Wall clock time and date at job start Tue Mar 31 2020 13:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47154 * 2 1 4 4 C 1.46894 * 110.99666 * 69.71372 * 3 2 1 5 5 C 1.50703 * 109.47299 * 72.39299 * 4 3 2 6 6 O 1.20821 * 119.99914 * 5.89122 * 5 4 3 7 7 O 1.34227 * 119.99835 * 185.89943 * 5 4 3 8 8 C 1.46899 * 111.00298 * 305.75917 * 3 2 1 9 9 C 1.53007 * 109.47037 * 287.52095 * 8 3 2 10 10 H 1.08998 * 109.47036 * 306.50115 * 9 8 3 11 11 O 1.42897 * 109.46894 * 66.49827 * 9 8 3 12 12 C 1.52993 * 109.47070 * 186.50235 * 9 8 3 13 13 O 1.42897 * 109.47296 * 175.00187 * 12 9 8 14 14 C 1.35671 * 117.00483 * 179.97438 * 13 12 9 15 15 C 1.39317 * 119.81475 * 359.71929 * 14 13 12 16 16 C 1.36442 * 120.18579 * 179.75838 * 15 14 13 17 17 C 1.40826 * 119.80694 * 0.52045 * 16 15 14 18 18 C 1.41219 * 120.17591 * 179.71985 * 17 16 15 19 19 H 1.07996 * 120.00530 * 29.14129 * 18 17 16 20 20 C 1.39902 * 119.99653 * 209.14706 * 18 17 16 21 21 N 1.30874 * 119.99882 * 10.23541 * 20 18 17 22 22 Si 1.86802 * 119.99522 * 190.23532 * 20 18 17 23 23 H 1.48502 * 109.47235 * 90.00204 * 22 20 18 24 24 H 1.48504 * 109.46704 * 209.99645 * 22 20 18 25 25 H 1.48493 * 109.47343 * 329.99885 * 22 20 18 26 26 C 1.40833 * 119.64927 * 359.73378 * 17 16 15 27 27 C 1.36442 * 119.80731 * 0.02562 * 26 17 16 28 28 H 1.09002 * 109.46935 * 66.61908 * 1 2 3 29 29 H 1.09001 * 109.47121 * 186.61539 * 1 2 3 30 30 H 1.08998 * 109.46821 * 306.61851 * 1 2 3 31 31 H 1.09008 * 109.47196 * 240.00206 * 2 1 3 32 32 H 1.08993 * 109.47204 * 120.00474 * 2 1 3 33 33 H 1.09007 * 109.47303 * 192.38702 * 4 3 2 34 34 H 1.08998 * 109.47524 * 312.39038 * 4 3 2 35 35 H 0.96702 * 116.99991 * 179.97438 * 7 5 4 36 36 H 1.09000 * 109.47238 * 167.52548 * 8 3 2 37 37 H 1.08997 * 109.47253 * 47.51992 * 8 3 2 38 38 H 0.96700 * 114.00447 * 60.00217 * 11 9 8 39 39 H 1.08998 * 109.47335 * 54.99395 * 12 9 8 40 40 H 1.09004 * 109.46816 * 294.99923 * 12 9 8 41 41 H 1.08002 * 119.90591 * 0.02946 * 15 14 13 42 42 H 1.08002 * 120.09565 * 180.25311 * 16 15 14 43 43 H 0.97004 * 119.99751 * 180.02562 * 21 20 18 44 44 H 1.07991 * 120.09873 * 179.97438 * 26 17 16 45 45 H 1.07993 * 119.91038 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7468 2.0397 1.2863 5 6 2.6670 1.4797 2.3403 6 8 3.5382 0.7021 2.0302 7 8 2.5186 1.8447 3.6234 8 6 1.4396 2.1485 -1.1129 9 6 2.0698 1.6896 -2.4294 10 1 3.1554 1.7499 -2.3531 11 8 1.6853 0.3394 -2.6963 12 6 1.5877 2.5916 -3.5673 13 8 2.2643 2.2376 -4.7751 14 6 1.9493 2.9465 -5.8882 15 6 0.9987 3.9624 -5.8164 16 6 0.6797 4.6834 -6.9300 17 6 1.3064 4.3906 -8.1567 18 6 0.9778 5.1279 -9.3155 19 1 0.6506 6.1534 -9.2283 20 6 1.0760 4.5297 -10.5764 21 7 1.2758 3.2401 -10.6750 22 14 0.9219 5.5719 -12.1190 23 1 2.2647 6.0620 -12.5215 24 1 0.3453 4.7520 -13.2147 25 1 0.0333 6.7301 -11.8472 26 6 2.2623 3.3584 -8.2219 27 6 2.5735 2.6503 -7.0979 28 1 -0.3633 0.4078 -0.9433 29 1 -0.3633 -1.0208 0.1184 30 1 -0.3633 0.6130 0.8248 31 1 1.8934 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.9143 3.1126 1.1908 34 1 0.7114 1.8579 1.5743 35 1 3.1323 1.4588 4.2634 36 1 1.6367 3.2105 -0.9666 37 1 0.3633 1.9800 -1.1471 38 1 0.7303 0.2110 -2.7771 39 1 1.8021 3.6318 -3.3221 40 1 0.5136 2.4641 -3.7018 41 1 0.5162 4.1829 -4.8757 42 1 -0.0544 5.4734 -6.8718 43 1 1.3443 2.8255 -11.5493 44 1 2.7470 3.1275 -9.1589 45 1 3.3060 1.8582 -7.1460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596224894.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:38 Heat of formation + Delta-G solvation = -170.940899 kcal Electronic energy + Delta-G solvation = -26776.495141 eV Core-core repulsion = 22758.562243 eV Total energy + Delta-G solvation = -4017.932898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.37369 -40.66469 -39.64202 -38.17904 -37.17099 -36.65992 -35.12751 -32.45751 -31.63803 -31.25474 -30.82794 -28.71218 -26.81078 -25.94921 -24.14621 -23.00315 -22.46498 -22.07472 -21.03549 -19.22904 -19.08189 -18.61433 -17.76482 -17.64305 -17.37900 -17.06219 -16.93426 -16.58952 -16.11540 -15.77382 -15.65986 -15.13731 -14.96911 -14.51370 -14.46496 -14.08908 -14.03246 -13.90396 -13.60339 -13.43424 -13.16229 -13.06844 -12.80138 -12.69897 -12.63176 -12.54882 -12.41864 -12.36429 -11.97618 -11.69491 -11.65014 -11.55710 -11.52978 -11.15561 -10.92340 -10.73400 -9.54418 -9.27787 -8.83919 -8.52814 -6.23908 0.96241 1.04524 1.27663 1.40780 1.52262 1.54488 1.91069 2.24821 2.50962 2.77999 3.08240 3.48713 3.70582 3.90931 3.96454 4.03033 4.14281 4.18920 4.26343 4.31330 4.38437 4.39695 4.42463 4.46327 4.50340 4.61274 4.64663 4.88256 4.97790 5.04844 5.09764 5.20282 5.23538 5.31583 5.43761 5.61097 5.66821 5.67484 5.89131 5.95231 5.99719 6.08595 6.28867 6.59278 6.80763 6.85906 6.98453 7.07184 7.12142 8.43711 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.001958 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.464282 B =14298.213617 C =14479.799510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.041 3.959 3 N -0.537 5.537 4 C 0.055 3.945 5 C 0.479 3.521 6 O -0.539 6.539 7 O -0.516 6.516 8 C 0.033 3.967 9 C 0.125 3.875 10 H 0.091 0.909 11 O -0.561 6.561 12 C 0.031 3.969 13 O -0.332 6.332 14 C 0.010 3.990 15 C -0.168 4.168 16 C -0.199 4.199 17 C 0.050 3.950 18 C -0.498 4.498 19 H 0.076 0.924 20 C 0.027 3.973 21 N -0.843 5.843 22 Si 0.985 3.015 23 H -0.264 1.264 24 H -0.271 1.271 25 H -0.258 1.258 26 C -0.144 4.144 27 C -0.141 4.141 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.055 0.945 33 H 0.139 0.861 34 H 0.102 0.898 35 H 0.426 0.574 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.380 0.620 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.134 0.866 42 H 0.109 0.891 43 H 0.284 0.716 44 H 0.109 0.891 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 -1.755 24.057 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.087 4.087 3 N -0.261 5.261 4 C -0.073 4.073 5 C 0.321 3.679 6 O -0.428 6.428 7 O -0.330 6.330 8 C -0.094 4.094 9 C 0.066 3.934 10 H 0.109 0.891 11 O -0.368 6.368 12 C -0.046 4.046 13 O -0.248 6.248 14 C -0.034 4.034 15 C -0.186 4.186 16 C -0.219 4.219 17 C 0.048 3.952 18 C -0.529 4.529 19 H 0.094 0.906 20 C -0.185 4.185 21 N -0.471 5.471 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.182 1.182 26 C -0.164 4.164 27 C -0.160 4.160 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.157 0.843 34 H 0.120 0.880 35 H 0.288 0.712 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.229 0.771 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.152 0.848 42 H 0.127 0.873 43 H 0.095 0.905 44 H 0.127 0.873 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.680 -2.240 23.527 23.785 hybrid contribution -0.914 0.081 -0.360 0.986 sum -3.594 -2.159 23.168 23.544 Atomic orbital electron populations 1.22397 0.96449 1.03166 1.02466 1.22401 0.93891 0.89021 1.03368 1.61564 1.60270 1.02956 1.01360 1.21742 0.97552 1.01305 0.86684 1.23729 0.83174 0.77931 0.83047 1.90743 1.35003 1.34680 1.82405 1.84472 1.60809 1.69049 1.18645 1.22725 0.98531 0.99266 0.88925 1.21793 1.00490 0.80995 0.90167 0.89054 1.86640 1.29306 1.26948 1.93937 1.23499 0.97110 1.00109 0.83840 1.85895 1.64476 1.58330 1.16122 1.18715 1.01365 0.96768 0.86513 1.20725 1.00464 0.98179 0.99246 1.20883 1.03439 1.03929 0.93653 1.17978 0.90796 0.93051 0.93394 1.19699 1.42188 0.99639 0.91370 0.90598 1.26738 0.91935 0.96009 1.03799 1.69871 1.38104 1.11730 1.27367 0.85155 0.79429 0.78645 0.76139 1.18918 1.19597 1.18157 1.20949 0.99366 0.99464 0.96608 1.20035 1.02581 1.01974 0.91416 0.91385 0.91451 0.91848 0.89096 0.92607 0.84332 0.88036 0.71213 0.87455 0.90656 0.77063 0.90739 0.91365 0.84791 0.87338 0.90513 0.87297 0.87804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 9.09 71.98 0.65 -1.49 16 2 C 0.04 0.71 5.24 86.30 0.45 1.16 16 3 N -0.54 -8.96 4.25 -900.78 -3.83 -12.78 16 4 C 0.06 0.64 5.47 85.56 0.47 1.11 16 5 C 0.48 7.68 7.85 71.24 0.56 8.24 16 6 O -0.54 -13.51 16.00 21.98 0.35 -13.15 16 7 O -0.52 -5.30 13.42 -51.39 -0.69 -5.99 16 8 C 0.03 0.46 4.54 86.31 0.39 0.85 16 9 C 0.13 2.75 3.44 30.59 0.11 2.86 16 10 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 11 O -0.56 -13.38 10.36 -144.34 -1.49 -14.88 16 12 C 0.03 0.80 4.36 71.98 0.31 1.11 16 13 O -0.33 -12.89 10.09 -85.24 -0.86 -13.75 16 14 C 0.01 0.46 6.71 22.79 0.15 0.62 16 15 C -0.17 -7.05 8.96 22.11 0.20 -6.85 16 16 C -0.20 -9.54 9.74 22.48 0.22 -9.32 16 17 C 0.05 2.71 5.55 -21.28 -0.12 2.59 16 18 C -0.50 -27.03 9.05 23.41 0.21 -26.82 16 19 H 0.08 3.93 7.87 -2.91 -0.02 3.91 16 20 C 0.03 1.40 5.26 85.24 0.45 1.84 16 21 N -0.84 -45.30 10.83 21.82 0.24 -45.06 16 22 Si 0.99 38.96 29.57 68.60 2.03 40.99 16 23 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 24 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 C -0.14 -7.83 8.60 22.49 0.19 -7.64 16 27 C -0.14 -7.01 9.92 22.11 0.22 -6.79 16 28 H 0.07 0.69 5.50 -2.39 -0.01 0.67 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.57 6.26 -2.39 -0.01 0.56 16 31 H 0.09 2.00 5.71 -2.38 -0.01 1.98 16 32 H 0.06 1.14 6.59 -2.39 -0.02 1.13 16 33 H 0.14 0.99 7.71 -2.38 -0.02 0.97 16 34 H 0.10 0.75 6.13 -2.39 -0.01 0.73 16 35 H 0.43 1.33 9.10 -74.06 -0.67 0.66 16 36 H 0.11 1.11 7.71 -2.39 -0.02 1.09 16 37 H 0.08 0.76 5.69 -2.39 -0.01 0.75 16 38 H 0.38 6.45 8.08 -74.06 -0.60 5.85 16 39 H 0.07 1.73 7.66 -2.39 -0.02 1.72 16 40 H 0.07 1.58 7.63 -2.38 -0.02 1.56 16 41 H 0.13 4.44 6.27 -2.91 -0.02 4.42 16 42 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 44 H 0.11 6.20 6.22 -2.92 -0.02 6.18 16 45 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -73.18 364.48 -0.01 -73.19 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: -0.23 Total: 29.96 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 4.47 Total: -38.53 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -3.59 Total: -57.85 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -2.69 Total: -47.77 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -73.18 -0.01 -73.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596224894.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.752 kcal (2) G-P(sol) polarization free energy of solvation -73.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds