Wall clock time and date at job start Tue Mar 31 2020 14:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35242 * 126.07111 * 2 1 4 4 C 1.40411 * 107.86614 * 179.85532 * 3 2 1 5 5 N 1.40156 * 125.96858 * 180.13102 * 4 3 2 6 6 C 1.34778 * 120.00480 * 0.31124 * 5 4 3 7 7 O 1.21296 * 119.99529 * 354.74373 * 6 5 4 8 8 C 1.50698 * 120.00147 * 174.74128 * 6 5 4 9 9 H 1.08996 * 109.47152 * 322.00188 * 8 6 5 10 10 C 1.50704 * 109.46747 * 202.00513 * 8 6 5 11 11 O 1.20816 * 120.00498 * 359.97438 * 10 8 6 12 12 O 1.34240 * 119.99508 * 180.02562 * 10 8 6 13 13 C 1.52996 * 109.47170 * 82.00622 * 8 6 5 14 14 C 1.53001 * 109.47069 * 64.99481 * 13 8 6 15 15 C 1.52999 * 109.47478 * 184.99850 * 13 8 6 16 16 C 1.53003 * 109.47106 * 304.99440 * 13 8 6 17 17 N 1.31210 * 108.05405 * 0.41430 * 4 3 2 18 18 N 1.34973 * 126.06859 * 180.31612 * 2 1 3 19 19 C 1.46500 * 125.97557 * 359.95568 * 18 2 1 20 20 C 1.50700 * 109.46783 * 90.00704 * 19 18 2 21 21 H 1.07993 * 120.00406 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99804 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00344 * 359.97438 * 22 20 19 24 24 Si 1.86809 * 120.00146 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46571 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47468 * 119.99554 * 24 22 20 27 27 H 1.48502 * 109.46837 * 239.99933 * 24 22 20 28 28 H 1.09007 * 109.46727 * 269.69003 * 1 2 3 29 29 H 1.09001 * 109.47527 * 149.69096 * 1 2 3 30 30 H 1.09001 * 109.47343 * 29.68523 * 1 2 3 31 31 H 1.07994 * 126.06461 * 359.97438 * 3 2 1 32 32 H 0.97001 * 119.99824 * 180.30810 * 5 4 3 33 33 H 0.96698 * 116.99425 * 180.02562 * 12 10 8 34 34 H 1.08994 * 109.47050 * 60.00656 * 14 13 8 35 35 H 1.09003 * 109.46925 * 180.02562 * 14 13 8 36 36 H 1.08998 * 109.47242 * 299.99833 * 14 13 8 37 37 H 1.08999 * 109.47224 * 59.99362 * 15 13 8 38 38 H 1.09000 * 109.47564 * 180.02562 * 15 13 8 39 39 H 1.09002 * 109.46676 * 299.99998 * 15 13 8 40 40 H 1.09009 * 109.46679 * 61.36681 * 16 13 8 41 41 H 1.08991 * 109.47159 * 181.36137 * 16 13 8 42 42 H 1.08998 * 109.47303 * 301.36634 * 16 13 8 43 43 H 1.09001 * 109.47178 * 209.99833 * 19 18 2 44 44 H 1.08993 * 109.46937 * 330.00703 * 19 18 2 45 45 H 0.96997 * 120.00435 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6545 0.0034 5 7 4.7734 1.4749 0.0071 6 6 4.6367 2.8157 0.0140 7 8 3.5345 3.3133 -0.0793 8 6 5.8532 3.6965 0.1375 9 1 6.5614 3.2428 0.8309 10 6 5.4420 5.0512 0.6543 11 8 4.2804 5.2782 0.8968 12 8 6.3663 6.0059 0.8441 13 6 6.5115 3.8524 -1.2347 14 6 5.5631 4.6012 -2.1732 15 6 7.8137 4.6423 -1.0890 16 6 6.8161 2.4695 -1.8143 17 7 3.6336 -0.6576 -0.0037 18 7 2.3016 -1.0910 -0.0060 19 6 1.8500 -2.4846 -0.0128 20 6 1.6944 -2.9553 -1.4359 21 1 1.9100 -2.2834 -2.2535 22 6 1.2759 -4.2433 -1.6942 23 7 1.0129 -5.0614 -0.6986 24 14 1.0824 -4.8266 -3.4583 25 1 1.4375 -3.7229 -4.3862 26 1 1.9809 -5.9842 -3.6984 27 1 -0.3258 -5.2360 -3.6925 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3634 -0.8872 -0.5186 30 1 -0.3634 0.8928 -0.5089 31 1 1.9720 2.1210 -0.0004 32 1 5.6584 1.0776 0.0047 33 1 6.0547 6.8585 1.1773 34 1 5.3463 5.5863 -1.7604 35 1 6.0320 4.7118 -3.1510 36 1 4.6355 4.0384 -2.2772 37 1 8.4893 4.1089 -0.4203 38 1 8.2825 4.7537 -2.0667 39 1 7.5967 5.6274 -0.6761 40 1 5.8857 1.9157 -1.9409 41 1 7.3070 2.5809 -2.7811 42 1 7.4723 1.9269 -1.1339 43 1 2.5849 -3.1072 0.4974 44 1 0.8917 -2.5584 0.5011 45 1 0.7188 -5.9677 -0.8802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594314195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:24 Heat of formation + Delta-G solvation = -54.483238 kcal Electronic energy + Delta-G solvation = -28164.651300 eV Core-core repulsion = 24184.061136 eV Total energy + Delta-G solvation = -3980.590164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.49735 -40.48482 -39.13427 -37.15557 -36.22126 -34.83851 -33.38022 -31.49274 -30.90881 -29.74619 -27.69199 -27.56229 -26.58761 -26.32856 -23.64057 -22.65567 -21.35573 -20.01405 -19.82480 -18.88857 -18.12193 -17.01156 -16.72672 -16.67475 -16.22207 -15.91250 -15.24741 -15.21021 -14.55442 -14.39086 -14.13561 -14.05416 -13.61860 -13.48797 -13.28045 -12.97151 -12.50628 -12.48758 -12.36760 -12.23928 -12.15053 -11.98755 -11.71947 -11.67280 -11.43195 -11.37459 -11.12940 -11.03565 -11.03130 -10.86095 -10.57298 -10.39266 -10.25547 -9.90586 -9.52455 -9.49101 -8.65805 -7.94041 -7.46002 -6.26494 -4.34169 2.00058 2.16625 2.41997 2.85626 3.06205 3.19585 3.27580 3.33691 3.68167 3.77576 4.18003 4.27998 4.34683 4.40314 4.70981 4.85024 4.97590 5.07075 5.07918 5.34593 5.40512 5.44994 5.52067 5.60135 5.65171 5.70994 5.74951 5.92071 5.94544 6.03836 6.10278 6.10802 6.23120 6.26769 6.47627 6.55634 6.71208 6.93193 7.04561 7.41769 7.61855 7.66740 7.69778 7.87987 8.04624 8.21103 8.63871 8.74666 9.32389 10.80760 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020729 B = 0.002975 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.430253 B = 9408.774100 C =10092.437960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.092 3.908 3 C -0.290 4.290 4 C 0.264 3.736 5 N -0.629 5.629 6 C 0.526 3.474 7 O -0.473 6.473 8 C -0.092 4.092 9 H 0.129 0.871 10 C 0.487 3.513 11 O -0.470 6.470 12 O -0.512 6.512 13 C -0.052 4.052 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.159 4.159 17 N -0.319 5.319 18 N -0.316 5.316 19 C 0.258 3.742 20 C -0.535 4.535 21 H 0.065 0.935 22 C 0.065 3.935 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.410 0.590 33 H 0.408 0.592 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 19.399 1.364 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.321 4.321 4 C 0.011 3.989 5 N -0.279 5.279 6 C 0.309 3.691 7 O -0.343 6.343 8 C -0.114 4.114 9 H 0.147 0.853 10 C 0.326 3.674 11 O -0.354 6.354 12 O -0.326 6.326 13 C -0.052 4.052 14 C -0.208 4.208 15 C -0.206 4.206 16 C -0.217 4.217 17 N -0.150 5.150 18 N -0.099 5.099 19 C 0.140 3.860 20 C -0.574 4.574 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.207 1.207 27 H -0.206 1.206 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.176 0.824 32 H 0.246 0.754 33 H 0.267 0.733 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.053 18.105 1.280 21.788 hybrid contribution -0.186 0.437 -0.628 0.787 sum 11.867 18.542 0.652 22.024 Atomic orbital electron populations 1.20381 0.87916 1.03879 1.02551 1.21059 0.94929 0.87110 1.00804 1.21253 0.89754 0.99847 1.21198 1.18927 0.87057 0.89559 1.03315 1.42490 1.07652 1.04601 1.73146 1.19577 0.90029 0.81582 0.77949 1.90774 1.25862 1.73140 1.44507 1.21158 0.98065 0.91076 1.01126 0.85285 1.22352 0.83675 0.86100 0.75274 1.90874 1.19194 1.80379 1.44926 1.84553 1.42883 1.25962 1.79174 1.20467 0.96228 0.97860 0.90664 1.22009 0.99502 1.00104 0.99169 1.22092 0.94951 1.01297 1.02299 1.22160 1.02941 0.94709 1.01858 1.77243 0.99996 1.08374 1.29368 1.48995 1.00927 1.07778 1.52166 1.19695 0.95988 0.71320 0.98949 1.21364 1.46676 0.97976 0.91379 0.91674 1.24932 0.94683 0.96058 0.98131 1.69928 1.44979 1.06954 1.31088 0.86308 0.77884 0.78786 0.83754 1.19569 1.20653 1.20640 0.91076 0.89897 0.90598 0.82360 0.75408 0.73266 0.92626 0.91521 0.91473 0.92143 0.91983 0.90147 0.91247 0.91063 0.91676 0.92990 0.92793 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.55 9.89 36.00 0.36 -1.19 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -6.03 9.52 -39.83 -0.38 -6.41 16 4 C 0.26 5.31 8.10 -154.40 -1.25 4.06 16 5 N -0.63 -9.51 4.24 -11.13 -0.05 -9.56 16 6 C 0.53 7.64 5.24 -10.99 -0.06 7.58 16 7 O -0.47 -8.71 11.35 -18.40 -0.21 -8.92 16 8 C -0.09 -0.92 2.05 -92.92 -0.19 -1.11 16 9 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 10 C 0.49 5.32 6.06 36.01 0.22 5.53 16 11 O -0.47 -7.22 15.20 -26.67 -0.41 -7.63 16 12 O -0.51 -3.49 10.57 -39.28 -0.42 -3.91 16 13 C -0.05 -0.43 0.57 -154.51 -0.09 -0.52 16 14 C -0.15 -1.49 7.97 37.16 0.30 -1.20 16 15 C -0.15 -0.95 8.11 37.16 0.30 -0.65 16 16 C -0.16 -1.32 7.25 37.16 0.27 -1.05 16 17 N -0.32 -7.27 12.59 31.44 0.40 -6.88 16 18 N -0.32 -7.48 3.59 -58.33 -0.21 -7.69 16 19 C 0.26 6.60 5.81 -5.19 -0.03 6.57 16 20 C -0.54 -14.68 9.39 -34.44 -0.32 -15.00 16 21 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.95 13.29 55.43 0.74 -24.22 16 24 Si 0.91 21.01 29.54 -169.99 -5.02 15.99 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.16 3.28 5.93 -52.49 -0.31 2.97 16 32 H 0.41 4.91 7.64 -40.82 -0.31 4.60 16 33 H 0.41 1.25 9.10 45.56 0.41 1.66 16 34 H 0.05 0.56 7.07 -51.93 -0.37 0.19 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.85 7.09 -51.93 -0.37 0.48 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.52 5.46 -51.93 -0.28 0.24 16 40 H 0.07 0.75 6.17 -51.92 -0.32 0.43 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.42 8.03 -51.93 -0.42 0.01 16 43 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 45 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -34.88 367.14 -6.88 -41.75 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -5.69 Total: 5.84 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.55 Total: -0.31 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: 0.88 Total: -48.34 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.03 Total: -20.46 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.88 -6.88 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594314195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.730 kcal (2) G-P(sol) polarization free energy of solvation -34.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds