Wall clock time and date at job start Tue Mar 31 2020 14:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00440 * 2 1 4 4 H 1.08999 * 110.36336 * 332.18226 * 3 2 1 5 5 C 1.54374 * 110.32167 * 94.36522 * 3 2 1 6 6 N 1.48555 * 104.59550 * 142.75130 * 5 3 2 7 7 C 1.48566 * 104.22339 * 320.51584 * 6 5 3 8 8 H 1.08997 * 110.51029 * 280.65865 * 7 6 5 9 9 C 1.50700 * 110.41353 * 158.26002 * 7 6 5 10 10 O 1.21205 * 120.00234 * 344.82880 * 9 7 6 11 11 O 1.34194 * 119.99662 * 164.82622 * 9 7 6 12 12 C 1.36185 * 116.99758 * 180.02562 * 11 9 7 13 13 C 1.40181 * 126.08115 * 270.15444 * 12 11 9 14 14 C 1.50696 * 125.88601 * 359.97438 * 13 12 11 15 15 N 1.30854 * 108.21815 * 180.23624 * 13 12 11 16 16 N 1.40066 * 108.30973 * 359.77456 * 15 13 12 17 17 C 1.46503 * 126.01955 * 180.02562 * 16 15 13 18 18 C 1.50706 * 109.46936 * 270.00225 * 17 16 15 19 19 H 1.08002 * 120.00225 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99685 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00177 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99773 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46927 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46836 * 119.99843 * 22 20 18 25 25 H 1.48493 * 109.47100 * 239.99900 * 22 20 18 26 26 C 1.35238 * 107.96143 * 0.02562 * 16 15 13 27 27 C 1.50703 * 126.16313 * 179.97438 * 26 16 15 28 28 C 1.54258 * 110.32420 * 210.00022 * 3 2 1 29 29 H 1.08997 * 109.47477 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46848 * 300.00100 * 1 2 3 31 31 H 1.09003 * 109.47076 * 59.99321 * 1 2 3 32 32 H 1.09004 * 110.40955 * 261.52939 * 5 3 2 33 33 H 1.09004 * 110.41413 * 23.85482 * 5 3 2 34 34 H 1.00900 * 111.00106 * 200.95678 * 6 5 3 35 35 H 1.09006 * 109.46907 * 270.27170 * 14 13 12 36 36 H 1.08990 * 109.47496 * 30.27590 * 14 13 12 37 37 H 1.09000 * 109.46812 * 150.27967 * 14 13 12 38 38 H 1.08998 * 109.47085 * 30.00304 * 17 16 15 39 39 H 1.09004 * 109.47114 * 150.00578 * 17 16 15 40 40 H 0.96998 * 120.00029 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.47152 * 89.99966 * 27 26 16 42 42 H 1.09001 * 109.46980 * 330.00067 * 27 26 16 43 43 H 1.09004 * 109.47113 * 210.00048 * 27 26 16 44 44 H 1.09008 * 110.32190 * 122.20306 * 28 3 2 45 45 H 1.09005 * 110.32395 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3390 2.0196 -0.4769 5 6 2.3291 1.7504 1.4435 6 7 3.6079 2.4980 1.3310 7 6 4.4000 1.7198 0.3439 8 1 4.8485 0.8466 0.8175 9 6 5.4662 2.5866 -0.2749 10 8 5.4103 3.7918 -0.1590 11 8 6.4775 2.0240 -0.9544 12 6 7.4070 2.8644 -1.4876 13 6 7.3630 3.4404 -2.7649 14 6 6.2766 3.2363 -3.7890 15 7 8.4309 4.1813 -2.9165 16 7 9.1885 4.1071 -1.7408 17 6 10.4607 4.7894 -1.4912 18 6 11.5995 3.9047 -1.9289 19 1 11.3960 2.9317 -2.3512 20 6 12.9012 4.3374 -1.7902 21 7 13.1491 5.5224 -1.2765 22 14 14.3128 3.2411 -2.3335 23 1 13.7713 1.9686 -2.8745 24 1 15.0994 3.9323 -3.3864 25 1 15.1897 2.9507 -1.1709 26 6 8.5388 3.2948 -0.8765 27 6 8.9931 2.9294 0.5132 28 6 3.3727 1.2853 -0.7233 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.5409 2.4004 1.8237 33 1 2.4500 0.8820 2.0910 34 1 4.0811 2.5410 2.2211 35 1 6.5230 2.3779 -4.4140 36 1 5.3286 3.0565 -3.2822 37 1 6.1924 4.1269 -4.4118 38 1 10.4889 5.7228 -2.0534 39 1 10.5554 5.0035 -0.4266 40 1 14.0649 5.8266 -1.1786 41 1 8.5948 3.6505 1.2270 42 1 10.0823 2.9412 0.5542 43 1 8.6308 1.9323 0.7634 44 1 3.3701 1.9896 -1.5553 45 1 3.5978 0.2797 -1.0787 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574010111.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:02 Heat of formation + Delta-G solvation = -65.395043 kcal Electronic energy + Delta-G solvation = -27623.872208 eV Core-core repulsion = 23642.808872 eV Total energy + Delta-G solvation = -3981.063335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.75325 -41.35795 -39.96059 -37.96467 -37.05979 -35.90910 -34.38994 -32.54998 -31.20949 -30.72377 -30.33595 -27.99167 -27.79118 -27.16574 -25.29473 -24.27827 -22.22078 -21.95183 -20.84656 -20.80295 -18.94972 -18.90013 -18.31517 -18.23146 -17.35711 -16.79994 -16.69926 -16.23449 -15.97857 -15.88669 -15.37759 -15.02363 -14.75585 -14.68752 -14.48995 -14.29325 -14.18363 -13.87649 -13.65660 -13.50373 -13.41519 -13.31829 -13.23743 -13.05212 -12.87267 -12.73392 -12.69340 -12.48552 -12.39164 -12.29387 -11.78757 -11.68880 -11.54260 -11.29626 -10.77806 -10.60286 -10.08821 -9.78223 -9.34965 -8.38329 -6.56105 0.75653 1.11065 1.18453 1.35983 1.37720 1.49791 1.63244 2.10767 2.31927 2.68965 2.92519 3.30826 3.42482 3.45068 3.61697 3.71806 3.90776 3.98694 4.07657 4.18414 4.31510 4.38321 4.53577 4.54098 4.57418 4.60101 4.67762 4.70694 4.75354 4.78366 4.79135 4.81166 4.83983 4.92780 4.96629 4.99889 5.18241 5.30265 5.44664 5.48179 5.72739 5.78751 6.04297 6.12204 6.25797 6.53518 6.76271 6.92083 7.15264 8.69312 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027372 B = 0.002562 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.703437 B =10926.197885 C =11178.972488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.397 6.397 3 C 0.087 3.913 4 H 0.085 0.915 5 C 0.024 3.976 6 N -0.658 5.658 7 C 0.088 3.912 8 H 0.112 0.888 9 C 0.448 3.552 10 O -0.511 6.511 11 O -0.249 6.249 12 C -0.103 4.103 13 C 0.058 3.942 14 C -0.061 4.061 15 N -0.325 5.325 16 N -0.340 5.340 17 C 0.274 3.726 18 C -0.555 4.555 19 H 0.052 0.948 20 C 0.022 3.978 21 N -0.918 5.918 22 Si 0.976 3.024 23 H -0.271 1.271 24 H -0.274 1.274 25 H -0.266 1.266 26 C 0.089 3.911 27 C -0.088 4.088 28 C -0.110 4.110 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.355 0.645 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.027 0.973 39 H 0.050 0.950 40 H 0.275 0.725 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.079 0.921 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.128 -12.834 5.967 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.315 6.315 3 C 0.028 3.972 4 H 0.103 0.897 5 C -0.105 4.105 6 N -0.291 5.291 7 C -0.023 4.023 8 H 0.130 0.870 9 C 0.290 3.710 10 O -0.396 6.396 11 O -0.160 6.160 12 C -0.157 4.157 13 C -0.108 4.108 14 C -0.119 4.119 15 N -0.149 5.149 16 N -0.121 5.121 17 C 0.156 3.844 18 C -0.593 4.593 19 H 0.071 0.929 20 C -0.179 4.179 21 N -0.556 5.556 22 Si 0.799 3.201 23 H -0.196 1.196 24 H -0.200 1.200 25 H -0.191 1.191 26 C -0.043 4.043 27 C -0.146 4.146 28 C -0.148 4.148 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.173 0.827 35 H 0.116 0.884 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.045 0.955 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.098 0.902 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -23.341 -11.083 4.848 26.289 hybrid contribution 0.861 -0.743 0.756 1.366 sum -22.480 -11.826 5.605 26.011 Atomic orbital electron populations 1.23008 0.79354 1.03956 1.01009 1.87926 1.21542 1.27103 1.94967 1.22784 0.94414 0.85058 0.94908 0.89662 1.23463 0.92032 0.97709 0.97294 1.63226 1.04822 1.48197 1.12903 1.22018 0.91134 0.93505 0.95663 0.87019 1.24918 0.81680 0.88621 0.75757 1.90766 1.75058 1.17672 1.56086 1.84698 1.32106 1.36197 1.63006 1.17662 0.93395 1.10355 0.94308 1.23089 0.96296 0.95079 0.96362 1.20210 0.92808 1.03807 0.95099 1.77290 1.06241 1.24808 1.06599 1.48948 1.18749 1.34870 1.09497 1.19339 0.75491 0.92206 0.97410 1.21426 0.91097 1.02852 1.43886 0.92924 1.25785 1.01186 0.96696 0.94235 1.70013 1.22027 1.19489 1.44039 0.85242 0.78001 0.78361 0.78489 1.19597 1.19962 1.19073 1.21553 0.93813 0.93510 0.95426 1.20525 1.02844 1.03480 0.87757 1.22367 0.91939 1.03987 0.96536 0.88439 0.92858 0.93180 0.88036 0.91343 0.82728 0.88438 0.90018 0.90263 0.95482 0.93181 0.91613 0.89570 0.90394 0.87669 0.90209 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.85 113.37 1.23 1.42 16 2 O -0.40 -5.60 10.31 -148.98 -1.54 -7.13 16 3 C 0.09 1.21 3.54 31.49 0.11 1.32 16 4 H 0.09 1.08 7.82 -2.39 -0.02 1.06 16 5 C 0.02 0.31 7.21 86.45 0.62 0.93 16 6 N -0.66 -12.15 6.86 -482.80 -3.31 -15.46 16 7 C 0.09 1.74 3.69 44.31 0.16 1.90 16 8 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 9 C 0.45 13.35 7.10 71.24 0.51 13.86 16 10 O -0.51 -19.49 16.32 20.80 0.34 -19.15 16 11 O -0.25 -8.18 10.13 2.23 0.02 -8.16 16 12 C -0.10 -4.18 5.34 22.14 0.12 -4.06 16 13 C 0.06 2.39 7.23 43.18 0.31 2.70 16 14 C -0.06 -1.81 10.44 71.23 0.74 -1.07 16 15 N -0.33 -15.98 12.57 -47.19 -0.59 -16.58 16 16 N -0.34 -17.07 3.60 -337.91 -1.22 -18.29 16 17 C 0.27 14.87 5.83 85.63 0.50 15.37 16 18 C -0.55 -31.34 9.39 25.60 0.24 -31.10 16 19 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 20 C 0.02 1.22 5.46 84.66 0.46 1.68 16 21 N -0.92 -52.22 13.29 21.45 0.28 -51.94 16 22 Si 0.98 43.08 29.54 68.60 2.03 45.11 16 23 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 C 0.09 3.88 6.95 41.43 0.29 4.17 16 27 C -0.09 -3.07 9.87 71.24 0.70 -2.37 16 28 C -0.11 -1.84 6.35 31.49 0.20 -1.64 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.05 0.36 8.11 -2.39 -0.02 0.34 16 32 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.36 5.65 8.92 -89.69 -0.80 4.85 16 35 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 36 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.05 2.70 7.67 -2.39 -0.02 2.68 16 40 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 41 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.08 2.90 7.73 -2.39 -0.02 2.88 16 43 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 44 H 0.08 1.46 7.85 -2.38 -0.02 1.44 16 45 H 0.11 1.61 7.98 -2.38 -0.02 1.60 16 Total: -1.00 -73.55 384.87 2.42 -71.13 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.20 Total: 17.36 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.20 Total: 3.11 kcal Atomic # 7 Polarization: -97.43 SS G_CDS: -4.84 Total: -102.27 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -1.17 Total: -34.44 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -73.55 2.42 -71.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574010111.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.737 kcal (2) G-P(sol) polarization free energy of solvation -73.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds