Wall clock time and date at job start Tue Mar 31 2020 13:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47154 * 2 1 4 4 C 1.46894 * 110.99666 * 69.71372 * 3 2 1 5 5 C 1.50703 * 109.47299 * 72.39299 * 4 3 2 6 6 O 1.20821 * 119.99914 * 5.89122 * 5 4 3 7 7 O 1.34227 * 119.99835 * 185.89943 * 5 4 3 8 8 C 1.46899 * 111.00298 * 305.75917 * 3 2 1 9 9 C 1.53007 * 109.47037 * 287.52095 * 8 3 2 10 10 H 1.08998 * 109.47036 * 306.50115 * 9 8 3 11 11 O 1.42897 * 109.46894 * 66.49827 * 9 8 3 12 12 C 1.52993 * 109.47070 * 186.50235 * 9 8 3 13 13 O 1.42897 * 109.47296 * 175.00187 * 12 9 8 14 14 C 1.35671 * 117.00483 * 179.97438 * 13 12 9 15 15 C 1.39317 * 119.81475 * 359.71929 * 14 13 12 16 16 C 1.36442 * 120.18579 * 179.75838 * 15 14 13 17 17 C 1.40826 * 119.80694 * 0.52045 * 16 15 14 18 18 C 1.41219 * 120.17591 * 179.71985 * 17 16 15 19 19 H 1.07996 * 120.00530 * 29.14129 * 18 17 16 20 20 C 1.39902 * 119.99653 * 209.14706 * 18 17 16 21 21 N 1.30874 * 119.99882 * 10.23541 * 20 18 17 22 22 Si 1.86802 * 119.99522 * 190.23532 * 20 18 17 23 23 H 1.48502 * 109.47235 * 90.00204 * 22 20 18 24 24 H 1.48504 * 109.46704 * 209.99645 * 22 20 18 25 25 H 1.48493 * 109.47343 * 329.99885 * 22 20 18 26 26 C 1.40833 * 119.64927 * 359.73378 * 17 16 15 27 27 C 1.36442 * 119.80731 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.46935 * 66.61908 * 1 2 3 29 29 H 1.09001 * 109.47121 * 186.61539 * 1 2 3 30 30 H 1.08998 * 109.46821 * 306.61851 * 1 2 3 31 31 H 1.09008 * 109.47196 * 240.00206 * 2 1 3 32 32 H 1.08993 * 109.47204 * 120.00474 * 2 1 3 33 33 H 1.09007 * 109.47303 * 192.38702 * 4 3 2 34 34 H 1.08998 * 109.47524 * 312.39038 * 4 3 2 35 35 H 0.96702 * 116.99991 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47238 * 167.52548 * 8 3 2 37 37 H 1.08997 * 109.47253 * 47.51992 * 8 3 2 38 38 H 0.96700 * 114.00447 * 60.00217 * 11 9 8 39 39 H 1.08998 * 109.47335 * 54.99395 * 12 9 8 40 40 H 1.09004 * 109.46816 * 294.99923 * 12 9 8 41 41 H 1.08002 * 119.90591 * 0.02946 * 15 14 13 42 42 H 1.08002 * 120.09565 * 180.25311 * 16 15 14 43 43 H 0.97004 * 119.99751 * 180.02562 * 21 20 18 44 44 H 1.07991 * 120.09873 * 179.97438 * 26 17 16 45 45 H 1.07993 * 119.91038 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7468 2.0397 1.2863 5 6 2.6670 1.4797 2.3403 6 8 3.5382 0.7021 2.0302 7 8 2.5186 1.8447 3.6234 8 6 1.4396 2.1485 -1.1129 9 6 2.0698 1.6896 -2.4294 10 1 3.1554 1.7499 -2.3531 11 8 1.6853 0.3394 -2.6963 12 6 1.5877 2.5916 -3.5673 13 8 2.2643 2.2376 -4.7751 14 6 1.9493 2.9465 -5.8882 15 6 0.9987 3.9624 -5.8164 16 6 0.6797 4.6834 -6.9300 17 6 1.3064 4.3906 -8.1567 18 6 0.9778 5.1279 -9.3155 19 1 0.6506 6.1534 -9.2283 20 6 1.0760 4.5297 -10.5764 21 7 1.2758 3.2401 -10.6750 22 14 0.9219 5.5719 -12.1190 23 1 2.2647 6.0620 -12.5215 24 1 0.3453 4.7520 -13.2147 25 1 0.0333 6.7301 -11.8472 26 6 2.2623 3.3584 -8.2219 27 6 2.5735 2.6503 -7.0979 28 1 -0.3633 0.4078 -0.9433 29 1 -0.3633 -1.0208 0.1184 30 1 -0.3633 0.6130 0.8248 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.9143 3.1126 1.1908 34 1 0.7114 1.8579 1.5743 35 1 3.1323 1.4588 4.2634 36 1 1.6367 3.2105 -0.9666 37 1 0.3633 1.9800 -1.1471 38 1 0.7303 0.2110 -2.7771 39 1 1.8021 3.6318 -3.3221 40 1 0.5136 2.4641 -3.7018 41 1 0.5162 4.1829 -4.8757 42 1 -0.0544 5.4734 -6.8718 43 1 1.3443 2.8255 -11.5493 44 1 2.7470 3.1275 -9.1589 45 1 3.3060 1.8582 -7.1460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596224894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:39 Heat of formation + Delta-G solvation = -146.883866 kcal Electronic energy + Delta-G solvation = -26775.451950 eV Core-core repulsion = 22758.562243 eV Total energy + Delta-G solvation = -4016.889707 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70181 -39.36995 -38.49184 -36.80992 -36.26695 -35.70088 -33.27946 -31.52114 -30.68281 -29.74806 -29.02241 -27.80028 -25.54218 -24.57462 -23.24168 -21.91393 -20.75661 -20.59547 -20.28630 -18.42314 -17.35394 -17.22587 -16.96522 -16.73659 -16.49082 -16.11257 -15.80999 -15.23115 -15.18285 -14.34006 -14.11487 -13.92698 -13.87669 -13.69775 -13.35252 -12.94255 -12.85574 -12.61589 -12.27497 -12.17133 -12.01192 -11.96235 -11.78806 -11.72181 -11.43085 -11.20130 -11.07769 -10.95704 -10.85546 -10.75836 -10.61214 -9.96183 -9.84079 -9.80577 -9.30965 -9.08718 -8.65569 -7.65040 -6.96980 -6.66016 -4.27625 1.91787 2.47490 2.78355 2.93980 3.09815 3.12880 3.20797 3.47085 3.96691 3.99182 4.36333 4.60375 4.64312 4.66366 4.70765 4.87349 4.93013 5.01455 5.02584 5.08078 5.18249 5.28545 5.31463 5.57414 5.58278 5.65618 5.72568 6.01410 6.03928 6.12789 6.19318 6.22066 6.56250 6.64063 6.72696 6.96978 7.11261 7.20197 7.46080 7.56076 7.61194 7.62059 7.77158 8.01628 8.21598 8.44956 8.65955 8.91966 8.98574 10.28783 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.001958 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.464282 B =14298.213617 C =14479.799510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.035 3.965 3 N -0.515 5.515 4 C 0.056 3.944 5 C 0.475 3.525 6 O -0.491 6.491 7 O -0.524 6.524 8 C 0.023 3.977 9 C 0.118 3.882 10 H 0.116 0.884 11 O -0.544 6.544 12 C 0.040 3.960 13 O -0.316 6.316 14 C -0.002 4.002 15 C -0.173 4.173 16 C -0.193 4.193 17 C 0.085 3.915 18 C -0.464 4.464 19 H 0.075 0.925 20 C 0.071 3.929 21 N -0.808 5.808 22 Si 0.911 3.089 23 H -0.269 1.269 24 H -0.279 1.279 25 H -0.264 1.264 26 C -0.125 4.125 27 C -0.123 4.123 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.050 0.950 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.117 0.883 34 H 0.080 0.920 35 H 0.410 0.590 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.367 0.633 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.279 0.721 44 H 0.128 0.872 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.257 -3.032 22.295 22.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.092 4.092 3 N -0.239 5.239 4 C -0.073 4.073 5 C 0.315 3.685 6 O -0.377 6.377 7 O -0.336 6.336 8 C -0.105 4.105 9 C 0.058 3.942 10 H 0.134 0.866 11 O -0.349 6.349 12 C -0.038 4.038 13 O -0.231 6.231 14 C -0.045 4.045 15 C -0.192 4.192 16 C -0.213 4.213 17 C 0.083 3.917 18 C -0.495 4.495 19 H 0.093 0.907 20 C -0.144 4.144 21 N -0.436 5.436 22 Si 0.736 3.264 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.144 4.144 27 C -0.142 4.142 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.269 0.731 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.214 0.786 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.090 0.910 44 H 0.146 0.854 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.966 -3.521 21.707 22.012 hybrid contribution -1.476 0.568 -0.075 1.583 sum -2.442 -2.953 21.632 21.969 Atomic orbital electron populations 1.22471 0.98469 1.02646 1.01633 1.22582 0.92318 0.88992 1.05284 1.61722 1.59260 1.02822 1.00093 1.21605 0.96927 1.00532 0.88239 1.23349 0.83876 0.78995 0.82237 1.90752 1.32897 1.32430 1.81602 1.84505 1.60496 1.69425 1.19173 1.22835 0.97874 0.98593 0.91190 1.21892 1.01525 0.81541 0.89239 0.86641 1.86653 1.27914 1.26539 1.93754 1.23080 0.96481 0.98546 0.85675 1.85898 1.63509 1.58506 1.15224 1.18659 1.02540 0.97244 0.86075 1.20394 1.01137 0.99422 0.98206 1.20615 1.03477 1.03435 0.93763 1.17618 0.89857 0.92201 0.91996 1.19445 1.40451 0.99338 0.90273 0.90693 1.25860 0.92783 0.94923 1.00849 1.69790 1.37304 1.10160 1.26311 0.86269 0.79305 0.80407 0.80407 1.19438 1.20398 1.18827 1.21059 0.98484 0.98274 0.96592 1.19883 1.01850 1.01699 0.90742 0.92089 0.91596 0.93108 0.86843 0.91010 0.86556 0.90259 0.73055 0.89384 0.92766 0.78583 0.92333 0.93054 0.88946 0.88735 0.91035 0.85408 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.09 37.16 0.34 -1.02 16 2 C 0.04 0.33 5.24 -3.82 -0.02 0.31 16 3 N -0.51 -4.83 4.25 -236.07 -1.00 -5.83 16 4 C 0.06 0.41 5.47 -4.98 -0.03 0.38 16 5 C 0.48 4.20 7.85 36.01 0.28 4.48 16 6 O -0.49 -6.20 16.00 -18.75 -0.30 -6.50 16 7 O -0.52 -3.25 13.42 -39.25 -0.53 -3.78 16 8 C 0.02 0.20 4.54 -3.82 -0.02 0.18 16 9 C 0.12 1.40 3.44 -26.73 -0.09 1.31 16 10 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 11 O -0.54 -6.80 10.36 -40.08 -0.42 -7.22 16 12 C 0.04 0.57 4.36 37.15 0.16 0.73 16 13 O -0.32 -6.35 10.09 -23.57 -0.24 -6.59 16 14 C 0.00 -0.04 6.71 -38.78 -0.26 -0.30 16 15 C -0.17 -3.82 8.96 -39.83 -0.36 -4.18 16 16 C -0.19 -4.69 9.74 -39.25 -0.38 -5.07 16 17 C 0.09 2.28 5.55 -106.81 -0.59 1.69 16 18 C -0.46 -12.32 9.05 -37.83 -0.34 -12.67 16 19 H 0.07 1.91 7.87 -52.49 -0.41 1.50 16 20 C 0.07 1.80 5.26 -17.34 -0.09 1.71 16 21 N -0.81 -21.11 10.83 55.55 0.60 -20.51 16 22 Si 0.91 18.87 29.57 -169.99 -5.03 13.84 16 23 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 25 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 26 C -0.12 -3.27 8.60 -39.25 -0.34 -3.60 16 27 C -0.12 -2.99 9.92 -39.83 -0.40 -3.39 16 28 H 0.06 0.41 5.50 -51.93 -0.29 0.12 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.32 6.26 -51.93 -0.33 0.00 16 31 H 0.11 1.25 5.71 -51.92 -0.30 0.96 16 32 H 0.07 0.74 6.59 -51.93 -0.34 0.40 16 33 H 0.12 0.65 7.71 -51.93 -0.40 0.25 16 34 H 0.08 0.45 6.13 -51.93 -0.32 0.13 16 35 H 0.41 0.99 9.10 45.56 0.41 1.41 16 36 H 0.09 0.65 7.71 -51.93 -0.40 0.25 16 37 H 0.05 0.40 5.69 -51.93 -0.30 0.10 16 38 H 0.37 3.46 8.08 45.56 0.37 3.83 16 39 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 40 H 0.05 0.70 7.63 -51.93 -0.40 0.30 16 41 H 0.09 1.73 6.27 -52.49 -0.33 1.40 16 42 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 44 H 0.13 3.44 6.22 -52.49 -0.33 3.11 16 45 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 364.48 15.07 5.49 5.49 Total: -1.00 -32.62 364.48 -8.12 -40.74 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -4.57 Total: 9.81 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -2.13 Total: -19.45 kcal Atomic # 7 Polarization: -25.94 SS G_CDS: -0.40 Total: -26.34 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -1.48 Total: -24.09 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.62 -8.12 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596224894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.142 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds