Wall clock time and date at job start Tue Mar 31 2020 14:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47447 * 280.22033 * 3 2 1 5 5 N 1.46499 * 109.47358 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99924 * 270.00195 * 5 4 3 7 7 C 1.50705 * 109.47216 * 269.99699 * 6 5 4 8 8 H 1.08000 * 119.99622 * 0.02562 * 7 6 5 9 9 C 1.37869 * 119.99822 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99710 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00548 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47282 * 89.99670 * 11 9 7 13 13 H 1.48501 * 109.47577 * 210.00145 * 11 9 7 14 14 H 1.48501 * 109.46718 * 329.99845 * 11 9 7 15 15 C 1.34774 * 119.99886 * 89.99921 * 5 4 3 16 16 O 1.21277 * 119.99864 * 179.97438 * 15 5 4 17 17 C 1.50701 * 120.00086 * 0.02562 * 15 5 4 18 18 N 1.46903 * 109.47187 * 179.97438 * 17 15 5 19 19 C 1.46896 * 110.99870 * 179.97438 * 18 17 15 20 20 H 1.09007 * 110.05747 * 317.39798 * 19 18 17 21 21 C 1.54268 * 110.03245 * 78.81509 * 19 18 17 22 22 C 1.54888 * 104.19524 * 142.89177 * 21 19 18 23 23 C 1.54886 * 102.75040 * 322.06021 * 22 21 19 24 24 C 1.53877 * 110.03201 * 195.98011 * 19 18 17 25 25 H 1.09003 * 110.07448 * 121.40899 * 24 19 18 26 26 C 1.50706 * 110.03149 * 0.02562 * 24 19 18 27 27 O 1.20823 * 119.99707 * 277.58711 * 26 24 19 28 28 O 1.34231 * 119.99681 * 97.31261 * 26 24 19 29 29 H 1.09004 * 109.47189 * 160.21690 * 3 2 1 30 30 H 1.09003 * 109.46674 * 40.22249 * 3 2 1 31 31 H 1.09004 * 109.46682 * 59.99681 * 4 3 2 32 32 H 1.09003 * 109.46934 * 300.00443 * 4 3 2 33 33 H 1.08996 * 109.47364 * 29.99958 * 6 5 4 34 34 H 1.09003 * 109.46846 * 149.99722 * 6 5 4 35 35 H 0.96999 * 120.00407 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46990 * 59.99823 * 17 15 5 37 37 H 1.09001 * 109.46763 * 299.99710 * 17 15 5 38 38 H 1.00900 * 110.99925 * 56.04462 * 18 17 15 39 39 H 1.08999 * 110.48578 * 24.21526 * 21 19 18 40 40 H 1.09001 * 110.48379 * 261.56920 * 21 19 18 41 41 H 1.09003 * 110.75780 * 203.74056 * 22 21 19 42 42 H 1.09006 * 110.91479 * 80.44773 * 22 21 19 43 43 H 1.09005 * 110.48328 * 279.26054 * 23 22 21 44 44 H 1.08997 * 110.49125 * 156.62263 * 23 22 21 45 45 H 0.96698 * 116.99136 * 180.27609 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.2551 1.4196 5 7 4.5832 -0.2550 1.4194 6 6 5.3157 -1.5036 1.1944 7 6 5.5671 -2.1837 2.5156 8 1 5.2159 -1.7312 3.4312 9 6 6.2454 -3.3834 2.5553 10 7 6.4643 -3.9771 3.7082 11 14 6.8534 -4.1655 0.9717 12 1 8.2266 -3.6833 0.6768 13 1 6.8693 -5.6427 1.1234 14 1 5.9474 -3.7924 -0.1442 15 6 5.2570 0.8937 1.6263 16 8 6.4698 0.8937 1.6266 17 6 4.5035 2.1780 1.8583 18 7 5.4581 3.2769 2.0566 19 6 4.7577 4.5477 2.2856 20 1 3.9171 4.6405 1.5978 21 6 4.2583 4.6207 3.7433 22 6 4.4502 6.1065 4.1366 23 6 5.7846 6.4744 3.4418 24 6 5.7282 5.7263 2.0939 25 1 5.3595 6.3914 1.3129 26 6 7.0977 5.2134 1.7298 27 8 7.8508 4.8348 2.5954 28 8 7.4787 5.1721 0.4434 29 1 2.9710 0.9679 -0.3478 30 1 2.9716 -0.7839 -0.6637 31 1 2.7552 -1.2223 1.7673 32 1 2.7545 0.5295 2.0832 33 1 4.7266 -2.1601 0.5541 34 1 6.2681 -1.2842 0.7117 35 1 6.9418 -4.8209 3.7363 36 1 3.8773 2.0768 2.7446 37 1 3.8765 2.3927 0.9929 38 1 6.0929 3.3498 1.2757 39 1 4.8586 3.9757 4.3850 40 1 3.2056 4.3439 3.8002 41 1 4.5358 6.2118 5.2182 42 1 3.6337 6.7189 3.7539 43 1 6.6314 6.1288 4.0348 44 1 5.8459 7.5504 3.2787 45 1 8.3647 4.8315 0.2588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574242269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:28 Heat of formation + Delta-G solvation = -95.748550 kcal Electronic energy + Delta-G solvation = -27888.740647 eV Core-core repulsion = 23906.361084 eV Total energy + Delta-G solvation = -3982.379562 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.83971 -39.43445 -38.09972 -36.95558 -36.05402 -35.39301 -34.31127 -32.77008 -31.04742 -29.98982 -29.03870 -27.59471 -25.29678 -24.05183 -23.30805 -22.15223 -20.86120 -19.74832 -18.63212 -18.12502 -17.82650 -17.13309 -16.85004 -16.68949 -16.27841 -15.75252 -15.43599 -15.14651 -14.83385 -14.70329 -14.33212 -14.05381 -13.84253 -13.69162 -13.23362 -12.96738 -12.69113 -12.53579 -12.39304 -12.31675 -12.14633 -11.82241 -11.70087 -11.60256 -11.56683 -11.38452 -11.29820 -11.22132 -11.08999 -10.88449 -10.83844 -10.57015 -10.48265 -10.22089 -9.58733 -9.14082 -8.61428 -8.52890 -7.91844 -6.10535 -4.10149 2.18094 2.63166 2.71555 2.91241 3.18702 3.26266 3.31267 3.33960 3.43027 3.89515 4.15447 4.21610 4.23942 4.36753 4.75264 4.83721 4.93966 5.00927 5.03879 5.08631 5.10157 5.15714 5.22676 5.22869 5.32133 5.37434 5.40299 5.51422 5.63764 5.70247 5.74915 5.81415 5.95344 5.98415 6.19506 6.49164 6.53297 6.76905 6.88758 7.16701 7.19666 7.47827 7.56428 7.88549 8.06769 8.42993 8.83766 8.94261 9.48733 11.02838 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.003811 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.209620 B = 7346.017789 C = 8812.070340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.594 5.594 6 C 0.216 3.784 7 C -0.531 4.531 8 H 0.076 0.924 9 C 0.073 3.927 10 N -0.895 5.895 11 Si 0.875 3.125 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.266 1.266 15 C 0.508 3.492 16 O -0.515 6.515 17 C 0.040 3.960 18 N -0.665 5.665 19 C 0.096 3.904 20 H 0.058 0.942 21 C -0.119 4.119 22 C -0.120 4.120 23 C -0.114 4.114 24 C -0.084 4.084 25 H 0.103 0.897 26 C 0.480 3.520 27 O -0.486 6.486 28 O -0.526 6.526 29 H 0.105 0.895 30 H 0.116 0.884 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.032 0.968 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.346 0.654 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 20.730 -6.800 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.103 4.103 3 C -0.092 4.092 4 C -0.009 4.009 5 N -0.326 5.326 6 C 0.096 3.904 7 C -0.569 4.569 8 H 0.094 0.906 9 C -0.129 4.129 10 N -0.533 5.533 11 Si 0.702 3.298 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.294 3.706 16 O -0.390 6.390 17 C -0.093 4.093 18 N -0.300 5.300 19 C -0.014 4.014 20 H 0.076 0.924 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.151 4.151 24 C -0.104 4.104 25 H 0.121 0.879 26 C 0.321 3.679 27 O -0.370 6.370 28 O -0.339 6.339 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.168 0.832 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.772 20.452 -5.729 22.292 hybrid contribution 1.035 -0.707 -1.789 2.184 sum -5.737 19.744 -7.517 21.892 Atomic orbital electron populations 1.81223 1.12994 1.09155 1.08530 1.29053 0.95051 0.92952 0.93215 1.19900 0.81501 1.05802 1.02007 1.21327 0.81870 1.04744 0.92991 1.47874 1.04854 1.09230 1.70647 1.19709 0.92453 0.80339 0.97915 1.21308 1.37212 1.05549 0.92874 0.90623 1.24855 0.95218 0.96794 0.96074 1.69893 1.41231 1.17642 1.24582 0.86874 0.80151 0.78691 0.84059 1.19927 1.21127 1.19037 1.20222 0.88238 0.84559 0.77594 1.90713 1.13614 1.85711 1.48943 1.21971 0.94674 0.90683 1.01936 1.60365 1.18531 1.02337 1.48791 1.22179 0.93741 0.87145 0.98326 0.92376 1.22514 1.01148 0.96990 0.95011 1.22440 0.96476 0.96087 1.00802 1.22431 1.00080 0.99171 0.93443 1.21844 0.89600 0.98387 1.00534 0.87855 1.23023 0.89558 0.75343 0.80011 1.90753 1.54080 1.42388 1.49804 1.84515 1.40517 1.79183 1.29715 0.87677 0.86644 0.88437 0.90356 0.95030 0.94352 0.92524 0.87987 0.92687 0.83220 0.89346 0.91261 0.90693 0.91297 0.89230 0.90924 0.72926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.11 18.54 42.15 0.78 -5.33 16 2 C 0.22 2.38 15.43 -20.76 -0.32 2.06 16 3 C -0.05 -0.47 6.03 -29.52 -0.18 -0.64 16 4 C 0.12 1.45 5.17 -4.04 -0.02 1.43 16 5 N -0.59 -10.35 2.46 -175.06 -0.43 -10.78 16 6 C 0.22 4.75 4.23 -5.19 -0.02 4.73 16 7 C -0.53 -14.49 9.94 -34.44 -0.34 -14.83 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 10 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 11 Si 0.88 20.74 27.47 -169.99 -4.67 16.07 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.27 -5.76 6.54 56.52 0.37 -5.39 16 15 C 0.51 9.11 7.71 -10.99 -0.08 9.03 16 16 O -0.52 -11.86 15.78 5.56 0.09 -11.77 16 17 C 0.04 0.50 4.55 -4.97 -0.02 0.48 16 18 N -0.66 -8.83 5.22 -106.80 -0.56 -9.38 16 19 C 0.10 0.93 3.21 -66.60 -0.21 0.71 16 20 H 0.06 0.45 7.96 -51.93 -0.41 0.04 16 21 C -0.12 -1.09 6.04 -25.07 -0.15 -1.24 16 22 C -0.12 -0.88 6.91 -24.74 -0.17 -1.05 16 23 C -0.11 -0.95 6.32 -25.08 -0.16 -1.11 16 24 C -0.08 -0.76 3.39 -90.65 -0.31 -1.06 16 25 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 26 C 0.48 5.66 5.05 36.01 0.18 5.85 16 27 O -0.49 -7.68 16.53 -18.75 -0.31 -7.99 16 28 O -0.53 -5.03 13.14 -39.26 -0.52 -5.55 16 29 H 0.11 0.74 7.22 -51.93 -0.38 0.37 16 30 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 32 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 33 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 34 H 0.04 0.91 6.85 -51.93 -0.36 0.56 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.10 1.19 7.06 -51.93 -0.37 0.82 16 37 H 0.06 0.51 7.14 -51.93 -0.37 0.14 16 38 H 0.35 4.88 6.21 -39.29 -0.24 4.63 16 39 H 0.09 1.05 8.05 -51.93 -0.42 0.64 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.96 6.96 -51.93 -0.36 0.60 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.41 2.71 9.10 45.56 0.41 3.13 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -37.44 376.71 -6.81 -44.26 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -5.74 Total: 4.81 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -1.91 Total: 6.32 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: 0.57 Total: -51.82 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -0.74 Total: -25.31 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -37.44 -6.81 -44.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.493 kcal (2) G-P(sol) polarization free energy of solvation -37.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds