 180.23624 * 13 12 11 16 16 N 1.40066 * 108.30973 * 359.77456 * 15 13 12 17 17 C 1.46503 * 126.01955 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.46936 * 270.00225 * 17 16 15 19 19 H 1.08002 * 120.00225 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99685 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00177 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99773 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46927 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46836 * 119.99843 * 22 20 18 25 25 H 1.48493 * 109.47100 * 239.99900 * 22 20 18 26 26 C 1.35238 * 107.96143 * 0.02562 * 16 15 13 27 27 C 1.50703 * 126.16313 * 179.97438 * 26 16 15 28 28 C 1.54258 * 110.32420 * 210.00022 * 3 2 1 29 29 H 1.08997 * 109.47477 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46848 * 300.00100 * 1 2 3 31 31 H 1.09003 * 109.47076 * 59.99321 * 1 2 3 32 32 H 1.09004 * 110.40955 * 261.52939 * 5 3 2 33 33 H 1.09004 * 110.41413 * 23.85482 * 5 3 2 34 34 H 1.00900 * 111.00106 * 200.95678 * 6 5 3 35 35 H 1.09006 * 109.46907 * 270.27170 * 14 13 12 36 36 H 1.08990 * 109.47496 * 30.27590 * 14 13 12 37 37 H 1.09000 * 109.46812 * 150.27967 * 14 13 12 38 38 H 1.08998 * 109.47085 * 30.00304 * 17 16 15 39 39 H 1.09004 * 109.47114 * 150.00578 * 17 16 15 40 40 H 0.96998 * 120.00029 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.47152 * 89.99966 * 27 26 16 42 42 H 1.09001 * 109.46980 * 330.00067 * 27 26 16 43 43 H 1.09004 * 109.47113 * 210.00048 * 27 26 16 44 44 H 1.09008 * 110.32190 * 122.20306 * 28 3 2 45 45 H 1.09005 * 110.32395 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3390 2.0196 -0.4769 5 6 2.3291 1.7504 1.4435 6 7 3.6079 2.4980 1.3310 7 6 4.4000 1.7198 0.3439 8 1 4.8485 0.8466 0.8175 9 6 5.4662 2.5866 -0.2749 10 8 5.4103 3.7918 -0.1590 11 8 6.4775 2.0240 -0.9544 12 6 7.4070 2.8644 -1.4876 13 6 7.3630 3.4404 -2.7649 14 6 6.2766 3.2363 -3.7890 15 7 8.4309 4.1813 -2.9165 16 7 9.1885 4.1071 -1.7408 17 6 10.4607 4.7894 -1.4912 18 6 11.5995 3.9047 -1.9289 19 1 11.3960 2.9317 -2.3512 20 6 12.9012 4.3374 -1.7902 21 7 13.1491 5.5224 -1.2765 22 14 14.3128 3.2411 -2.3335 23 1 13.7713 1.9686 -2.8745 24 1 15.0994 3.9323 -3.3864 25 1 15.1897 2.9507 -1.1709 26 6 8.5388 3.2948 -0.8765 27 6 8.9931 2.9294 0.5132 28 6 3.3727 1.2853 -0.7233 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.5409 2.4004 1.8237 33 1 2.4500 0.8820 2.0910 34 1 4.0811 2.5410 2.2211 35 1 6.5230 2.3779 -4.4140 36 1 5.3286 3.0565 -3.2822 37 1 6.1924 4.1269 -4.4118 38 1 10.4889 5.7228 -2.0534 39 1 10.5554 5.0035 -0.4266 40 1 14.0649 5.8266 -1.1786 41 1 8.5948 3.6505 1.2270 42 1 10.0823 2.9412 0.5542 43 1 8.6308 1.9323 0.7634 44 1 3.3701 1.9896 -1.5553 45 1 3.5978 0.2797 -1.0787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574010111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:03 Heat of formation + Delta-G solvation = -42.303826 kcal Electronic energy + Delta-G solvation = -27622.870897 eV Core-core repulsion = 23642.808872 eV Total energy + Delta-G solvation = -3980.062025 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.23691 -40.10614 -39.06469 -36.96127 -35.98272 -34.01294 -32.58765 -30.96843 -30.41538 -29.54570 -29.07655 -26.73756 -26.48144 -25.98755 -23.96289 -22.63821 -21.42183 -20.91007 -19.38216 -19.19756 -17.83770 -17.46394 -17.12472 -16.75250 -16.18695 -15.60787 -15.36949 -15.19102 -14.63709 -14.49693 -14.34803 -14.07285 -13.68908 -13.28488 -13.01996 -12.96590 -12.81650 -12.78046 -12.56123 -12.34013 -12.16644 -12.03585 -11.95744 -11.80507 -11.71455 -11.55131 -11.07384 -11.02660 -10.94281 -10.81878 -10.36446 -10.27255 -10.05554 -9.77424 -9.70214 -9.03617 -8.69559 -8.35498 -7.68845 -6.30856 -4.38999 2.28306 2.35256 2.71378 3.17866 3.23313 3.25568 3.27344 3.34416 3.52387 4.05827 4.16234 4.25904 4.30735 4.64658 4.76404 4.86983 4.93373 4.96569 5.02118 5.04751 5.16063 5.26345 5.29881 5.36224 5.39520 5.43147 5.57041 5.63894 5.75739 5.90672 5.93702 6.04226 6.13039 6.14791 6.28576 6.53810 6.66412 6.77364 6.81128 6.92298 7.00130 7.28976 7.59749 7.80593 7.83536 8.25700 8.44440 8.67771 9.27810 10.76903 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.002562 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.703437 B =10926.197885 C =11178.972488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.382 6.382 3 C 0.084 3.916 4 H 0.080 0.920 5 C 0.018 3.982 6 N -0.640 5.640 7 C 0.080 3.920 8 H 0.089 0.911 9 C 0.443 3.557 10 O -0.470 6.470 11 O -0.254 6.254 12 C -0.103 4.103 13 C 0.058 3.942 14 C -0.063 4.063 15 N -0.280 5.280 16 N -0.313 5.313 17 C 0.257 3.743 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.066 3.934 21 N -0.890 5.890 22 Si 0.908 3.092 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.105 3.895 27 C -0.093 4.093 28 C -0.110 4.110 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.349 0.651 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.268 0.732 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.630 -10.659 5.431 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C 0.025 3.975 4 H 0.098 0.902 5 C -0.111 4.111 6 N -0.272 5.272 7 C -0.031 4.031 8 H 0.107 0.893 9 C 0.283 3.717 10 O -0.353 6.353 11 O -0.166 6.166 12 C -0.157 4.157 13 C -0.107 4.107 14 C -0.121 4.121 15 N -0.105 5.105 16 N -0.093 5.093 17 C 0.140 3.860 18 C -0.578 4.578 19 H 0.084 0.916 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.734 3.266 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.029 4.029 27 C -0.151 4.151 28 C -0.148 4.148 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.166 0.834 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.106 0.894 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -21.810 -8.890 4.295 23.941 hybrid contribution 0.570 -1.398 0.901 1.758 sum -21.240 -10.287 5.197 24.165 Atomic orbital electron populations 1.22823 0.80795 1.02915 1.00176 1.87955 1.19941 1.27204 1.94877 1.22840 0.95009 0.84749 0.94853 0.90232 1.23429 0.93066 0.97348 0.97290 1.63268 1.03937 1.47375 1.12622 1.21916 0.92123 0.94002 0.95057 0.89339 1.24000 0.82056 0.88516 0.77133 1.90774 1.74293 1.15676 1.54599 1.84690 1.32198 1.36822 1.62850 1.17599 0.92920 1.10845 0.94290 1.22253 0.96503 0.96766 0.95192 1.20015 0.93837 1.02487 0.95781 1.77370 1.04746 1.22544 1.05809 1.49175 1.18624 1.33137 1.08379 1.19808 0.74440 0.93330 0.98460 1.21335 0.90004 1.03158 1.43266 0.91554 1.24939 0.98851 0.95384 0.94587 1.69928 1.21043 1.18130 1.43624 0.86274 0.81323 0.80464 0.78491 1.19500 1.20564 1.20604 1.20884 0.93543 0.94123 0.94361 1.20433 1.03570 1.01612 0.89479 1.22341 0.91528 1.03807 0.97100 0.89500 0.93920 0.93762 0.89219 0.92397 0.83410 0.90707 0.91767 0.91003 0.92475 0.92695 0.92193 0.90758 0.89206 0.90498 0.89407 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.85 101.05 1.10 1.26 16 2 O -0.38 -3.20 10.31 -35.23 -0.36 -3.56 16 3 C 0.08 0.69 3.54 -25.35 -0.09 0.60 16 4 H 0.08 0.60 7.82 -51.93 -0.41 0.19 16 5 C 0.02 0.14 7.21 -2.19 -0.02 0.13 16 6 N -0.64 -6.57 6.86 -103.95 -0.71 -7.29 16 7 C 0.08 0.88 3.69 -67.22 -0.25 0.63 16 8 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 9 C 0.44 6.90 7.10 36.01 0.26 7.15 16 10 O -0.47 -9.08 16.32 -19.05 -0.31 -9.39 16 11 O -0.25 -4.35 10.13 -24.24 -0.25 -4.59 16 12 C -0.10 -2.09 5.34 -39.78 -0.21 -2.30 16 13 C 0.06 1.21 7.23 -82.28 -0.59 0.61 16 14 C -0.06 -0.97 10.44 36.00 0.38 -0.60 16 15 N -0.28 -6.67 12.57 33.73 0.42 -6.25 16 16 N -0.31 -7.56 3.60 -58.16 -0.21 -7.77 16 17 C 0.26 6.63 5.83 -5.19 -0.03 6.60 16 18 C -0.54 -14.77 9.39 -34.44 -0.32 -15.10 16 19 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 20 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 21 N -0.89 -24.92 13.29 55.43 0.74 -24.18 16 22 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 23 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.10 2.24 6.95 -82.02 -0.57 1.67 16 27 C -0.09 -1.62 9.87 36.01 0.36 -1.27 16 28 C -0.11 -1.04 6.35 -25.35 -0.16 -1.21 16 29 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.21 8.11 -51.93 -0.42 -0.21 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.35 3.12 8.92 -39.29 -0.35 2.76 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 39 H 0.06 1.40 7.67 -51.93 -0.40 1.01 16 40 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.64 7.73 -51.93 -0.40 1.24 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.09 0.88 7.85 -51.92 -0.41 0.47 16 45 H 0.10 0.87 7.98 -51.93 -0.41 0.46 16 LS Contribution 384.87 15.07 5.80 5.80 Total: -1.00 -33.31 384.87 -7.15 -40.46 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.99 Total: 0.96 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -0.26 Total: -0.12 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 0.24 Total: -45.49 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.92 Total: -17.55 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.31 -7.15 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574010111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.843 kcal (2) G-P(sol) polarization free energy of solvation -33.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds