Wall clock time and date at job start Tue Mar 31 2020 14:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40162 * 125.97631 * 180.13084 * 4 3 2 6 6 C 1.34779 * 119.99437 * 0.31570 * 5 4 3 7 7 O 1.21291 * 120.00483 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99258 * 180.02562 * 6 5 4 9 9 H 1.08995 * 109.47288 * 299.99182 * 8 6 5 10 10 C 1.50697 * 109.47358 * 59.99773 * 8 6 5 11 11 O 1.20818 * 119.99883 * 0.02562 * 10 8 6 12 12 O 1.34227 * 119.99788 * 179.97438 * 10 8 6 13 13 C 1.53004 * 109.46888 * 179.97438 * 8 6 5 14 14 C 1.53000 * 109.47186 * 59.99756 * 13 8 6 15 15 C 1.52993 * 109.47284 * 179.97438 * 13 8 6 16 16 C 1.53006 * 109.47078 * 299.99877 * 13 8 6 17 17 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 18 18 N 1.34968 * 126.07013 * 180.30992 * 2 1 3 19 19 C 1.46509 * 125.97450 * 359.96761 * 18 2 1 20 20 C 1.50698 * 109.47025 * 89.99735 * 19 18 2 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 179.97438 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47105 * 90.00179 * 24 22 20 26 26 H 1.48499 * 109.46684 * 210.00001 * 24 22 20 27 27 H 1.48503 * 109.47226 * 329.99788 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.07995 * 126.06990 * 359.97438 * 3 2 1 32 32 H 0.96991 * 120.00083 * 180.30991 * 5 4 3 33 33 H 0.96695 * 117.00029 * 180.02562 * 12 10 8 34 34 H 1.08993 * 109.47436 * 59.99939 * 14 13 8 35 35 H 1.09003 * 109.47385 * 180.02562 * 14 13 8 36 36 H 1.09005 * 109.47022 * 299.99810 * 14 13 8 37 37 H 1.09003 * 109.47280 * 59.99780 * 15 13 8 38 38 H 1.09003 * 109.47365 * 180.02562 * 15 13 8 39 39 H 1.09003 * 109.47340 * 299.99837 * 15 13 8 40 40 H 1.09001 * 109.47087 * 59.99650 * 16 13 8 41 41 H 1.08995 * 109.47204 * 179.97438 * 16 13 8 42 42 H 1.09003 * 109.46919 * 300.00346 * 16 13 8 43 43 H 1.08994 * 109.46750 * 210.00045 * 19 18 2 44 44 H 1.09004 * 109.46474 * 329.99737 * 19 18 2 45 45 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7736 1.4749 0.0072 6 6 4.6367 2.8157 0.0141 7 8 3.5302 3.3124 0.0166 8 6 5.8587 3.6977 0.0175 9 1 6.4547 3.4893 0.9060 10 6 6.6808 3.4219 -1.2149 11 8 6.3120 2.5944 -2.0143 12 8 7.8221 4.0963 -1.4251 13 6 5.4279 5.1658 0.0247 14 6 4.5929 5.4462 1.2757 15 6 6.6684 6.0613 0.0288 16 6 4.5915 5.4580 -1.2228 17 7 3.6337 -0.6577 -0.0036 18 7 2.3017 -1.0909 -0.0059 19 6 1.8500 -2.4847 -0.0128 20 6 1.6945 -2.9553 -1.4359 21 1 1.9108 -2.2836 -2.2535 22 6 1.2770 -4.2437 -1.6941 23 7 1.0140 -5.0617 -0.6985 24 14 1.0848 -4.8273 -3.4582 25 1 2.3659 -5.4131 -3.9281 26 1 0.0159 -5.8560 -3.5255 27 1 0.7198 -3.6768 -4.3233 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0004 32 1 5.6584 1.0776 0.0049 33 1 8.3150 3.8851 -2.2298 34 1 5.1886 5.2381 2.1644 35 1 4.2856 6.4920 1.2806 36 1 3.7090 4.8083 1.2731 37 1 7.2636 5.8616 -0.8622 38 1 6.3615 7.1072 0.0343 39 1 7.2639 5.8531 0.9177 40 1 3.7077 4.8199 -1.2253 41 1 4.2842 6.5037 -1.2175 42 1 5.1864 5.2581 -2.1141 43 1 2.5849 -3.1072 0.4976 44 1 0.8916 -2.5584 0.5012 45 1 0.7199 -5.9680 -0.8802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594314196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:27 Heat of formation + Delta-G solvation = -74.982599 kcal Electronic energy + Delta-G solvation = -28166.772854 eV Core-core repulsion = 24185.293771 eV Total energy + Delta-G solvation = -3981.479083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.65604 -41.93636 -40.40603 -37.91861 -37.13193 -36.23216 -35.33084 -33.16442 -32.66554 -30.72479 -28.52854 -28.20312 -28.03422 -27.86604 -25.21447 -24.01482 -22.67679 -21.34648 -20.92364 -20.02820 -19.06992 -18.82646 -18.26583 -17.90021 -17.57272 -17.11556 -16.84166 -16.37535 -16.10192 -15.68766 -15.55942 -15.03272 -14.72268 -14.69117 -14.37743 -14.08391 -13.87561 -13.80970 -13.61655 -13.56076 -13.19909 -12.96495 -12.91405 -12.84764 -12.71400 -12.66674 -12.39966 -12.28659 -12.15177 -11.97818 -11.78621 -11.68471 -11.51850 -11.49071 -11.28141 -10.76211 -10.63288 -9.58946 -9.15051 -8.34771 -6.52466 0.77613 1.02698 1.18223 1.35684 1.37075 1.37774 1.48959 1.91102 2.24222 2.31143 2.36693 2.94705 3.17755 3.48872 3.79598 3.87103 4.12164 4.15569 4.17973 4.32017 4.42608 4.46927 4.74650 4.76843 4.82116 4.84580 4.88704 4.96072 4.97096 4.98589 5.09547 5.11025 5.17276 5.21876 5.25420 5.45919 5.49193 5.51842 5.53723 5.67626 5.79338 5.93172 6.18132 6.25207 6.60241 6.87516 6.91913 7.04831 7.18553 8.71193 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020436 B = 0.002998 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.805819 B = 9338.260610 C =10029.673043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.087 3.913 3 C -0.295 4.295 4 C 0.274 3.726 5 N -0.617 5.617 6 C 0.536 3.464 7 O -0.510 6.510 8 C -0.089 4.089 9 H 0.172 0.828 10 C 0.499 3.501 11 O -0.542 6.542 12 O -0.486 6.486 13 C -0.036 4.036 14 C -0.152 4.152 15 C -0.148 4.148 16 C -0.159 4.159 17 N -0.361 5.361 18 N -0.342 5.342 19 C 0.276 3.724 20 C -0.555 4.555 21 H 0.046 0.954 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.970 3.030 25 H -0.275 1.275 26 H -0.268 1.268 27 H -0.271 1.271 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.171 0.829 32 H 0.417 0.583 33 H 0.429 0.571 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.024 0.976 44 H 0.054 0.946 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 23.544 3.266 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.326 4.326 4 C 0.020 3.980 5 N -0.265 5.265 6 C 0.322 3.678 7 O -0.384 6.384 8 C -0.110 4.110 9 H 0.189 0.811 10 C 0.341 3.659 11 O -0.432 6.432 12 O -0.300 6.300 13 C -0.037 4.037 14 C -0.209 4.209 15 C -0.204 4.204 16 C -0.216 4.216 17 N -0.192 5.192 18 N -0.125 5.125 19 C 0.157 3.843 20 C -0.593 4.593 21 H 0.065 0.935 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.794 3.206 25 H -0.201 1.201 26 H -0.192 1.192 27 H -0.196 1.196 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.189 0.811 32 H 0.254 0.746 33 H 0.292 0.708 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.058 0.942 43 H 0.042 0.958 44 H 0.072 0.928 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.974 22.444 3.449 25.221 hybrid contribution 0.247 -0.732 -1.430 1.626 sum 11.221 21.712 2.019 24.524 Atomic orbital electron populations 1.20502 0.85253 1.04339 1.04195 1.21785 0.96724 0.86437 0.99424 1.21430 0.89575 1.00045 1.21558 1.19314 0.88739 0.89222 1.00760 1.42567 1.06869 1.05261 1.71755 1.20366 0.91380 0.80723 0.75314 1.90549 1.27275 1.73107 1.47488 1.21521 0.92859 0.98198 0.98472 0.81065 1.22705 0.79870 0.76931 0.86376 1.90883 1.70791 1.34382 1.47130 1.84551 1.34196 1.61378 1.49863 1.20342 0.97541 0.88287 0.97481 1.22094 1.00428 1.02941 0.95463 1.22127 0.95170 0.98853 1.04275 1.22173 1.00534 1.03131 0.95755 1.77179 1.00196 1.10197 1.31626 1.48794 1.01690 1.07579 1.54409 1.19241 0.94930 0.72428 0.97686 1.21435 1.47648 0.98431 0.91793 0.93532 1.25711 0.93901 0.95832 1.02245 1.69989 1.45013 1.07411 1.33061 0.85377 0.78318 0.78214 0.78712 1.20068 1.19218 1.19566 0.88673 0.91555 0.87933 0.81141 0.74615 0.70841 0.91263 0.91091 0.92077 0.90208 0.91204 0.90785 0.92255 0.90685 0.94234 0.95794 0.92836 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.88 9.89 71.24 0.70 -2.17 16 2 C 0.09 3.74 6.92 41.38 0.29 4.02 16 3 C -0.30 -12.26 9.52 22.11 0.21 -12.05 16 4 C 0.27 11.60 8.11 133.32 1.08 12.68 16 5 N -0.62 -20.12 4.84 -307.50 -1.49 -21.60 16 6 C 0.54 14.83 6.03 87.66 0.53 15.36 16 7 O -0.51 -16.16 8.48 -3.06 -0.03 -16.18 16 8 C -0.09 -1.56 2.05 -12.28 -0.03 -1.59 16 9 H 0.17 1.78 8.14 -2.39 -0.02 1.76 16 10 C 0.50 9.22 6.17 71.23 0.44 9.66 16 11 O -0.54 -15.25 16.15 21.99 0.36 -14.90 16 12 O -0.49 -4.79 10.34 -51.39 -0.53 -5.32 16 13 C -0.04 -0.55 0.54 -52.18 -0.03 -0.58 16 14 C -0.15 -2.38 8.17 71.98 0.59 -1.80 16 15 C -0.15 -1.46 7.95 71.98 0.57 -0.89 16 16 C -0.16 -3.14 7.93 71.98 0.57 -2.57 16 17 N -0.36 -17.76 12.59 -54.44 -0.69 -18.44 16 18 N -0.34 -17.09 3.59 -338.43 -1.22 -18.31 16 19 C 0.28 14.95 5.81 85.63 0.50 15.45 16 20 C -0.55 -31.98 9.39 25.60 0.24 -31.74 16 21 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 22 C 0.02 1.35 5.46 84.66 0.46 1.82 16 23 N -0.92 -52.45 13.29 21.45 0.28 -52.17 16 24 Si 0.97 44.07 29.54 68.60 2.03 46.09 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.07 2.47 7.71 -2.39 -0.02 2.46 16 30 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 31 H 0.17 6.61 5.92 -2.91 -0.02 6.59 16 32 H 0.42 11.91 8.51 -92.71 -0.79 11.12 16 33 H 0.43 1.17 9.10 -74.06 -0.67 0.50 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 1.34 5.51 -2.38 -0.01 1.33 16 37 H 0.08 0.79 5.32 -2.39 -0.01 0.78 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 1.57 5.51 -2.39 -0.01 1.56 16 41 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.04 0.79 7.22 -2.39 -0.02 0.78 16 43 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 2.85 7.65 -2.39 -0.02 2.83 16 45 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -76.15 365.92 4.43 -71.72 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: -0.42 Total: 23.50 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 6.13 Total: 5.62 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -3.11 Total: -110.52 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -0.20 Total: -36.41 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -76.15 4.43 -71.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594314196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.263 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds