Wall clock time and date at job start Tue Mar 31 2020 13:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46902 * 109.47287 * 2 1 4 4 C 1.46898 * 111.00045 * 299.83741 * 3 2 1 5 5 C 1.50706 * 109.46962 * 287.13997 * 4 3 2 6 6 O 1.20826 * 119.99941 * 0.39795 * 5 4 3 7 7 O 1.34229 * 119.99683 * 180.40162 * 5 4 3 8 8 C 1.46901 * 110.99678 * 63.79087 * 3 2 1 9 9 C 1.52998 * 109.47309 * 77.01335 * 8 3 2 10 10 H 1.08998 * 109.47343 * 53.68531 * 9 8 3 11 11 O 1.42901 * 109.46787 * 293.69212 * 9 8 3 12 12 C 1.52993 * 109.47471 * 173.69379 * 9 8 3 13 13 O 1.42901 * 109.47585 * 184.99604 * 12 9 8 14 14 C 1.35669 * 117.00325 * 179.97438 * 13 12 9 15 15 C 1.39313 * 119.81730 * 179.97438 * 14 13 12 16 16 C 1.36439 * 120.18367 * 179.73045 * 15 14 13 17 17 C 1.40837 * 119.81232 * 0.27587 * 16 15 14 18 18 C 1.41217 * 120.17963 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00038 * 346.35205 * 18 17 16 20 20 C 1.39885 * 120.00215 * 166.35502 * 18 17 16 21 21 N 1.30887 * 119.99985 * 330.89200 * 20 18 17 22 22 Si 1.86802 * 120.00132 * 150.88837 * 20 18 17 23 23 H 1.48498 * 109.46802 * 94.99945 * 22 20 18 24 24 H 1.48502 * 109.47115 * 214.99694 * 22 20 18 25 25 H 1.48500 * 109.47156 * 335.00072 * 22 20 18 26 26 C 1.40834 * 119.64094 * 0.02562 * 17 16 15 27 27 C 1.36433 * 119.81067 * 359.97438 * 26 17 16 28 28 H 1.09010 * 109.47311 * 64.80550 * 1 2 3 29 29 H 1.08993 * 109.47737 * 184.80417 * 1 2 3 30 30 H 1.09003 * 109.47209 * 304.80905 * 1 2 3 31 31 H 1.09002 * 109.47224 * 239.99910 * 2 1 3 32 32 H 1.09004 * 109.46683 * 119.99885 * 2 1 3 33 33 H 1.09001 * 109.47034 * 47.13240 * 4 3 2 34 34 H 1.08990 * 109.47083 * 167.13758 * 4 3 2 35 35 H 0.96706 * 116.99771 * 180.02562 * 7 5 4 36 36 H 1.09000 * 109.47423 * 317.00877 * 8 3 2 37 37 H 1.08999 * 109.46691 * 197.00612 * 8 3 2 38 38 H 0.96706 * 114.00146 * 299.99859 * 11 9 8 39 39 H 1.09004 * 109.47273 * 64.99432 * 12 9 8 40 40 H 1.09003 * 109.46824 * 304.99771 * 12 9 8 41 41 H 1.07994 * 119.90591 * 0.02562 * 15 14 13 42 42 H 1.08000 * 120.09340 * 180.30250 * 16 15 14 43 43 H 0.96996 * 120.00021 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.09503 * 180.02562 * 26 17 16 45 45 H 1.08005 * 119.90767 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5519 2.1088 -1.1896 5 6 2.3016 1.6200 -2.4021 6 8 3.1345 0.7521 -2.2881 7 8 2.0441 2.1488 -3.6087 8 6 1.6241 2.0832 1.2305 9 6 2.5264 1.6370 2.3827 10 1 3.5704 1.7734 2.1005 11 8 2.2868 0.2575 2.6685 12 6 2.2200 2.4759 3.6248 13 8 3.1400 2.1401 4.6654 14 6 3.0049 2.7992 5.8435 15 6 3.8704 2.5173 6.8982 16 6 3.7447 3.1797 8.0844 17 6 2.7329 4.1464 8.2428 18 6 2.5962 4.8369 9.4670 19 1 3.1102 4.4815 10.3478 20 6 1.7949 5.9813 9.5389 21 7 1.6388 6.7383 8.4826 22 14 0.9476 6.4291 11.1424 23 1 1.7855 7.4004 11.8904 24 1 -0.3748 7.0382 10.8502 25 1 0.7587 5.2047 11.9612 26 6 1.8582 4.4208 7.1737 27 6 1.9974 3.7496 5.9941 28 1 -0.3634 0.4375 -0.9300 29 1 -0.3634 -1.0240 0.0861 30 1 -0.3634 0.5866 0.8438 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 0.4851 1.9318 -1.3264 34 1 1.7293 3.1761 -1.0586 35 1 2.5500 1.8028 -4.3567 36 1 0.5874 1.8435 1.4670 37 1 1.7245 3.1589 1.0861 38 1 1.3758 0.0619 2.9273 39 1 1.2028 2.2717 3.9594 40 1 2.3169 3.5340 3.3816 41 1 4.6459 1.7760 6.7749 42 1 4.4195 2.9635 8.8994 43 1 1.0829 7.5316 8.5324 44 1 1.0799 5.1610 7.2870 45 1 1.3277 3.9590 5.1730 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596224895.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:41 Heat of formation + Delta-G solvation = -169.733959 kcal Electronic energy + Delta-G solvation = -26815.187344 eV Core-core repulsion = 22797.306782 eV Total energy + Delta-G solvation = -4017.880561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37586 -40.61754 -39.59079 -38.17893 -37.19548 -36.68858 -35.27187 -32.42279 -31.50616 -31.35105 -30.88237 -28.78763 -26.82670 -25.88600 -24.05156 -23.13735 -22.53806 -21.94651 -21.08785 -19.29643 -19.07786 -18.55445 -17.78676 -17.71495 -17.36251 -17.10197 -16.82314 -16.52754 -16.15002 -15.83073 -15.65748 -15.12466 -15.02954 -14.60971 -14.41839 -14.18267 -14.09863 -13.84248 -13.63443 -13.43615 -13.12322 -13.07403 -12.78958 -12.71882 -12.65943 -12.55861 -12.43190 -12.26176 -11.93588 -11.79283 -11.71364 -11.61094 -11.53946 -11.21892 -10.73027 -10.69509 -9.54538 -9.28949 -9.01181 -8.68772 -6.16686 0.96113 1.06694 1.27073 1.39537 1.48917 1.59085 1.90502 2.21183 2.52756 2.65132 3.09497 3.48192 3.73064 3.91311 3.95789 4.03137 4.12709 4.18365 4.27202 4.32876 4.37237 4.42645 4.43236 4.44764 4.51931 4.56482 4.64447 4.91507 5.00817 5.02458 5.08464 5.14961 5.18919 5.39103 5.41961 5.55643 5.66563 5.67573 5.94210 6.00573 6.01854 6.06882 6.26096 6.56195 6.79937 6.84993 6.93543 7.06602 7.14970 8.25587 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.024783 B = 0.002097 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.535806 B =13350.292191 C =13736.863944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.034 3.966 3 N -0.536 5.536 4 C 0.053 3.947 5 C 0.480 3.520 6 O -0.539 6.539 7 O -0.516 6.516 8 C 0.032 3.968 9 C 0.128 3.872 10 H 0.092 0.908 11 O -0.560 6.560 12 C 0.033 3.967 13 O -0.332 6.332 14 C -0.014 4.014 15 C -0.118 4.118 16 C -0.219 4.219 17 C 0.055 3.945 18 C -0.499 4.499 19 H 0.075 0.925 20 C 0.042 3.958 21 N -0.809 5.809 22 Si 0.976 3.024 23 H -0.262 1.262 24 H -0.263 1.263 25 H -0.261 1.261 26 C -0.177 4.177 27 C -0.166 4.166 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.426 0.574 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.382 0.618 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.291 0.709 44 H 0.113 0.887 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.820 -5.622 -19.798 22.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.093 4.093 3 N -0.260 5.260 4 C -0.076 4.076 5 C 0.322 3.678 6 O -0.428 6.428 7 O -0.330 6.330 8 C -0.095 4.095 9 C 0.069 3.931 10 H 0.110 0.890 11 O -0.367 6.367 12 C -0.044 4.044 13 O -0.248 6.248 14 C -0.057 4.057 15 C -0.137 4.137 16 C -0.238 4.238 17 C 0.052 3.948 18 C -0.527 4.527 19 H 0.094 0.906 20 C -0.175 4.175 21 N -0.434 5.434 22 Si 0.796 3.204 23 H -0.186 1.186 24 H -0.187 1.187 25 H -0.184 1.184 26 C -0.196 4.196 27 C -0.185 4.185 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.153 0.847 35 H 0.288 0.712 36 H 0.093 0.907 37 H 0.123 0.877 38 H 0.231 0.769 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.131 0.869 42 H 0.123 0.877 43 H 0.102 0.898 44 H 0.131 0.869 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.616 -5.682 -19.777 21.614 hybrid contribution -1.174 0.295 0.280 1.242 sum -7.790 -5.387 -19.497 21.676 Atomic orbital electron populations 1.22412 0.96648 1.03411 1.02271 1.22519 0.93712 0.89017 1.04099 1.61524 1.60923 1.02948 1.00633 1.21783 0.98739 1.01104 0.85938 1.23703 0.80447 0.78617 0.85019 1.90730 1.33931 1.31661 1.86454 1.84474 1.65368 1.64565 1.18560 1.22716 0.98202 1.00037 0.88538 1.21766 1.00872 0.80611 0.89895 0.89046 1.86622 1.35329 1.24882 1.89836 1.23441 0.93175 1.00034 0.87722 1.85858 1.55993 1.62401 1.20500 1.18640 1.00896 0.99371 0.86825 1.19871 0.99779 1.01720 0.92315 1.20663 1.01748 1.03955 0.97467 1.17944 0.90825 0.92246 0.93741 1.19714 1.27457 1.09230 0.96317 0.90639 1.26769 0.94804 0.94239 1.01658 1.69930 1.29438 1.10792 1.33197 0.85295 0.78315 0.79072 0.77680 1.18625 1.18695 1.18448 1.21016 1.01645 1.02998 0.93975 1.20794 0.99767 0.99116 0.98828 0.92227 0.91199 0.91256 0.92169 0.88483 0.87757 0.84661 0.71197 0.90703 0.87730 0.76908 0.91614 0.91579 0.86918 0.87667 0.89779 0.86918 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.25 9.28 71.98 0.67 -1.58 16 2 C 0.03 0.61 5.58 86.30 0.48 1.09 16 3 N -0.54 -9.46 4.25 -900.80 -3.83 -13.29 16 4 C 0.05 0.67 5.42 85.56 0.46 1.13 16 5 C 0.48 8.11 8.08 71.24 0.58 8.69 16 6 O -0.54 -13.73 15.62 21.96 0.34 -13.39 16 7 O -0.52 -5.75 13.42 -51.41 -0.69 -6.44 16 8 C 0.03 0.50 4.68 86.30 0.40 0.90 16 9 C 0.13 2.97 3.47 30.59 0.11 3.08 16 10 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 11 O -0.56 -13.59 10.47 -144.34 -1.51 -15.10 16 12 C 0.03 0.92 4.36 71.98 0.31 1.23 16 13 O -0.33 -13.18 10.09 -85.22 -0.86 -14.03 16 14 C -0.01 -0.62 6.71 22.79 0.15 -0.47 16 15 C -0.12 -5.61 9.92 22.11 0.22 -5.39 16 16 C -0.22 -11.11 9.74 22.49 0.22 -10.90 16 17 C 0.05 2.99 5.66 -21.28 -0.12 2.87 16 18 C -0.50 -26.92 9.00 23.40 0.21 -26.71 16 19 H 0.08 3.95 7.99 -2.91 -0.02 3.93 16 20 C 0.04 2.10 4.99 85.23 0.43 2.53 16 21 N -0.81 -41.02 10.99 21.82 0.24 -40.78 16 22 Si 0.98 37.16 29.65 68.60 2.03 39.19 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 24 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 26 C -0.18 -9.24 8.78 22.48 0.20 -9.04 16 27 C -0.17 -7.62 8.96 22.11 0.20 -7.42 16 28 H 0.06 0.61 6.40 -2.38 -0.02 0.60 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.71 6.00 -2.39 -0.01 0.69 16 31 H 0.06 1.32 6.48 -2.39 -0.02 1.30 16 32 H 0.10 2.02 5.34 -2.39 -0.01 2.01 16 33 H 0.10 0.90 5.82 -2.39 -0.01 0.89 16 34 H 0.14 1.19 7.65 -2.39 -0.02 1.17 16 35 H 0.43 1.63 9.10 -74.05 -0.67 0.96 16 36 H 0.08 0.86 5.72 -2.39 -0.01 0.85 16 37 H 0.10 1.28 7.61 -2.39 -0.02 1.26 16 38 H 0.38 6.48 9.04 -74.05 -0.67 5.81 16 39 H 0.07 1.67 7.64 -2.38 -0.02 1.65 16 40 H 0.07 1.77 7.66 -2.39 -0.02 1.76 16 41 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 42 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 43 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 44 H 0.11 6.02 5.82 -2.91 -0.02 6.01 16 45 H 0.12 4.67 6.27 -2.91 -0.02 4.65 16 Total: -1.00 -71.46 365.68 -0.05 -71.51 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -0.29 Total: 32.30 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 4.52 Total: -39.98 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -3.59 Total: -54.07 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -2.72 Total: -48.95 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -71.46 -0.05 -71.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596224895.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.220 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds