Wall clock time and date at job start Tue Mar 31 2020 14:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47137 * 64.77613 * 3 2 1 5 5 N 1.46500 * 109.46842 * 179.97438 * 4 3 2 6 6 C 1.46505 * 119.99992 * 269.99531 * 5 4 3 7 7 C 1.50696 * 109.47305 * 270.00568 * 6 5 4 8 8 H 1.08005 * 119.99944 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00346 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99567 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00111 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47065 * 60.00499 * 11 9 7 13 13 H 1.48503 * 109.47157 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47464 * 300.00144 * 11 9 7 15 15 C 1.34773 * 120.00485 * 89.99989 * 5 4 3 16 16 O 1.21284 * 120.00226 * 179.97438 * 15 5 4 17 17 C 1.50704 * 119.99747 * 359.97438 * 15 5 4 18 18 N 1.46902 * 109.47009 * 180.02562 * 17 15 5 19 19 C 1.46901 * 110.99959 * 170.00410 * 18 17 15 20 20 C 1.50701 * 109.47298 * 195.66808 * 19 18 17 21 21 O 1.20822 * 119.99560 * 5.27659 * 20 19 18 22 22 O 1.34222 * 119.99800 * 185.28757 * 20 19 18 23 23 C 1.46894 * 111.00129 * 293.95703 * 18 17 15 24 24 C 1.53779 * 113.61556 * 14.01521 * 23 18 17 25 25 C 1.53955 * 87.02139 * 220.04355 * 24 23 18 26 26 C 1.53777 * 113.61575 * 276.40447 * 23 18 17 27 27 H 1.08994 * 109.47377 * 304.76817 * 3 2 1 28 28 H 1.09008 * 109.46962 * 184.77143 * 3 2 1 29 29 H 1.08990 * 109.47519 * 59.99845 * 4 3 2 30 30 H 1.09002 * 109.46732 * 299.99213 * 4 3 2 31 31 H 1.09011 * 109.46845 * 30.00170 * 6 5 4 32 32 H 1.08998 * 109.47410 * 150.00140 * 6 5 4 33 33 H 0.97000 * 119.99689 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47490 * 300.00620 * 17 15 5 35 35 H 1.09006 * 109.47041 * 60.00517 * 17 15 5 36 36 H 1.09002 * 109.46799 * 315.66764 * 19 18 17 37 37 H 1.08997 * 109.47234 * 75.66156 * 19 18 17 38 38 H 0.96707 * 116.99951 * 179.97438 * 22 20 19 39 39 H 1.09004 * 112.84623 * 145.20824 * 23 18 17 40 40 H 1.09001 * 113.61664 * 334.56704 * 24 23 18 41 41 H 1.09005 * 113.61487 * 105.47101 * 24 23 18 42 42 H 1.08999 * 113.54150 * 270.81473 * 25 24 23 43 43 H 1.08995 * 113.66449 * 139.92689 * 25 24 23 44 44 H 1.08999 * 113.61922 * 254.52754 * 26 23 18 45 45 H 1.08997 * 113.61692 * 25.35507 * 26 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.6138 -1.3050 5 7 4.5833 -0.6126 -1.3052 6 6 5.3147 0.5357 -1.8462 7 6 5.5658 0.3237 -3.3169 8 1 5.2158 -0.5765 -3.8002 9 6 6.2422 1.2790 -4.0456 10 7 6.6687 2.3750 -3.4569 11 14 6.5539 1.0159 -5.8685 12 1 5.2566 0.8761 -6.5774 13 1 7.2953 2.1799 -6.4169 14 1 7.3583 -0.2176 -6.0602 15 6 5.2582 -1.6678 -0.8077 16 8 6.4710 -1.6669 -0.8083 17 6 4.5058 -2.8488 -0.2507 18 7 5.4614 -3.8578 0.2256 19 6 4.7780 -4.9124 0.9862 20 6 5.7923 -5.7021 1.7728 21 8 6.9504 -5.3579 1.7823 22 8 5.4091 -6.7879 2.4626 23 6 6.2271 -4.4264 -0.8916 24 6 6.1060 -3.6198 -2.1952 25 6 6.0374 -4.9707 -2.9304 26 6 5.4984 -5.5681 -1.6198 27 1 2.9716 -0.5852 0.8441 28 1 2.9708 1.0250 0.0855 29 1 2.7547 -0.0280 -2.1490 30 1 2.7555 -1.6382 -1.3904 31 1 4.7248 1.4415 -1.7052 32 1 6.2671 0.6377 -1.3260 33 1 7.1449 3.0469 -3.9695 34 1 3.8792 -2.5220 0.5791 35 1 3.8791 -3.2811 -1.0308 36 1 4.0600 -4.4599 1.6702 37 1 4.2552 -5.5763 0.2977 38 1 6.0954 -7.2622 2.9516 39 1 7.2552 -4.6671 -0.6210 40 1 5.1871 -3.0376 -2.2648 41 1 6.9963 -3.0372 -2.4326 42 1 7.0140 -5.3597 -3.2184 43 1 5.3160 -4.9881 -3.7473 44 1 5.8988 -6.5563 -1.3934 45 1 4.4132 -5.5206 -1.5306 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480996.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:50 Heat of formation + Delta-G solvation = -66.608280 kcal Electronic energy + Delta-G solvation = -28674.629223 eV Core-core repulsion = 24693.513277 eV Total energy + Delta-G solvation = -3981.115945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.01332 -40.83641 -39.50797 -37.86666 -36.95265 -36.53858 -35.65535 -34.77629 -32.09123 -30.88207 -29.02968 -27.44110 -26.32279 -25.26635 -25.03750 -23.76575 -22.13823 -20.35209 -19.74168 -18.88984 -18.67338 -18.27175 -18.01737 -17.70308 -17.15724 -16.82363 -16.73598 -16.29872 -16.12809 -15.63701 -15.46349 -15.21399 -14.61545 -14.54051 -14.28506 -14.14926 -13.90996 -13.54127 -13.46779 -13.36840 -13.16449 -13.00342 -12.83176 -12.71842 -12.60813 -12.51629 -12.45943 -12.29886 -12.12007 -11.95180 -11.76963 -11.64980 -11.57913 -11.42865 -11.09390 -10.54251 -10.34469 -9.33216 -9.12087 -8.13314 -6.24555 1.38880 1.40479 1.43748 1.49603 1.74978 1.90301 1.94266 2.05527 2.38439 2.50682 3.01205 3.17699 3.23810 3.59079 3.67864 3.85994 3.92154 3.99960 4.11717 4.18858 4.26960 4.31525 4.43144 4.45773 4.55397 4.68716 4.71062 4.77564 4.90602 4.91878 5.00509 5.12542 5.13039 5.19337 5.27978 5.41743 5.52961 5.68148 5.76903 5.89319 5.98879 6.03129 6.19311 6.67010 6.83992 6.92185 7.17604 7.41578 7.69953 8.92920 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.010203 B = 0.004539 C = 0.003532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.509421 B = 6167.138386 C = 7924.647637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.247 3.753 3 C -0.039 4.039 4 C 0.113 3.887 5 N -0.602 5.602 6 C 0.264 3.736 7 C -0.530 4.530 8 H 0.055 0.945 9 C 0.011 3.989 10 N -0.928 5.928 11 Si 0.952 3.048 12 H -0.262 1.262 13 H -0.286 1.286 14 H -0.281 1.281 15 C 0.503 3.497 16 O -0.564 6.564 17 C 0.043 3.957 18 N -0.528 5.528 19 C 0.060 3.940 20 C 0.479 3.521 21 O -0.541 6.541 22 O -0.513 6.513 23 C 0.081 3.919 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.152 4.152 27 H 0.139 0.861 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.031 0.969 32 H -0.001 1.001 33 H 0.263 0.737 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.111 0.889 38 H 0.425 0.575 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.034 0.966 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.673 -17.653 8.916 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.070 4.070 3 C -0.080 4.080 4 C -0.012 4.012 5 N -0.334 5.334 6 C 0.143 3.857 7 C -0.569 4.569 8 H 0.073 0.927 9 C -0.188 4.188 10 N -0.568 5.568 11 Si 0.778 3.222 12 H -0.186 1.186 13 H -0.211 1.211 14 H -0.207 1.207 15 C 0.292 3.708 16 O -0.442 6.442 17 C -0.087 4.087 18 N -0.253 5.253 19 C -0.068 4.068 20 C 0.321 3.679 21 O -0.430 6.430 22 O -0.327 6.327 23 C -0.027 4.027 24 C -0.177 4.177 25 C -0.180 4.180 26 C -0.191 4.191 27 H 0.157 0.843 28 H 0.134 0.866 29 H 0.100 0.900 30 H 0.128 0.872 31 H 0.049 0.951 32 H 0.017 0.983 33 H 0.072 0.928 34 H 0.159 0.841 35 H 0.110 0.890 36 H 0.168 0.832 37 H 0.128 0.872 38 H 0.287 0.713 39 H 0.092 0.908 40 H 0.102 0.898 41 H 0.053 0.947 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -10.281 -16.942 9.009 21.769 hybrid contribution 1.481 0.019 -1.318 1.983 sum -8.800 -16.924 7.690 20.567 Atomic orbital electron populations 1.81261 1.14446 1.10860 1.10316 1.29150 0.94912 0.91399 0.91560 1.19864 0.80016 1.06615 1.01543 1.21528 0.79165 1.03641 0.96847 1.48059 1.06560 1.18710 1.60081 1.18708 0.91303 0.83683 0.92039 1.21705 1.35844 1.03998 0.95319 0.92657 1.25678 0.95506 0.95057 1.02542 1.70025 1.39429 1.09582 1.37785 0.85706 0.78671 0.77182 0.80683 1.18632 1.21145 1.20708 1.20848 0.88034 0.84143 0.77773 1.90736 1.16375 1.80167 1.56882 1.22193 0.93452 0.90451 1.02631 1.61064 1.25662 1.13391 1.25135 1.21763 0.93255 0.93563 0.98202 1.23691 0.88779 0.78590 0.76815 1.90767 1.22552 1.68455 1.61238 1.84459 1.47197 1.39850 1.61166 1.23054 0.97633 0.94412 0.87575 1.23500 1.01354 0.96472 0.96353 1.22822 1.01687 0.96115 0.97399 1.23466 1.01446 0.98314 0.95870 0.84282 0.86581 0.90036 0.87249 0.95102 0.98298 0.92810 0.84077 0.88963 0.83154 0.87173 0.71345 0.90829 0.89789 0.94697 0.90713 0.90197 0.90475 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.56 18.54 20.01 0.37 -12.19 16 2 C 0.25 4.79 15.43 89.44 1.38 6.17 16 3 C -0.04 -0.62 6.03 28.79 0.17 -0.45 16 4 C 0.11 2.44 5.17 86.38 0.45 2.89 16 5 N -0.60 -20.19 2.46 -826.14 -2.03 -22.22 16 6 C 0.26 12.46 5.16 85.63 0.44 12.90 16 7 C -0.53 -27.92 9.39 25.60 0.24 -27.68 16 8 H 0.06 2.86 7.81 -2.91 -0.02 2.84 16 9 C 0.01 0.60 5.46 84.65 0.46 1.06 16 10 N -0.93 -54.03 13.29 21.45 0.28 -53.75 16 11 Si 0.95 43.57 29.54 68.60 2.03 45.60 16 12 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 13 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 15 C 0.50 17.09 5.20 87.66 0.46 17.54 16 16 O -0.56 -26.23 12.94 -3.04 -0.04 -26.27 16 17 C 0.04 0.88 3.53 85.56 0.30 1.18 16 18 N -0.53 -12.74 4.07 -876.98 -3.57 -16.31 16 19 C 0.06 0.88 5.28 85.56 0.45 1.33 16 20 C 0.48 9.31 8.08 71.24 0.58 9.89 16 21 O -0.54 -16.27 16.21 21.98 0.36 -15.91 16 22 O -0.51 -6.34 13.42 -51.34 -0.69 -7.03 16 23 C 0.08 2.28 3.13 45.44 0.14 2.42 16 24 C -0.14 -4.53 4.92 31.18 0.15 -4.37 16 25 C -0.14 -3.47 8.09 31.18 0.25 -3.22 16 26 C -0.15 -2.92 6.25 31.12 0.19 -2.73 16 27 H 0.14 1.38 7.22 -2.39 -0.02 1.37 16 28 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 30 H 0.11 1.59 6.44 -2.39 -0.02 1.57 16 31 H 0.03 1.46 8.07 -2.38 -0.02 1.44 16 32 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 33 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.14 1.67 6.91 -2.39 -0.02 1.66 16 35 H 0.09 1.42 6.13 -2.38 -0.01 1.41 16 36 H 0.15 1.17 7.81 -2.39 -0.02 1.15 16 37 H 0.11 1.04 5.78 -2.39 -0.01 1.03 16 38 H 0.43 2.33 9.10 -74.05 -0.67 1.66 16 39 H 0.07 2.59 7.62 -2.38 -0.02 2.58 16 40 H 0.08 2.68 4.39 -2.39 -0.01 2.67 16 41 H 0.03 1.50 7.25 -2.38 -0.02 1.48 16 42 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.11 1.46 6.79 -2.39 -0.02 1.44 16 Total: -1.00 -83.99 370.59 2.74 -81.24 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.36 Total: 9.90 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 5.67 Total: 16.94 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -4.95 Total: -104.47 kcal Atomic # 8 Polarization: -48.84 SS G_CDS: -0.37 Total: -49.21 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -83.99 2.74 -81.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480996.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.636 kcal (2) G-P(sol) polarization free energy of solvation -83.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds