Wall clock time and date at job start Tue Mar 31 2020 14:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47137 * 64.77613 * 3 2 1 5 5 N 1.46500 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99992 * 269.99531 * 5 4 3 7 7 C 1.50696 * 109.47305 * 270.00568 * 6 5 4 8 8 H 1.08005 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00346 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99567 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00111 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47065 * 60.00499 * 11 9 7 13 13 H 1.48503 * 109.47157 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47464 * 300.00144 * 11 9 7 15 15 C 1.34773 * 120.00485 * 89.99989 * 5 4 3 16 16 O 1.21284 * 120.00226 * 179.97438 * 15 5 4 17 17 C 1.50704 * 119.99747 * 359.97438 * 15 5 4 18 18 N 1.46902 * 109.47009 * 180.02562 * 17 15 5 19 19 C 1.46901 * 110.99959 * 170.00410 * 18 17 15 20 20 C 1.50701 * 109.47298 * 195.66808 * 19 18 17 21 21 O 1.20822 * 119.99560 * 5.27659 * 20 19 18 22 22 O 1.34222 * 119.99800 * 185.28757 * 20 19 18 23 23 C 1.46894 * 111.00129 * 293.95703 * 18 17 15 24 24 C 1.53779 * 113.61556 * 14.01521 * 23 18 17 25 25 C 1.53955 * 87.02139 * 220.04355 * 24 23 18 26 26 C 1.53777 * 113.61575 * 276.40447 * 23 18 17 27 27 H 1.08994 * 109.47377 * 304.76817 * 3 2 1 28 28 H 1.09008 * 109.46962 * 184.77143 * 3 2 1 29 29 H 1.08990 * 109.47519 * 59.99845 * 4 3 2 30 30 H 1.09002 * 109.46732 * 299.99213 * 4 3 2 31 31 H 1.09011 * 109.46845 * 30.00170 * 6 5 4 32 32 H 1.08998 * 109.47410 * 150.00140 * 6 5 4 33 33 H 0.97000 * 119.99689 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47490 * 300.00620 * 17 15 5 35 35 H 1.09006 * 109.47041 * 60.00517 * 17 15 5 36 36 H 1.09002 * 109.46799 * 315.66764 * 19 18 17 37 37 H 1.08997 * 109.47234 * 75.66156 * 19 18 17 38 38 H 0.96707 * 116.99951 * 179.97438 * 22 20 19 39 39 H 1.09004 * 112.84623 * 145.20824 * 23 18 17 40 40 H 1.09001 * 113.61664 * 334.56704 * 24 23 18 41 41 H 1.09005 * 113.61487 * 105.47101 * 24 23 18 42 42 H 1.08999 * 113.54150 * 270.81473 * 25 24 23 43 43 H 1.08995 * 113.66449 * 139.92689 * 25 24 23 44 44 H 1.08999 * 113.61922 * 254.52754 * 26 23 18 45 45 H 1.08997 * 113.61692 * 25.35507 * 26 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.6138 -1.3050 5 7 4.5833 -0.6126 -1.3052 6 6 5.3147 0.5357 -1.8462 7 6 5.5658 0.3237 -3.3169 8 1 5.2158 -0.5765 -3.8002 9 6 6.2422 1.2790 -4.0456 10 7 6.6687 2.3750 -3.4569 11 14 6.5539 1.0159 -5.8685 12 1 5.2566 0.8761 -6.5774 13 1 7.2953 2.1799 -6.4169 14 1 7.3583 -0.2176 -6.0602 15 6 5.2582 -1.6678 -0.8077 16 8 6.4710 -1.6669 -0.8083 17 6 4.5058 -2.8488 -0.2507 18 7 5.4614 -3.8578 0.2256 19 6 4.7780 -4.9124 0.9862 20 6 5.7923 -5.7021 1.7728 21 8 6.9504 -5.3579 1.7823 22 8 5.4091 -6.7879 2.4626 23 6 6.2271 -4.4264 -0.8916 24 6 6.1060 -3.6198 -2.1952 25 6 6.0374 -4.9707 -2.9304 26 6 5.4984 -5.5681 -1.6198 27 1 2.9716 -0.5852 0.8441 28 1 2.9708 1.0250 0.0855 29 1 2.7547 -0.0280 -2.1490 30 1 2.7555 -1.6382 -1.3904 31 1 4.7248 1.4415 -1.7052 32 1 6.2671 0.6377 -1.3260 33 1 7.1449 3.0469 -3.9695 34 1 3.8792 -2.5220 0.5791 35 1 3.8791 -3.2811 -1.0308 36 1 4.0600 -4.4599 1.6702 37 1 4.2552 -5.5763 0.2977 38 1 6.0954 -7.2622 2.9516 39 1 7.2552 -4.6671 -0.6210 40 1 5.1871 -3.0376 -2.2648 41 1 6.9963 -3.0372 -2.4326 42 1 7.0140 -5.3597 -3.2184 43 1 5.3160 -4.9881 -3.7473 44 1 5.8988 -6.5563 -1.3934 45 1 4.4132 -5.5206 -1.5306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574480996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:51 Heat of formation + Delta-G solvation = -40.993776 kcal Electronic energy + Delta-G solvation = -28673.518494 eV Core-core repulsion = 24693.513277 eV Total energy + Delta-G solvation = -3980.005217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97014 -39.88903 -38.32890 -36.82563 -36.17547 -35.19495 -34.66290 -32.88408 -30.84724 -29.81373 -27.57351 -26.23248 -25.26779 -24.03923 -23.78492 -22.37131 -21.30823 -19.22317 -18.55720 -18.08383 -17.57000 -16.96384 -16.71209 -16.43279 -16.21793 -15.79966 -15.46260 -15.14484 -14.78552 -14.46762 -14.36285 -13.92686 -13.64983 -13.51976 -13.14614 -13.01927 -12.58491 -12.45042 -12.29100 -12.12744 -12.01450 -11.84227 -11.60599 -11.57537 -11.45134 -11.26562 -11.03200 -10.88813 -10.84080 -10.61261 -10.56222 -10.45665 -10.17555 -10.06127 -9.66496 -8.93769 -8.46679 -8.20497 -7.80323 -6.08415 -4.13002 2.17362 2.66805 2.72595 2.78666 3.29102 3.30704 3.34900 3.37883 3.55448 3.90294 4.23573 4.41504 4.60028 4.67218 4.87232 4.91190 4.93899 4.98625 5.04662 5.10816 5.14515 5.22923 5.26918 5.27327 5.30940 5.50029 5.63775 5.80198 5.80744 5.96806 5.98530 6.04301 6.15842 6.38976 6.53247 6.71611 6.75338 6.93882 7.01632 7.38277 7.44714 7.54997 7.86059 7.87533 8.17633 8.26945 8.85587 9.02651 9.52553 10.99599 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004539 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.509421 B = 6167.138386 C = 7924.647637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C -0.051 4.051 4 C 0.117 3.883 5 N -0.601 5.601 6 C 0.248 3.752 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.894 3.106 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.511 3.489 16 O -0.503 6.503 17 C 0.032 3.968 18 N -0.500 5.500 19 C 0.061 3.939 20 C 0.475 3.525 21 O -0.487 6.487 22 O -0.525 6.525 23 C 0.079 3.921 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.178 4.178 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.115 0.885 37 H 0.082 0.918 38 H 0.409 0.591 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.511 -15.125 8.401 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.009 4.009 5 N -0.335 5.335 6 C 0.129 3.871 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.138 4.138 10 N -0.532 5.532 11 Si 0.722 3.278 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.296 3.704 16 O -0.377 6.377 17 C -0.099 4.099 18 N -0.224 5.224 19 C -0.068 4.068 20 C 0.315 3.685 21 O -0.371 6.371 22 O -0.338 6.338 23 C -0.028 4.028 24 C -0.169 4.169 25 C -0.184 4.184 26 C -0.217 4.217 27 H 0.124 0.876 28 H 0.136 0.864 29 H 0.113 0.887 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.115 0.885 35 H 0.081 0.919 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.267 0.733 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.109 0.891 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.044 -14.369 8.472 18.107 hybrid contribution 0.438 -0.751 -1.225 1.502 sum -6.606 -15.121 7.247 18.022 Atomic orbital electron populations 1.81211 1.13076 1.09271 1.08796 1.29136 0.95128 0.92853 0.93009 1.19930 0.81249 1.06212 1.01902 1.21292 0.82523 1.01266 0.95844 1.48217 1.04577 1.20162 1.60496 1.19318 0.92626 0.81385 0.93776 1.21349 1.36802 1.04609 0.93816 0.92481 1.24893 0.95356 0.95073 0.98519 1.69908 1.38220 1.08676 1.36370 0.86624 0.78351 0.77744 0.85088 1.20328 1.21264 1.20182 1.19818 0.88383 0.83244 0.78927 1.90740 1.13340 1.78981 1.54639 1.22201 0.94208 0.93045 1.00436 1.61301 1.24286 1.11714 1.25135 1.21543 0.93637 0.93941 0.97643 1.23301 0.89330 0.78495 0.77392 1.90761 1.20259 1.66892 1.59236 1.84499 1.46745 1.40855 1.61662 1.23354 0.98296 0.93460 0.87721 1.23606 1.04071 0.95633 0.93594 1.22829 1.01216 0.98219 0.96099 1.23581 1.00158 0.99154 0.98810 0.87568 0.86393 0.88742 0.90981 0.94857 0.93507 0.92644 0.88470 0.91883 0.86711 0.90037 0.73250 0.87059 0.89651 0.89063 0.90250 0.91517 0.91732 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.26 18.54 42.15 0.78 -5.47 16 2 C 0.22 2.45 15.43 -20.76 -0.32 2.13 16 3 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 4 C 0.12 1.43 5.17 -4.04 -0.02 1.41 16 5 N -0.60 -10.25 2.46 -175.06 -0.43 -10.68 16 6 C 0.25 5.63 5.16 -5.19 -0.03 5.60 16 7 C -0.53 -13.49 9.39 -34.44 -0.32 -13.82 16 8 H 0.06 1.45 7.81 -52.48 -0.41 1.04 16 9 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -25.10 13.29 55.43 0.74 -24.37 16 11 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.51 8.79 5.20 -10.99 -0.06 8.73 16 16 O -0.50 -11.09 12.94 5.55 0.07 -11.02 16 17 C 0.03 0.39 3.53 -4.97 -0.02 0.37 16 18 N -0.50 -6.64 4.07 -228.54 -0.93 -7.57 16 19 C 0.06 0.59 5.28 -4.97 -0.03 0.56 16 20 C 0.47 5.24 8.08 36.01 0.29 5.53 16 21 O -0.49 -7.39 16.21 -18.75 -0.30 -7.69 16 22 O -0.53 -4.14 13.42 -39.24 -0.53 -4.66 16 23 C 0.08 1.13 3.13 -66.91 -0.21 0.92 16 24 C -0.13 -2.10 4.92 -25.83 -0.13 -2.23 16 25 C -0.15 -1.87 8.09 -25.82 -0.21 -2.07 16 26 C -0.18 -2.00 6.25 -25.92 -0.16 -2.16 16 27 H 0.11 0.80 7.22 -51.93 -0.37 0.43 16 28 H 0.12 1.15 8.14 -51.92 -0.42 0.73 16 29 H 0.09 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 31 H 0.03 0.76 8.07 -51.92 -0.42 0.34 16 32 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.10 0.88 6.91 -51.93 -0.36 0.52 16 35 H 0.06 0.67 6.13 -51.93 -0.32 0.35 16 36 H 0.11 0.82 7.81 -51.93 -0.41 0.41 16 37 H 0.08 0.65 5.78 -51.93 -0.30 0.35 16 38 H 0.41 1.66 9.10 45.56 0.41 2.07 16 39 H 0.11 1.84 7.62 -51.93 -0.40 1.45 16 40 H 0.09 1.40 4.39 -51.93 -0.23 1.17 16 41 H 0.09 1.80 7.25 -51.93 -0.38 1.42 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.08 0.76 6.79 -51.93 -0.35 0.41 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -34.68 370.59 -7.01 -41.69 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.49 Total: 2.44 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.48 Total: 5.92 kcal Atomic # 7 Polarization: -48.25 SS G_CDS: 0.16 Total: -48.09 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.76 Total: -23.37 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.68 -7.01 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.692 kcal (2) G-P(sol) polarization free energy of solvation -34.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds