Wall clock time and date at job start Tue Mar 31 2020 14:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38040 * 126.28807 * 2 1 4 4 C 1.47424 * 126.41772 * 359.97438 * 3 2 1 5 5 O 1.21601 * 120.00086 * 0.02562 * 4 3 2 6 6 N 1.34787 * 119.99901 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99887 * 180.02562 * 6 4 3 8 8 H 1.09005 * 109.47254 * 34.99866 * 7 6 4 9 9 C 1.52998 * 109.47097 * 154.99865 * 7 6 4 10 10 C 1.53006 * 109.47208 * 296.64441 * 9 7 6 11 11 C 1.52995 * 109.46963 * 174.15521 * 10 9 7 12 12 C 1.52999 * 109.46829 * 294.15829 * 10 9 7 13 13 C 1.50694 * 109.47125 * 275.00008 * 7 6 4 14 14 O 1.20824 * 120.00278 * 359.97438 * 13 7 6 15 15 O 1.34233 * 120.00169 * 179.97438 * 13 7 6 16 16 C 1.41291 * 107.16758 * 179.97438 * 3 2 1 17 17 N 1.30449 * 108.02147 * 359.73458 * 16 3 2 18 18 N 1.34257 * 126.29070 * 179.97438 * 2 1 3 19 19 C 1.46500 * 125.75316 * 0.02562 * 18 2 1 20 20 C 1.50693 * 109.47415 * 89.99427 * 19 18 2 21 21 H 1.07997 * 120.00474 * 359.97438 * 20 19 18 22 22 C 1.37880 * 119.99521 * 179.72130 * 20 19 18 23 23 N 1.31522 * 119.99681 * 180.27136 * 22 20 19 24 24 Si 1.86799 * 120.00421 * 0.27686 * 22 20 19 25 25 H 1.48503 * 109.47063 * 89.99994 * 24 22 20 26 26 H 1.48497 * 109.47094 * 209.99787 * 24 22 20 27 27 H 1.48498 * 109.47032 * 329.99904 * 24 22 20 28 28 H 1.09000 * 109.47244 * 270.03025 * 1 2 3 29 29 H 1.09002 * 109.46690 * 30.03225 * 1 2 3 30 30 H 1.09001 * 109.47138 * 150.02357 * 1 2 3 31 31 H 0.96994 * 120.00219 * 359.97438 * 6 4 3 32 32 H 1.08996 * 109.47317 * 56.64194 * 9 7 6 33 33 H 1.08999 * 109.46905 * 176.64810 * 9 7 6 34 34 H 1.08999 * 109.46682 * 54.15704 * 10 9 7 35 35 H 1.09005 * 109.47246 * 57.21582 * 11 10 9 36 36 H 1.09009 * 109.47042 * 177.20784 * 11 10 9 37 37 H 1.08999 * 109.47491 * 297.20953 * 11 10 9 38 38 H 1.09002 * 109.47585 * 59.99797 * 12 10 9 39 39 H 1.08999 * 109.46982 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.47387 * 299.99443 * 12 10 9 41 41 H 0.96696 * 117.00160 * 180.02562 * 15 13 7 42 42 H 1.08000 * 125.98921 * 179.97438 * 16 3 2 43 43 H 1.09000 * 109.47011 * 329.98999 * 19 18 2 44 44 H 1.09008 * 109.46371 * 209.99655 * 19 18 2 45 45 H 0.96997 * 120.00065 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7877 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3645 4.9095 -0.0009 8 1 1.4529 5.0062 0.5889 9 6 3.4613 5.7851 0.6082 10 6 3.6751 5.3909 2.0711 11 6 4.8678 6.1632 2.6382 12 6 2.4195 5.7266 2.8783 13 6 2.0963 5.3521 -1.4162 14 8 2.2534 4.5788 -2.3312 15 8 1.6830 6.6057 -1.6605 16 6 3.6590 0.6499 0.0006 17 7 3.6340 -0.6544 0.0067 18 7 2.3017 -1.0821 0.0005 19 6 1.8501 -2.4758 0.0006 20 6 1.6956 -2.9539 -1.4201 21 1 1.9117 -2.2864 -2.2411 22 6 1.2832 -4.2453 -1.6718 23 7 1.1535 -4.6643 -2.9117 24 14 0.9087 -5.3998 -0.2518 25 1 -0.5240 -5.2790 0.1196 26 1 1.1978 -6.7977 -0.6610 27 1 1.7545 -5.0404 0.9146 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8897 -0.5144 30 1 -0.3633 -0.8902 -0.5135 31 1 3.7462 3.2974 -0.0006 32 1 4.3892 5.6429 0.0543 33 1 3.1625 6.8319 0.5540 34 1 3.8721 4.3207 2.1338 35 1 4.6922 7.2335 2.5303 36 1 4.9896 5.9197 3.6938 37 1 5.7714 5.8866 2.0950 38 1 1.5697 5.1764 2.4742 39 1 2.5716 5.4453 3.9204 40 1 2.2225 6.7968 2.8156 41 1 1.5236 6.8432 -2.5842 42 1 4.5449 1.2676 0.0004 43 1 0.8913 -2.5470 0.5142 44 1 2.5847 -3.0956 0.5148 45 1 0.8638 -5.5729 -3.0889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594256826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:42 Heat of formation + Delta-G solvation = -72.914031 kcal Electronic energy + Delta-G solvation = -27733.691839 eV Core-core repulsion = 23752.302456 eV Total energy + Delta-G solvation = -3981.389383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02988 -40.53006 -38.82049 -37.14959 -36.20593 -34.19321 -33.81169 -32.18336 -31.36624 -30.18406 -27.74882 -27.47052 -26.71466 -25.25330 -23.24726 -22.41154 -21.25682 -20.31394 -19.99316 -19.02635 -18.21014 -17.35036 -17.20640 -16.92995 -16.07304 -15.68497 -15.26049 -15.04629 -14.86059 -14.39212 -14.32634 -14.06259 -13.77932 -13.47084 -13.37775 -12.86389 -12.71656 -12.57743 -12.54977 -12.44914 -12.25281 -12.10769 -12.02251 -11.64551 -11.59003 -11.36901 -11.21937 -10.99664 -10.97612 -10.84909 -10.63878 -10.40967 -10.24092 -9.79331 -9.54462 -9.23882 -8.84750 -8.65143 -7.99132 -6.32267 -4.37285 2.05271 2.10947 2.58544 2.79824 3.07070 3.12512 3.18292 3.22243 3.43912 3.88754 4.15965 4.26674 4.49108 4.53707 4.83629 4.90059 4.99194 5.09263 5.11632 5.17833 5.30682 5.35180 5.39820 5.48536 5.53024 5.60643 5.63931 5.68068 5.85159 5.86981 6.01509 6.02073 6.05423 6.24355 6.31040 6.36700 6.44832 6.54395 6.59639 7.00699 7.18683 7.54383 7.58340 7.77272 8.20409 8.26751 8.47508 8.71823 9.21303 10.79982 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019468 B = 0.002942 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.904178 B = 9514.228553 C =10123.479254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.171 3.829 3 C -0.327 4.327 4 C 0.613 3.387 5 O -0.551 6.551 6 N -0.713 5.713 7 C 0.162 3.838 8 H 0.129 0.871 9 C -0.117 4.117 10 C -0.097 4.097 11 C -0.147 4.147 12 C -0.153 4.153 13 C 0.460 3.540 14 O -0.497 6.497 15 O -0.519 6.519 16 C 0.063 3.937 17 N -0.291 5.291 18 N -0.313 5.313 19 C 0.225 3.775 20 C -0.547 4.547 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.882 5.882 24 Si 0.873 3.127 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.405 0.595 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.408 0.592 42 H 0.177 0.823 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 22.914 10.865 25.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.034 3.966 3 C -0.342 4.342 4 C 0.404 3.596 5 O -0.429 6.429 6 N -0.366 5.366 7 C 0.054 3.946 8 H 0.147 0.853 9 C -0.155 4.155 10 C -0.115 4.115 11 C -0.204 4.204 12 C -0.210 4.210 13 C 0.299 3.701 14 O -0.383 6.383 15 O -0.331 6.331 16 C -0.124 4.124 17 N -0.111 5.111 18 N -0.090 5.090 19 C 0.106 3.894 20 C -0.585 4.585 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.519 5.519 24 Si 0.699 3.301 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.240 0.760 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.267 0.733 42 H 0.194 0.806 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.911 21.327 10.897 24.267 hybrid contribution -0.208 -0.007 -0.350 0.408 sum 3.703 21.320 10.546 24.072 Atomic orbital electron populations 1.20654 0.86748 1.05244 1.03200 1.21456 0.94965 0.86354 0.93792 1.19545 0.93210 0.92165 1.29317 1.17292 0.84854 0.83930 0.73486 1.90696 1.16675 1.84317 1.51251 1.45484 1.10337 1.03455 1.77363 1.20394 1.01928 0.82945 0.89299 0.85348 1.21936 0.97412 0.99811 0.96377 1.21124 0.96000 1.01167 0.93235 1.21833 0.97397 1.00180 1.01016 1.21921 0.97416 1.01618 1.00032 1.24273 0.73097 0.79277 0.93445 1.90774 1.47280 1.53655 1.46560 1.84507 1.79628 1.32263 1.36682 1.23733 0.96353 0.92542 0.99809 1.77142 0.98081 1.12348 1.23529 1.48903 1.02752 1.07523 1.49773 1.20155 0.95724 0.73301 1.00209 1.21110 1.48192 0.99125 0.90047 0.89988 1.24802 0.94300 0.97392 0.95874 1.69870 1.45206 1.18111 1.18694 0.86899 0.79523 0.81028 0.82691 1.19485 1.20371 1.18767 0.90420 0.88406 0.89770 0.75992 0.90611 0.88924 0.90260 0.92606 0.92417 0.92565 0.92191 0.92464 0.92477 0.73315 0.80566 0.93402 0.92676 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 9.34 36.01 0.34 -1.46 16 2 C 0.17 3.46 7.01 -81.60 -0.57 2.88 16 3 C -0.33 -5.95 6.13 -105.07 -0.64 -6.59 16 4 C 0.61 10.08 7.64 -12.52 -0.10 9.98 16 5 O -0.55 -10.31 14.50 5.28 0.08 -10.24 16 6 N -0.71 -8.58 3.89 -56.01 -0.22 -8.80 16 7 C 0.16 1.65 2.34 -69.09 -0.16 1.49 16 8 H 0.13 1.38 5.88 -51.93 -0.31 1.07 16 9 C -0.12 -0.78 4.18 -26.73 -0.11 -0.90 16 10 C -0.10 -0.62 2.86 -90.62 -0.26 -0.88 16 11 C -0.15 -0.79 9.19 37.15 0.34 -0.45 16 12 C -0.15 -1.04 8.97 37.16 0.33 -0.71 16 13 C 0.46 5.53 7.66 36.00 0.28 5.81 16 14 O -0.50 -8.13 17.08 -18.75 -0.32 -8.45 16 15 O -0.52 -4.49 13.26 -39.27 -0.52 -5.01 16 16 C 0.06 1.08 11.50 -16.98 -0.20 0.89 16 17 N -0.29 -6.17 12.50 30.86 0.39 -5.78 16 18 N -0.31 -6.94 3.56 -57.77 -0.21 -7.15 16 19 C 0.22 5.25 4.85 -5.20 -0.03 5.23 16 20 C -0.55 -15.11 9.94 -34.44 -0.34 -15.46 16 21 H 0.08 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 23 N -0.88 -26.07 13.96 55.43 0.77 -25.30 16 24 Si 0.87 19.82 27.47 -169.99 -4.67 15.15 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.77 6.50 -51.93 -0.34 1.44 16 30 H 0.08 1.56 7.70 -51.93 -0.40 1.16 16 31 H 0.40 3.94 7.52 -40.82 -0.31 3.63 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.54 8.04 -51.93 -0.42 0.12 16 34 H 0.08 0.57 7.51 -51.93 -0.39 0.18 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 37 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.06 0.49 6.52 -51.93 -0.34 0.15 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.41 2.05 9.10 45.56 0.41 2.46 16 42 H 0.18 2.14 7.50 -52.49 -0.39 1.75 16 43 H 0.05 1.03 7.05 -51.93 -0.37 0.66 16 44 H 0.06 1.29 7.19 -51.92 -0.37 0.91 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -35.63 377.94 -5.98 -41.61 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -5.76 Total: 6.29 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.22 Total: 1.98 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.74 Total: -47.03 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.76 Total: -23.69 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.67 Total: 15.15 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.63 -5.98 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594256826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.303 kcal (2) G-P(sol) polarization free energy of solvation -35.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds