Wall clock time and date at job start Tue Mar 31 2020 14:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47447 * 280.22033 * 3 2 1 5 5 N 1.46499 * 109.47358 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99924 * 270.00195 * 5 4 3 7 7 C 1.50705 * 109.47216 * 269.99699 * 6 5 4 8 8 H 1.08000 * 119.99622 * 0.02562 * 7 6 5 9 9 C 1.37869 * 119.99822 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99710 * 180.02562 * 9 7 6 11 11 Si 1.86793 * 120.00548 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.47282 * 89.99670 * 11 9 7 13 13 H 1.48501 * 109.47577 * 210.00145 * 11 9 7 14 14 H 1.48501 * 109.46718 * 329.99845 * 11 9 7 15 15 C 1.34774 * 119.99886 * 89.99921 * 5 4 3 16 16 O 1.21277 * 119.99864 * 179.97438 * 15 5 4 17 17 C 1.50701 * 120.00086 * 0.02562 * 15 5 4 18 18 N 1.46903 * 109.47187 * 179.97438 * 17 15 5 19 19 C 1.46896 * 110.99870 * 179.97438 * 18 17 15 20 20 H 1.09007 * 110.05747 * 317.39798 * 19 18 17 21 21 C 1.54268 * 110.03245 * 78.81509 * 19 18 17 22 22 C 1.54888 * 104.19524 * 142.89177 * 21 19 18 23 23 C 1.54886 * 102.75040 * 322.06021 * 22 21 19 24 24 C 1.53877 * 110.03201 * 195.98011 * 19 18 17 25 25 H 1.09003 * 110.07448 * 121.40899 * 24 19 18 26 26 C 1.50706 * 110.03149 * 0.02562 * 24 19 18 27 27 O 1.20823 * 119.99707 * 277.58711 * 26 24 19 28 28 O 1.34231 * 119.99681 * 97.31261 * 26 24 19 29 29 H 1.09004 * 109.47189 * 160.21690 * 3 2 1 30 30 H 1.09003 * 109.46674 * 40.22249 * 3 2 1 31 31 H 1.09004 * 109.46682 * 59.99681 * 4 3 2 32 32 H 1.09003 * 109.46934 * 300.00443 * 4 3 2 33 33 H 1.08996 * 109.47364 * 29.99958 * 6 5 4 34 34 H 1.09003 * 109.46846 * 149.99722 * 6 5 4 35 35 H 0.96999 * 120.00407 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.46990 * 59.99823 * 17 15 5 37 37 H 1.09001 * 109.46763 * 299.99710 * 17 15 5 38 38 H 1.00900 * 110.99925 * 56.04462 * 18 17 15 39 39 H 1.08999 * 110.48578 * 24.21526 * 21 19 18 40 40 H 1.09001 * 110.48379 * 261.56920 * 21 19 18 41 41 H 1.09003 * 110.75780 * 203.74056 * 22 21 19 42 42 H 1.09006 * 110.91479 * 80.44773 * 22 21 19 43 43 H 1.09005 * 110.48328 * 279.26054 * 23 22 21 44 44 H 1.08997 * 110.49125 * 156.62263 * 23 22 21 45 45 H 0.96698 * 116.99136 * 180.27609 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.2551 1.4196 5 7 4.5832 -0.2550 1.4194 6 6 5.3157 -1.5036 1.1944 7 6 5.5671 -2.1837 2.5156 8 1 5.2159 -1.7312 3.4312 9 6 6.2454 -3.3834 2.5553 10 7 6.4643 -3.9771 3.7082 11 14 6.8534 -4.1655 0.9717 12 1 8.2266 -3.6833 0.6768 13 1 6.8693 -5.6427 1.1234 14 1 5.9474 -3.7924 -0.1442 15 6 5.2570 0.8937 1.6263 16 8 6.4698 0.8937 1.6266 17 6 4.5035 2.1780 1.8583 18 7 5.4581 3.2769 2.0566 19 6 4.7577 4.5477 2.2856 20 1 3.9171 4.6405 1.5978 21 6 4.2583 4.6207 3.7433 22 6 4.4502 6.1065 4.1366 23 6 5.7846 6.4744 3.4418 24 6 5.7282 5.7263 2.0939 25 1 5.3595 6.3914 1.3129 26 6 7.0977 5.2134 1.7298 27 8 7.8508 4.8348 2.5954 28 8 7.4787 5.1721 0.4434 29 1 2.9710 0.9679 -0.3478 30 1 2.9716 -0.7839 -0.6637 31 1 2.7552 -1.2223 1.7673 32 1 2.7545 0.5295 2.0832 33 1 4.7266 -2.1601 0.5541 34 1 6.2681 -1.2842 0.7117 35 1 6.9418 -4.8209 3.7363 36 1 3.8773 2.0768 2.7446 37 1 3.8765 2.3927 0.9929 38 1 6.0929 3.3498 1.2757 39 1 4.8586 3.9757 4.3850 40 1 3.2056 4.3439 3.8002 41 1 4.5358 6.2118 5.2182 42 1 3.6337 6.7189 3.7539 43 1 6.6314 6.1288 4.0348 44 1 5.8459 7.5504 3.2787 45 1 8.3647 4.8315 0.2588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:27 Heat of formation + Delta-G solvation = -124.526379 kcal Electronic energy + Delta-G solvation = -27889.988547 eV Core-core repulsion = 23906.361084 eV Total energy + Delta-G solvation = -3983.627463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70516 -40.75994 -38.89940 -37.97731 -36.97671 -36.70881 -35.29561 -34.71331 -32.32877 -30.78392 -30.29056 -28.80330 -26.40238 -25.21612 -24.13956 -23.76976 -21.55571 -20.53998 -19.91554 -19.17699 -18.99679 -18.50947 -18.11806 -17.64217 -17.41347 -16.78200 -16.61045 -16.13205 -15.84942 -15.71930 -15.54963 -15.33196 -14.83966 -14.76121 -14.44989 -14.09231 -14.03350 -13.77952 -13.55437 -13.42768 -13.29469 -13.01791 -12.87670 -12.66654 -12.51287 -12.40002 -12.34221 -12.07481 -12.03390 -11.96946 -11.87954 -11.81849 -11.68872 -11.50108 -11.38786 -10.77570 -10.59415 -9.49335 -9.34437 -8.27944 -6.32705 1.29903 1.37239 1.42255 1.49296 1.70225 1.84881 1.87204 2.16685 2.25752 2.36237 3.01873 3.09121 3.25062 3.49435 3.57225 3.77934 4.04140 4.11202 4.13253 4.30164 4.35882 4.44454 4.47995 4.48994 4.55030 4.59945 4.66391 4.80742 4.82724 4.87759 4.99819 5.05227 5.11173 5.12711 5.23554 5.25731 5.52491 5.53206 5.63577 5.72377 5.95598 6.24063 6.29928 6.63295 6.70530 6.72737 7.07288 7.28073 7.48590 8.89328 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010539 B = 0.003811 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.209620 B = 7346.017789 C = 8812.070340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.245 3.755 3 C -0.036 4.036 4 C 0.111 3.889 5 N -0.595 5.595 6 C 0.223 3.777 7 C -0.534 4.534 8 H 0.026 0.974 9 C 0.006 3.994 10 N -0.951 5.951 11 Si 0.946 3.054 12 H -0.280 1.280 13 H -0.283 1.283 14 H -0.224 1.224 15 C 0.499 3.501 16 O -0.578 6.578 17 C 0.051 3.949 18 N -0.695 5.695 19 C 0.096 3.904 20 H 0.094 0.906 21 C -0.122 4.122 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.083 4.083 25 H 0.138 0.862 26 C 0.481 3.519 27 O -0.539 6.539 28 O -0.519 6.519 29 H 0.140 0.860 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.023 0.977 35 H 0.265 0.735 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.339 0.661 39 H 0.049 0.951 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.096 0.904 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 22.680 -9.868 26.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.077 4.077 4 C -0.014 4.014 5 N -0.326 5.326 6 C 0.101 3.899 7 C -0.572 4.572 8 H 0.045 0.955 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.769 3.231 12 H -0.206 1.206 13 H -0.209 1.209 14 H -0.147 1.147 15 C 0.288 3.712 16 O -0.457 6.457 17 C -0.080 4.080 18 N -0.331 5.331 19 C -0.013 4.013 20 H 0.112 0.888 21 C -0.160 4.160 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.102 4.102 25 H 0.156 0.844 26 C 0.324 3.676 27 O -0.428 6.428 28 O -0.333 6.333 29 H 0.158 0.842 30 H 0.145 0.855 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.122 0.878 38 H 0.160 0.840 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.117 0.883 43 H 0.073 0.927 44 H 0.115 0.885 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -9.187 22.437 -8.829 25.803 hybrid contribution 1.792 -1.271 -0.726 2.314 sum -7.395 21.166 -9.555 24.372 Atomic orbital electron populations 1.81274 1.14550 1.11016 1.09988 1.29165 0.94972 0.91340 0.91748 1.19845 0.79965 1.08201 0.99678 1.21549 0.78715 1.05163 0.95949 1.47838 1.06813 1.07721 1.70225 1.19381 0.93101 0.82413 0.94989 1.21646 1.36305 1.05566 0.93714 0.95547 1.25894 0.95511 0.97656 1.00027 1.70074 1.43010 1.18462 1.27607 0.85743 0.79671 0.77370 0.80313 1.20640 1.20867 1.14672 1.21258 0.87875 0.86175 0.75882 1.90683 1.16560 1.86806 1.51619 1.21959 0.94134 0.87550 1.04347 1.60318 1.19642 1.04116 1.49007 1.22369 0.94460 0.85469 0.99033 0.88787 1.22530 1.01468 0.97644 0.94350 1.22441 0.96659 0.95084 1.00774 1.22438 0.99436 1.00453 0.92932 1.22052 0.87743 0.98741 1.01697 0.84373 1.23686 0.90186 0.73946 0.79813 1.90739 1.55877 1.44921 1.51255 1.84493 1.41393 1.78729 1.28653 0.84243 0.85452 0.89906 0.87858 0.92027 0.95940 0.92565 0.86870 0.87807 0.84036 0.93254 0.89317 0.90937 0.88349 0.92722 0.88536 0.71735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.31 18.54 20.01 0.37 -11.93 16 2 C 0.25 4.52 15.43 89.44 1.38 5.90 16 3 C -0.04 -0.50 6.03 28.79 0.17 -0.32 16 4 C 0.11 2.43 5.17 86.38 0.45 2.88 16 5 N -0.59 -19.87 2.46 -826.15 -2.03 -21.90 16 6 C 0.22 9.64 4.23 85.63 0.36 10.00 16 7 C -0.53 -29.99 9.94 25.60 0.25 -29.74 16 8 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 9 C 0.01 0.37 5.47 84.65 0.46 0.83 16 10 N -0.95 -60.00 13.96 21.44 0.30 -59.70 16 11 Si 0.95 42.77 27.47 68.60 1.88 44.65 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.22 -8.56 6.54 99.48 0.65 -7.91 16 15 C 0.50 17.49 7.71 87.66 0.68 18.17 16 16 O -0.58 -27.26 15.78 -3.02 -0.05 -27.31 16 17 C 0.05 1.16 4.55 85.56 0.39 1.55 16 18 N -0.70 -17.47 5.22 -491.82 -2.57 -20.04 16 19 C 0.10 1.55 3.21 45.64 0.15 1.70 16 20 H 0.09 0.91 7.96 -2.38 -0.02 0.89 16 21 C -0.12 -2.00 6.04 31.67 0.19 -1.81 16 22 C -0.11 -1.36 6.91 31.88 0.22 -1.14 16 23 C -0.11 -1.74 6.32 31.67 0.20 -1.54 16 24 C -0.08 -1.29 3.39 -10.81 -0.04 -1.33 16 25 H 0.14 1.21 8.14 -2.39 -0.02 1.19 16 26 C 0.48 11.12 5.05 71.24 0.36 11.48 16 27 O -0.54 -17.91 16.53 21.97 0.36 -17.55 16 28 O -0.52 -9.36 13.14 -51.43 -0.68 -10.03 16 29 H 0.14 1.09 7.22 -2.38 -0.02 1.07 16 30 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 2.10 8.07 -2.38 -0.02 2.08 16 32 H 0.10 1.77 6.44 -2.39 -0.02 1.75 16 33 H 0.06 2.31 7.13 -2.39 -0.02 2.29 16 34 H 0.02 1.06 6.85 -2.39 -0.02 1.04 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.11 2.31 7.06 -2.39 -0.02 2.29 16 37 H 0.10 1.32 7.14 -2.39 -0.02 1.31 16 38 H 0.34 9.22 6.21 -89.69 -0.56 8.66 16 39 H 0.05 1.20 8.05 -2.39 -0.02 1.18 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 43 H 0.05 1.22 6.96 -2.38 -0.02 1.21 16 44 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.42 5.48 9.10 -74.06 -0.67 4.81 16 Total: -1.00 -90.28 376.71 2.57 -87.71 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: -0.25 Total: 19.47 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 5.23 Total: 16.63 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -3.93 Total: -113.57 kcal Atomic # 8 Polarization: -54.53 SS G_CDS: -0.36 Total: -54.89 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.88 Total: 44.65 kcal Total: -90.28 2.57 -87.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.814 kcal (2) G-P(sol) polarization free energy of solvation -90.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds