Wall clock time and date at job start Tue Mar 31 2020 13:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47287 * 2 1 4 4 C 1.46898 * 111.00045 * 299.83741 * 3 2 1 5 5 C 1.50706 * 109.46962 * 287.13997 * 4 3 2 6 6 O 1.20826 * 119.99941 * 0.39795 * 5 4 3 7 7 O 1.34229 * 119.99683 * 180.40162 * 5 4 3 8 8 C 1.46901 * 110.99678 * 63.79087 * 3 2 1 9 9 C 1.52998 * 109.47309 * 77.01335 * 8 3 2 10 10 H 1.08998 * 109.47343 * 53.68531 * 9 8 3 11 11 O 1.42901 * 109.46787 * 293.69212 * 9 8 3 12 12 C 1.52993 * 109.47471 * 173.69379 * 9 8 3 13 13 O 1.42901 * 109.47585 * 184.99604 * 12 9 8 14 14 C 1.35669 * 117.00325 * 179.97438 * 13 12 9 15 15 C 1.39313 * 119.81730 * 179.97438 * 14 13 12 16 16 C 1.36439 * 120.18367 * 179.73045 * 15 14 13 17 17 C 1.40837 * 119.81232 * 0.27587 * 16 15 14 18 18 C 1.41217 * 120.17963 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00038 * 346.35205 * 18 17 16 20 20 C 1.39885 * 120.00215 * 166.35502 * 18 17 16 21 21 N 1.30887 * 119.99985 * 330.89200 * 20 18 17 22 22 Si 1.86802 * 120.00132 * 150.88837 * 20 18 17 23 23 H 1.48498 * 109.46802 * 94.99945 * 22 20 18 24 24 H 1.48502 * 109.47115 * 214.99694 * 22 20 18 25 25 H 1.48500 * 109.47156 * 335.00072 * 22 20 18 26 26 C 1.40834 * 119.64094 * 0.02562 * 17 16 15 27 27 C 1.36433 * 119.81067 * 359.97438 * 26 17 16 28 28 H 1.09010 * 109.47311 * 64.80550 * 1 2 3 29 29 H 1.08993 * 109.47737 * 184.80417 * 1 2 3 30 30 H 1.09003 * 109.47209 * 304.80905 * 1 2 3 31 31 H 1.09002 * 109.47224 * 239.99910 * 2 1 3 32 32 H 1.09004 * 109.46683 * 119.99885 * 2 1 3 33 33 H 1.09001 * 109.47034 * 47.13240 * 4 3 2 34 34 H 1.08990 * 109.47083 * 167.13758 * 4 3 2 35 35 H 0.96706 * 116.99771 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.47423 * 317.00877 * 8 3 2 37 37 H 1.08999 * 109.46691 * 197.00612 * 8 3 2 38 38 H 0.96706 * 114.00146 * 299.99859 * 11 9 8 39 39 H 1.09004 * 109.47273 * 64.99432 * 12 9 8 40 40 H 1.09003 * 109.46824 * 304.99771 * 12 9 8 41 41 H 1.07994 * 119.90591 * 0.02562 * 15 14 13 42 42 H 1.08000 * 120.09340 * 180.30250 * 16 15 14 43 43 H 0.96996 * 120.00021 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.09503 * 180.02562 * 26 17 16 45 45 H 1.08005 * 119.90767 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5519 2.1088 -1.1896 5 6 2.3016 1.6200 -2.4021 6 8 3.1345 0.7521 -2.2881 7 8 2.0441 2.1488 -3.6087 8 6 1.6241 2.0832 1.2305 9 6 2.5264 1.6370 2.3827 10 1 3.5704 1.7734 2.1005 11 8 2.2868 0.2575 2.6685 12 6 2.2200 2.4759 3.6248 13 8 3.1400 2.1401 4.6654 14 6 3.0049 2.7992 5.8435 15 6 3.8704 2.5173 6.8982 16 6 3.7447 3.1797 8.0844 17 6 2.7329 4.1464 8.2428 18 6 2.5962 4.8369 9.4670 19 1 3.1102 4.4815 10.3478 20 6 1.7949 5.9813 9.5389 21 7 1.6388 6.7383 8.4826 22 14 0.9476 6.4291 11.1424 23 1 1.7855 7.4004 11.8904 24 1 -0.3748 7.0382 10.8502 25 1 0.7587 5.2047 11.9612 26 6 1.8582 4.4208 7.1737 27 6 1.9974 3.7496 5.9941 28 1 -0.3634 0.4375 -0.9300 29 1 -0.3634 -1.0240 0.0861 30 1 -0.3634 0.5866 0.8438 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 0.4851 1.9318 -1.3264 34 1 1.7293 3.1761 -1.0586 35 1 2.5500 1.8028 -4.3567 36 1 0.5874 1.8435 1.4670 37 1 1.7245 3.1589 1.0861 38 1 1.3758 0.0619 2.9273 39 1 1.2028 2.2717 3.9594 40 1 2.3169 3.5340 3.3816 41 1 4.6459 1.7760 6.7749 42 1 4.4195 2.9635 8.8994 43 1 1.0829 7.5316 8.5324 44 1 1.0799 5.1610 7.2870 45 1 1.3277 3.9590 5.1730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596224895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:42 Heat of formation + Delta-G solvation = -145.970183 kcal Electronic energy + Delta-G solvation = -26814.156869 eV Core-core repulsion = 22797.306782 eV Total energy + Delta-G solvation = -4016.850087 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.67746 -39.28696 -38.42368 -36.82002 -36.23644 -35.70955 -33.44299 -31.50284 -30.56819 -29.61889 -29.23208 -27.82778 -25.48385 -24.54320 -23.15102 -21.93174 -20.95558 -20.47811 -20.22501 -18.39324 -17.40260 -17.12802 -16.94087 -16.68826 -16.50487 -16.10411 -15.75135 -15.22954 -15.19243 -14.40501 -14.05470 -13.94970 -13.88980 -13.69162 -13.34127 -12.91550 -12.80523 -12.55666 -12.44179 -12.09322 -12.01673 -11.89062 -11.87195 -11.73712 -11.39190 -11.14790 -11.05539 -11.03950 -10.86990 -10.75068 -10.50593 -10.05171 -9.86956 -9.78953 -9.40014 -8.87883 -8.63168 -7.64702 -7.13897 -6.85225 -4.22744 1.94268 2.50235 2.74366 2.97435 3.04298 3.07786 3.23560 3.50086 3.89114 4.04609 4.39110 4.51263 4.62177 4.66235 4.75758 4.89922 4.94816 5.02262 5.06239 5.10115 5.21566 5.31221 5.34433 5.62878 5.65433 5.68787 5.76173 6.02668 6.10735 6.13590 6.22927 6.30583 6.58543 6.67974 6.75029 6.90880 7.01571 7.27326 7.42554 7.54529 7.63299 7.64121 7.93328 7.98940 8.15490 8.43583 8.64128 8.86227 8.99994 10.06111 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.024783 B = 0.002097 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.535806 B =13350.292191 C =13736.863944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.029 3.971 3 N -0.514 5.514 4 C 0.054 3.946 5 C 0.476 3.524 6 O -0.493 6.493 7 O -0.523 6.523 8 C 0.022 3.978 9 C 0.119 3.881 10 H 0.115 0.885 11 O -0.544 6.544 12 C 0.040 3.960 13 O -0.318 6.318 14 C -0.022 4.022 15 C -0.105 4.105 16 C -0.206 4.206 17 C 0.087 3.913 18 C -0.461 4.461 19 H 0.079 0.921 20 C 0.081 3.919 21 N -0.780 5.780 22 Si 0.900 3.100 23 H -0.270 1.270 24 H -0.275 1.275 25 H -0.259 1.259 26 C -0.155 4.155 27 C -0.168 4.168 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.410 0.590 36 H 0.054 0.946 37 H 0.088 0.912 38 H 0.367 0.633 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.281 0.719 44 H 0.123 0.877 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.943 -6.251 -18.891 20.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C -0.098 4.098 3 N -0.238 5.238 4 C -0.075 4.075 5 C 0.317 3.683 6 O -0.379 6.379 7 O -0.336 6.336 8 C -0.105 4.105 9 C 0.059 3.941 10 H 0.133 0.867 11 O -0.348 6.348 12 C -0.037 4.037 13 O -0.233 6.233 14 C -0.065 4.065 15 C -0.124 4.124 16 C -0.225 4.225 17 C 0.084 3.916 18 C -0.489 4.489 19 H 0.097 0.903 20 C -0.138 4.138 21 N -0.405 5.405 22 Si 0.724 3.276 23 H -0.195 1.195 24 H -0.200 1.200 25 H -0.182 1.182 26 C -0.174 4.174 27 C -0.187 4.187 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.134 0.866 35 H 0.269 0.731 36 H 0.072 0.928 37 H 0.106 0.894 38 H 0.214 0.786 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.092 0.908 44 H 0.141 0.859 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.727 -6.314 -18.822 20.408 hybrid contribution -1.810 0.554 0.201 1.904 sum -6.537 -5.760 -18.621 20.559 Atomic orbital electron populations 1.22496 0.98695 1.02876 1.01507 1.22680 0.92106 0.89129 1.05868 1.61683 1.59777 1.02683 0.99692 1.21650 0.97952 1.00475 0.87445 1.23358 0.81305 0.79564 0.84102 1.90737 1.31827 1.29568 1.85737 1.84508 1.65384 1.65068 1.18598 1.22838 0.98237 0.99351 0.90095 1.21899 1.01177 0.81034 0.89985 0.86719 1.86644 1.33823 1.24719 1.89638 1.23063 0.93417 0.98896 0.88329 1.85860 1.54247 1.62648 1.20572 1.18535 1.01858 1.00127 0.85962 1.19603 0.99046 1.01425 0.92306 1.20489 1.01710 1.03783 0.96558 1.17575 0.89850 0.91195 0.92936 1.19482 1.25330 1.07829 0.96306 0.90269 1.25943 0.94977 0.94970 0.97959 1.69920 1.29099 1.10276 1.31200 0.86433 0.79205 0.79493 0.82461 1.19525 1.19989 1.18235 1.20995 1.01397 1.02101 0.92938 1.20561 0.99415 0.99839 0.98839 0.93070 0.91514 0.92138 0.90185 0.86953 0.89918 0.86645 0.73072 0.92762 0.89377 0.78591 0.93129 0.92355 0.88545 0.88325 0.90823 0.85928 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 9.28 37.16 0.34 -1.07 16 2 C 0.03 0.28 5.58 -3.82 -0.02 0.26 16 3 N -0.51 -5.00 4.25 -236.07 -1.00 -6.01 16 4 C 0.05 0.41 5.42 -4.97 -0.03 0.38 16 5 C 0.48 4.36 8.08 36.01 0.29 4.66 16 6 O -0.49 -6.32 15.62 -18.75 -0.29 -6.61 16 7 O -0.52 -3.43 13.42 -39.25 -0.53 -3.96 16 8 C 0.02 0.20 4.68 -3.82 -0.02 0.19 16 9 C 0.12 1.47 3.47 -26.74 -0.09 1.37 16 10 H 0.12 1.63 8.14 -51.93 -0.42 1.20 16 11 O -0.54 -6.91 10.47 -40.08 -0.42 -7.33 16 12 C 0.04 0.61 4.36 37.15 0.16 0.77 16 13 O -0.32 -6.50 10.09 -23.56 -0.24 -6.73 16 14 C -0.02 -0.51 6.71 -38.78 -0.26 -0.77 16 15 C -0.11 -2.49 9.92 -39.83 -0.40 -2.89 16 16 C -0.21 -5.12 9.74 -39.25 -0.38 -5.50 16 17 C 0.09 2.32 5.66 -106.80 -0.60 1.71 16 18 C -0.46 -12.14 9.00 -37.83 -0.34 -12.48 16 19 H 0.08 2.01 7.99 -52.49 -0.42 1.59 16 20 C 0.08 2.00 4.99 -17.34 -0.09 1.91 16 21 N -0.78 -19.69 10.99 55.54 0.61 -19.08 16 22 Si 0.90 18.20 29.65 -169.99 -5.04 13.16 16 23 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 C -0.15 -4.00 8.78 -39.25 -0.34 -4.34 16 27 C -0.17 -3.90 8.96 -39.83 -0.36 -4.26 16 28 H 0.05 0.34 6.40 -51.92 -0.33 0.01 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.41 6.00 -51.93 -0.31 0.10 16 31 H 0.08 0.88 6.48 -51.93 -0.34 0.54 16 32 H 0.11 1.20 5.34 -51.93 -0.28 0.92 16 33 H 0.08 0.51 5.82 -51.93 -0.30 0.20 16 34 H 0.12 0.70 7.65 -51.93 -0.40 0.31 16 35 H 0.41 1.12 9.10 45.56 0.41 1.53 16 36 H 0.05 0.42 5.72 -51.93 -0.30 0.12 16 37 H 0.09 0.70 7.61 -51.93 -0.40 0.30 16 38 H 0.37 3.45 9.04 45.56 0.41 3.86 16 39 H 0.05 0.72 7.64 -51.93 -0.40 0.32 16 40 H 0.06 0.86 7.66 -51.93 -0.40 0.46 16 41 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 43 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 44 H 0.12 3.22 5.82 -52.49 -0.31 2.92 16 45 H 0.09 1.85 6.27 -52.48 -0.33 1.52 16 LS Contribution 365.68 15.07 5.51 5.51 Total: -1.00 -32.40 365.68 -8.03 -40.43 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -4.50 Total: 10.68 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.13 Total: -20.05 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: -0.39 Total: -25.09 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -1.48 Total: -24.63 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.04 Total: 13.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.40 -8.03 -40.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596224895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.540 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds