Wall clock time and date at job start Tue Mar 31 2020 14:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46736 * 179.97438 * 8 7 6 10 10 C 1.53005 * 109.47090 * 179.97438 * 9 8 7 11 11 C 1.52996 * 109.47464 * 180.02562 * 10 9 8 12 12 C 1.50693 * 109.47502 * 180.02562 * 11 10 9 13 13 O 1.20834 * 119.99878 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00421 * 179.97438 * 12 11 10 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99784 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99944 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47036 * 89.99828 * 23 21 19 25 25 H 1.48501 * 109.47338 * 209.99683 * 23 21 19 26 26 H 1.48499 * 109.47125 * 329.99973 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 35 35 H 1.08994 * 109.47627 * 299.99497 * 9 8 7 36 36 H 1.09001 * 109.47155 * 60.00044 * 9 8 7 37 37 H 1.08999 * 109.47241 * 300.00555 * 10 9 8 38 38 H 1.09001 * 109.46760 * 60.00201 * 10 9 8 39 39 H 1.09004 * 109.46699 * 300.00202 * 11 10 9 40 40 H 1.08998 * 109.47030 * 59.99567 * 11 10 9 41 41 H 0.96695 * 117.00023 * 180.02562 * 14 12 11 42 42 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 43 43 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 44 44 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 45 45 H 0.97003 * 119.99565 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 3.1353 7.2859 0.0121 10 6 4.3610 8.2017 0.0203 11 6 3.9063 9.6626 0.0203 12 6 5.1135 10.5645 0.0278 13 8 6.2238 10.0878 0.0321 14 8 4.9554 11.8975 0.0286 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.1411 -4.6597 -2.9134 23 14 0.9035 -5.3981 -0.2537 24 1 -0.5276 -5.2730 0.1227 25 1 1.1865 -6.7965 -0.6655 26 1 1.7543 -5.0430 0.9105 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.1842 5.6296 0.9054 34 1 4.1932 5.6324 -0.8745 35 1 2.5415 7.4813 -0.8808 36 1 2.5321 7.4790 0.8991 37 1 4.9546 8.0063 0.9133 38 1 4.9646 8.0088 -0.8666 39 1 3.3125 9.8582 -0.8726 40 1 3.3028 9.8552 0.9073 41 1 5.7593 12.4348 0.0330 42 1 4.5448 1.2675 -0.0108 43 1 2.5848 -3.0960 0.5130 44 1 0.8915 -2.5472 0.5136 45 1 0.8471 -5.5669 -3.0907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574296179.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:05 Heat of formation + Delta-G solvation = -111.641807 kcal Electronic energy + Delta-G solvation = -25623.791217 eV Core-core repulsion = 21640.722472 eV Total energy + Delta-G solvation = -3983.068746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.32823 -41.19251 -40.11685 -37.47826 -36.95164 -35.78837 -35.28697 -33.98550 -32.87257 -32.16536 -29.78223 -28.51664 -27.49435 -25.08253 -24.20845 -23.10488 -22.26575 -21.53780 -21.09517 -20.43619 -19.28802 -18.99321 -18.43038 -17.38216 -17.34164 -16.87679 -16.72524 -16.62365 -16.39092 -15.95741 -15.51719 -15.29266 -14.81598 -14.52765 -14.42347 -14.35577 -14.13954 -13.84778 -13.75693 -13.69962 -13.19360 -13.11643 -12.99501 -12.88656 -12.56007 -12.51574 -12.20117 -12.15319 -11.99075 -11.91581 -11.85409 -11.72475 -11.56201 -11.37249 -10.91960 -10.78300 -10.26590 -10.04900 -9.41878 -8.43353 -6.55578 0.66488 1.26182 1.32360 1.34092 1.35465 1.45578 1.63357 2.20645 2.24644 2.45043 2.56345 2.89167 3.71622 3.73786 3.84434 3.95525 4.04083 4.12613 4.20596 4.28620 4.35397 4.40106 4.52614 4.56959 4.69297 4.70041 4.72271 4.73621 4.84828 4.94028 5.02573 5.05613 5.07390 5.13757 5.17589 5.26496 5.44799 5.50969 5.58910 5.66490 5.68355 5.83495 6.20814 6.47272 6.66171 6.81340 7.02715 7.08459 7.39904 8.73154 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038150 B = 0.001641 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.760751 B =17058.099741 C =17329.279155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.146 3.854 3 C -0.331 4.331 4 C 0.602 3.398 5 O -0.585 6.585 6 N -0.717 5.717 7 C 0.122 3.878 8 C -0.124 4.124 9 C -0.111 4.111 10 C -0.106 4.106 11 C -0.113 4.113 12 C 0.478 3.522 13 O -0.560 6.560 14 O -0.518 6.518 15 C 0.080 3.920 16 N -0.334 5.334 17 N -0.339 5.339 18 C 0.234 3.766 19 C -0.555 4.555 20 H 0.025 0.975 21 C 0.024 3.976 22 N -0.935 5.935 23 Si 0.950 3.050 24 H -0.252 1.252 25 H -0.277 1.277 26 H -0.243 1.243 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.412 0.588 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.125 0.875 40 H 0.127 0.873 41 H 0.425 0.575 42 H 0.227 0.773 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.224 29.102 10.010 31.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.010 3.990 3 C -0.346 4.346 4 C 0.391 3.609 5 O -0.467 6.467 6 N -0.369 5.369 7 C -0.001 4.001 8 C -0.162 4.162 9 C -0.149 4.149 10 C -0.144 4.144 11 C -0.150 4.150 12 C 0.323 3.677 13 O -0.451 6.451 14 O -0.332 6.332 15 C -0.107 4.107 16 N -0.154 5.154 17 N -0.116 5.116 18 C 0.114 3.886 19 C -0.593 4.593 20 H 0.044 0.956 21 C -0.176 4.176 22 N -0.573 5.573 23 Si 0.770 3.230 24 H -0.176 1.176 25 H -0.202 1.202 26 H -0.166 1.166 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.248 0.752 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.143 0.857 40 H 0.145 0.855 41 H 0.286 0.714 42 H 0.244 0.756 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.981 27.570 9.895 29.561 hybrid contribution 0.590 0.043 -0.284 0.656 sum 4.570 27.613 9.611 29.592 Atomic orbital electron populations 1.20590 0.85717 1.04558 1.03791 1.21998 0.96017 0.86732 0.94212 1.20025 0.93335 0.93298 1.27990 1.17141 0.85164 0.83923 0.74691 1.90675 1.18032 1.84780 1.53225 1.45625 1.09895 1.05806 1.75584 1.21411 0.97834 0.79085 1.01768 1.21737 0.96361 0.94390 1.03675 1.21445 0.97237 0.92378 1.03805 1.21373 0.98044 0.91911 1.03054 1.21515 0.93508 0.92076 1.07908 1.24123 0.91595 0.81882 0.70116 1.90736 1.29552 1.77014 1.47804 1.84520 1.44379 1.19272 1.84994 1.24525 0.97719 0.91597 0.96820 1.77087 0.98007 1.14507 1.25749 1.48766 1.03518 1.07297 1.52000 1.19889 0.96798 0.74571 0.97357 1.21195 1.48258 0.98876 0.90963 0.95647 1.25820 0.93569 0.99196 0.99059 1.70028 1.46570 1.19091 1.21597 0.85693 0.80464 0.77791 0.79002 1.17591 1.20230 1.16597 0.90511 0.90120 0.87781 0.75170 0.92453 0.91952 0.90355 0.90736 0.90553 0.90274 0.91795 0.92006 0.85661 0.85501 0.71405 0.75637 0.92563 0.91135 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.14 9.57 71.24 0.68 -2.46 16 2 C 0.15 5.84 7.01 42.14 0.30 6.13 16 3 C -0.33 -11.57 6.13 -20.15 -0.12 -11.69 16 4 C 0.60 18.76 7.81 86.67 0.68 19.43 16 5 O -0.59 -21.55 14.84 -4.04 -0.06 -21.61 16 6 N -0.72 -15.15 5.55 -466.36 -2.59 -17.74 16 7 C 0.12 2.05 5.67 86.38 0.49 2.54 16 8 C -0.12 -1.25 5.33 30.59 0.16 -1.09 16 9 C -0.11 -0.80 5.21 30.59 0.16 -0.64 16 10 C -0.11 -0.91 4.50 30.59 0.14 -0.77 16 11 C -0.11 -0.67 5.81 29.84 0.17 -0.49 16 12 C 0.48 5.53 8.33 71.23 0.59 6.12 16 13 O -0.56 -11.02 16.74 21.94 0.37 -10.65 16 14 O -0.52 -3.91 13.42 -51.40 -0.69 -4.60 16 15 C 0.08 2.60 11.50 85.65 0.99 3.58 16 16 N -0.33 -13.96 12.50 -56.28 -0.70 -14.66 16 17 N -0.34 -15.04 3.56 -336.70 -1.20 -16.24 16 18 C 0.23 10.88 5.03 85.63 0.43 11.31 16 19 C -0.55 -31.49 9.94 25.60 0.25 -31.23 16 20 H 0.03 1.67 8.06 -2.91 -0.02 1.65 16 21 C 0.02 1.32 5.47 84.65 0.46 1.79 16 22 N -0.93 -56.49 13.96 21.45 0.30 -56.19 16 23 Si 0.95 40.31 27.47 68.60 1.88 42.19 16 24 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 25 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 26 H -0.24 -9.43 6.54 99.48 0.65 -8.78 16 27 H 0.08 2.84 8.14 -2.39 -0.02 2.83 16 28 H 0.08 2.62 7.05 -2.39 -0.02 2.61 16 29 H 0.10 3.47 6.50 -2.39 -0.02 3.45 16 30 H 0.41 6.37 7.43 -92.71 -0.69 5.68 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 38 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 39 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.13 0.29 8.14 -2.39 -0.02 0.27 16 41 H 0.42 0.21 9.10 -74.06 -0.67 -0.47 16 42 H 0.23 4.59 7.50 -2.91 -0.02 4.56 16 43 H 0.06 2.58 7.20 -2.38 -0.02 2.56 16 44 H 0.07 2.93 6.44 -2.39 -0.02 2.92 16 45 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -81.57 383.19 2.30 -79.27 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -0.39 Total: 17.72 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 5.38 Total: 2.53 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -4.19 Total: -104.84 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.38 Total: -36.87 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.88 Total: 42.19 kcal Total: -81.57 2.30 -79.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574296179.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.370 kcal (2) G-P(sol) polarization free energy of solvation -81.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds